Optimization of culture conditions of Scenedesmus sp. algae and catalytic performance of a NiFe2O4@SiO2/MgO magnetic nano-catalyst for biodiesel production.

This study aims to optimize the lipid content of Scenedesmus sp. for high-yield biodiesel production. Three factors affecting the culture conditions, namely salinity, nitrogen concentration, and light intensity, were selected and their effects on the maximum lipid content were investigated using the Box Behnken design. The results showed that the maximum lipid content (32.7% of algal dry weight) was obtained in the algal samples cultured under the optimized conditions. A core-shell magnetic nano-catalyst, NiFe2O4@SiO2/MgO, was synthesized and used to produce biodiesel via the transesterification reaction. The nano-catalyst was characterized by field emission scanning electron microscopy (FE-SEM), energy-dispersive X-ray spectroscopy (EDS), X-ray powder diffraction analysis (XRD), vibrating sample magnetometry (VSM), elemental mapping techniques, transmission electron microscopy (TEM), and Fourier transform infrared spectroscopy (FT-IR). Using the Box Behnken design and keeping the temperature constant, the molar ratio of methanol to oil, the amount of catalyst, and the time were optimized to achieve the maximum yield of biodiesel. The maximum yield of biodiesel was 95.3% under the optimal conditions.

Nanophycology, the merging of nanoscience into algal research: A review.

Nanophycology is recognized as one of the most important and widely used interdisciplinary sciences by creating a connection between nanotechnology on the one hand and phycology on the other hand. Algal nanoparticle biosynthesis is a starting point in studies and research related to nanophycology. Nanophycology consists of two parts, nano and phycology, and by taking advantage of the high potential of algae such as high biological safety, easy production, fast growth, and high stability in the phycology part of this science, which is also known as algology, algae nanoparticles synthesis and make this section related to nanotechnology. In this way, algae are known as factories of biological nanomaterials and cause the production of bio-stable nanotechnology and the removal of environmental pollutants released due to nanochemistry. Nanotechnology produced by algae in the science of nanophycology, due to algae's unique physical and chemical properties compared to other biological entities such as plants, fungi, and bacteria, is used in various fields including medicine, biorefining, purification Water, etc. In this review article, the most important goals of the science of nanophycology, including the biosynthesis of algal nanoparticles and the potential of these compounds in various fields of application, have been examined and discussed.

Regulation of drought-related responses in tomato plants by two classes of calcineurin B-like (SlCBL1/2) proteins.

Calcineurin-B-like proteins (CBLs) are essential components of the calcium signaling network and act during plant's response to stress and normal conditions. A combined research strategy of in-silico analysis and gene silencing experiment was employed to investigate the role of different classes of CBLs in tomato (Solanum lycopersicum L.) during the response to drought stress. Two different classes of CBL genes, including SlCBL3-1, and SlCBL3-2, with the minimum and a maximum number of drought-responsive cis-elements, were selected and were targeted for transient gene silencing in tomato followed by the drought treatment. The effect of silencing events was evaluated by determining of further growth and physiological traits in plants under both control and drought stress conditions. The results showed that silencing of SlCBL3-1 significantly reduced shoot and root growth, relative water content (RWC), and the concentration of pigments while increased free radical accumulation, lipid peroxidation, and leakage from the cells. On the other hand, no antioxidant enzyme activity or proline induction was triggered in plants after SlCBL3-1 silencing. Some of these adverse events were more significantly enhanced when the silenced plants were exposed to drought stress. Overall, a significant role for SlCBL3-1 in the life cycle of plant suggested under both normal and stress conditions. The SlCBL3-2 silencing showed more efficient plants recovery from silencing or drought stress conditions. Therefore, SlCBL3-2 gene may act as a negative regulator under stress conditions. The results might provide new theoretical insight and genetic resources for developing resistant crops against environmental stresses.

Toxicity of Nd2WO6 nanoparticles to the microalga Dunaliella salina: synthesis of nanoparticles and investigation of their impact on microalgae.

The presence of nanoparticles in the environment and their impact on existing organisms is one of the main concerns of researchers working in this field. In this research, Nd2WO6 nanoparticles were prepared by an ultrasonic procedure for the first time. X-ray powder diffraction (XRD), Fourier-transform infrared spectroscopy (FT-IR), and energy-dispersive X-ray spectroscopy (EDS) analyses were applied to identify and prove the purity of these particles. In addition to increasing the reaction rate and efficiency with the help of a radical generation mechanism, ultrasound was able to aid the synthesis of these particles. After confirming nanoparticle formation, the optimal nanoparticles in view of scale and morphology were selected by scanning electron microscopy (SEM) and transmission electron microscopy (TEM). Optimal particles at three concentrations (25, 50, and 100 ppm) were mixed into the algae growth medium to investigate the effects of the nanoparticles on Dunaliella salina growth. Biological parameters, including the number of cells, biomass, specific growth rate, pigments, and malondialdehyde (MDA), were measured after ten days. Growth parameters showed an increasing trend in concentrations up to 50 ppm; however, at a concentration of 100 ppm, a significant decrease was observed in contrast to the nanoparticles-free treatment. The MDA content showed a linear relationship with enhanced concentration of the nanoparticles. The examination of biological parameters showed that the algae response to stress was dependent on the concentration of nanoparticles. The results showed that 50 ppm of nanoparticles are suitable for increasing algae and achieving a suitable growth rate for commercial purposes. However, in higher concentrations, algal growth inhibition occurs, which is of great importance from a biotechnological point of view.

Toxic effects of Fe2WO6 nanoparticles towards microalga Dunaliella salina: Sonochemical synthesis nanoparticles and investigate its impact on the growth.

In this work, Fe2WO6 nanoparticles were synthesized by the ultrasound-assisted precipitation method. Various conditions were applied, including the change of the pH factor and reaction time for the synthesis of nanoparticles. After confirming the synthesis of the nanoparticles by various analyzes and evaluating their size and morphology, one of the conditions for the synthesis of the nanoparticles were selected as the optimum condition. The samples were added to the growth medium of a well-known microalga, Dunaliella salina at three concentrations of 20, 40 and 80 ppm to evaluate the effect of nanoparticles on biological systems. After 10 days different biological parameters were measured and compared with those of the control sample. According to the results, at concentration of 20 ppm the number of cells, the amount of chlorophyll a, and b, and biomass increased compared to the control samples. The Carotenoid level was higher in the treatment with 40 ppm of nanoparticles than that in the control samples. Compared to the control sample, the level of lipid peroxidation and the ratio of carbohydrate to amide II showed to be higher under 80 ppm treatment of particles. According to HCA analysis, both the evaluated parameters and concentrations of nanoparticles were divided into two general categories. Overall results showed that the effect of Fe2WO6 nanoparticles on microalgae could be a dose-dependent phenomenon, so that the addition of 20 ppm nanoparticles in the culture media helped the growth and the physiological status of algae. On the other hand, the application of a higher concentration of nanoparticles negatively affects algal biology. The results showed that the algae could be successfully used to precise screen of various nanoparticles in terms of safety especially in aquatic environments and also biotechnological applications.

Improvement of ionizing gamma irradiation tolerance of Chlorella vulgaris by pretreatment with polyethylene glycol.

Purpose: To evaluate the effects of polyethylene glycol (PEG) 6000 pretreatment on growth and physiological responses of eukaryotic microalga Chlorella vulgaris exposed to ionizing irradiation.Materials and methods: The microalgal cells pretreated with different PEG concentrations (0, 5, 10 and 20%) and then exposed to 300 Gray gamma irradiation at a dose rate of 0.5 Gy s-1. The various growth and physiological parameters including algal growth, cell size, the degree of electrolyte leakage (EL) and lipid peroxidation, the content of pigments and proline and the activity of antioxidant enzymes under gamma-free or 300 Gray gamma irradiation conditions were examined.Results: The results showed that PEG stimulated a higher growth and cell size under both stress-free and gamma-stress conditions. The maximum growth and cell size was reported when the algae was pretreated with 10% PEG. A relative increase of catalase activity was observed in all samples after exposing to gamma irradiation. However, the highest value was recorded for the gamma-radiated algae pretreated with 10% PEG. In the absence of PEG, gamma irradiation induced a significant reduction in ascorbate peroxidase activity, but with PEG pretreatment, the enzyme activity remained constant or even increased after gamma irradiation. On the other hand, although gamma irradiation stress generally suppressed the activity of superoxide dismutase in all cells, pretreating the algae with PEG could diminish this suppressing effect at all applied concentrations. Compared to the PEG-free controls, a lower rate of chlorophylls and membrane integrity loss was shown in the PEG-treated algae when exposed to gamma stress. Total carotenoid content in PEG-treated algae was also similar under both gamma-free and gamma-radiated conditions. A PEG-independent increase in proline accumulation was reported under gamma-irradiation treatment.Conclusions: Overall, the results suggested that PEG pretreatment could improve gamma-irradiation tolerance in C. vulgaris probably by stimulating a range of enzymatic and non-enzymatic reactive oxygen species scavenging systems. The microalgae may also consume PEG to break down and use it as an alternative source of carbon during stress which should be further studied in detail.

CaCl2 pretreatment improves gamma toxicity tolerance in microalga Chlorella vulgaris.

The Chlorella vulgaris has been generally recognized as a promising microalgal model to study stress-related responses due to its ability to withstand against ionizing and non-ionizing radiation. The objective of the present study was to investigate the effect of CaCl2 pre-treatment at different concentrations on the responses of microalga C. vulgaris under gamma radiation toxicity. Changes in growth, physiological parameters and biochemical compositions of the algae pretreated with 0.17 (normal), 5, and 10 mM CaCl2 were analyzed under 300 Gy gamma irradiation and compared to those of gamma-free control. The results showed that parameters including specific growth rate, cell size, chlorophyll and protein contents, ascorbate peroxidase (APX), and superoxide dismutase (SOD) activity, Ferric Reducing Antioxidant Power (FRAP), and the ratios of nucleic acid to protein negatively affected by gamma irradiation. All these parameters, except for the ratios of nucleic acid to protein significantly increased in the algae when pretreated with a CaCl2 content higher than normal concentration. The analysis also showed that parameters including catalase activity, proline, and carotenoid content, the level of lipid peroxidation, and electrolyte leakage (EL) significantly increased under gamma irradiation but not affected significantly under different CaCl2 pre-treatments. Additionally, specific growth rate, chlorophyll a and protein content, APX and SOD activity, FRAP, lipid peroxidation, electrolyte leakage, and the ratios of nucleic acid to protein were the only parameters that significantly affected by the interaction of gamma toxicity and CaCl2 pretreatment. Overall, the results suggested that regardless of the CaCl2 effect, the algal cells responded to gamma radiation more efficiently by increasing proline, carotenoids content, and CAT activity. More important, it was concluded that calcium had an essential role in modifying the detrimental effect of gamma toxicity on the algae mainly by increasing the activity of ascorbate peroxidase and superoxide dismutase and maintaining the reducing antioxidant power (FRAP) of the cells at a high level.

Molecular Epidemiology of Antimicrobial Resistance of Uropathogenic Escherichia coli Isolates from Patients with Urinary Tract Infections in a Tertiary Teaching Hospital in Iran.

To characterize the resistance patterns of uropathogenic Escherichia coli (UPEC) in a Tertiary Teaching Hospital in Iran, we conducted a descriptive epidemiology study using molecular techniques. The subjects consisted of patients having acute urinary tract infection, who were enrolled in the study from 2014 to 2017. The antimicrobial susceptibility profile of 101 UPEC isolates was determined by Kirby-Bauer disc diffusion method. Extended spectrum ß-lactamase (ESBL) was detected by the double-disk synergy test. Biofilm formation was done using microtiter plates. The presence of virulence genes (pai, pap, hly, traT, pai, cnf-1, sfa, and afa) was evaluated by a PCR. Molecular typing of UPEC E. coli isolates was performed with fimH and multilocus sequence typing (MLST). 70.3% of isolates were multidrug-resistant. 37.6% of isolates were Extended spectrum ß-lactamases (ESBLs) producer. Strong biofilm formation was seen in 27.7%. Forty-seven different fimH allelic variants were identified. Among identified fimH allelic variants, the most common types were f1 (18.8%) and f14 (18.8%). ST131 (54.5%) was the most prevalent clonal group significantly correlated with the pai gene. Seven sequence types (STs) were detected only once (ST405, ST410, ST450, ST636, ST648, ST1193, and ST6451). Clonal groups showed no significant differences in terms of antibiotic resistance patterns. There was no significant difference between virulence genes and antibiotic resistance patterns in the studied clonal groups. To our knowledge, the present study is the first study in Iran that investigated the genotypic diversity of UPEC isolates by MLST and fimH typing methods. The two methods might serve as a useful molecular test for surveillance and epidemiological studies of isolates.

Assessment of the expression level of miRNA molecules using a semi-quantitative RT-PCR approach.

Type 2 diabetes is one of the most prevalent diseases, which increases resistance to insulin in target tissues. The measurement of miRNAs quantity is a molecular approach for diagnosis of diabetes. miRNAs are small non-coding RNA strings of 21-23 long nucleotides that act as inhibitors in proteins translation. Several methods including Northern blot, qRT-PCR and Microarray have been used for diagnosis of miRNA molecules. Real time PCR is an expensive and accurate quantitative method that is widely used in miRNA studies. The miR-21 is an important miRNA in diabetes. In this study, for the first time, a semi-quantitative protocol was developed to quantify different amounts of a synthetic miR-21. In addition to semi-quantitative method, the miR-21 quantity was determined by quantitative method in several patients with type 2 diabetes and healthy people. The results indicated that there was a direct relationship between the amount of synthetic miR-21 and the intensity of the PCR bands. We also showed that the expression of miR-21 in people with type 2 diabetes increased compared to healthy people. The results were observed by both quantitative and semi-quantitative methods. The real-time RT-PCR was more sensitive than semi-quantitative PCR in identification of miRNAs. However, semi-quantitative PCR method benefited from higher simplicity and lower costs for defining general patterns of miRNA expression.

Assessing the tobacco-rattle-virus-based vectors system as an efficient gene silencing technique in Datura stramonium (Solanaceae).

Datura stramonium is a well-known medicinal plant, which is important for its alkaloids. There are intrinsic limitations for the natural production of alkaloids in plants; metabolic engineering methods can be effectively used to conquer these limitations. In order for this the genes involved in corresponding pathways need to be studied. Virus-Induced Gene Silencing is known as a functional genomics technique to knock-down expression of endogenous genes. In this study, we silenced phytoene desaturase as a marker gene in D. stramonium in a heterologous and homologous manner by tobacco-rattle-virus-based VIGS vectors. Recombinant TRV vector containing pds gene from D. stramonium (pTRV2-Dspds) was constructed and injected into seedlings. The plants injected with pTRV2-Dspds showed photobleaching 2 weeks after infiltration. Spectrophotometric analysis demonstrated that the amount of chlorophylls and carotenoids in leaves of the bleached plants decreased considerably compared to that of the control plants. Semi-Quantitative RT-PCR results also confirmed that the expression of pds gene in the silenced plants was significantly reduced in comparison with the control plants. The results showed that the viral vector was able to influence the levels of total alkaloid content in D. stramonium. Our results illustrated that TRV-based VIGS vectors are able to induce effective and reliable functional gene silencing in D. stramonium as an alternative tool for studying the genes of interest in this plant, such as the targeted genes in tropane alkaloid biosynthetic pathway. The present work is the first report of establishing VIGS as an efficient method for transient silencing of any gene of interest in D. stramonium.