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1.
Eur J Med Chem ; 219: 113419, 2021 Jul 05.
Artículo en Inglés | MEDLINE | ID: mdl-33845233

RESUMEN

The pathogenesis of Alzheimer's disease (AD) has been associated with dysregulation of histone deacetylases (HDACs). Previously, acridine-based HDAC inhibitors have shown potential in ameliorating HDAC activity and enhancing neurite outgrowth. In this study, the acridine ring was modified using various phenothiazine derivatives. Several resulting compounds exhibited potent enzyme-inhibiting activity towards class II HDACs when compared to the clinically approved HDAC inhibitor SAHA. Compound 4f demonstrated the highest class II HDAC inhibition (IC50 = 4.6-600 nM), as well as promotion of neurite outgrowth. Importantly, compound 4f displayed no cytotoxicity against neuron cells. Compound 4f was further evaluated for cellular effects. Altogether, these findings show a potential strategy in HDAC inhibition for treatment of the neurological disease.


Asunto(s)
Inhibidores de Histona Desacetilasas/síntesis química , Histona Desacetilasas/química , Ácidos Hidroxámicos/química , Fenotiazinas/química , Acetilación/efectos de los fármacos , Enfermedad de Alzheimer/tratamiento farmacológico , Enfermedad de Alzheimer/patología , Sitios de Unión , Barrera Hematoencefálica/efectos de los fármacos , Barrera Hematoencefálica/metabolismo , Línea Celular Tumoral , Supervivencia Celular/efectos de los fármacos , Diseño de Fármacos , Inhibidores de Histona Desacetilasas/metabolismo , Inhibidores de Histona Desacetilasas/farmacología , Inhibidores de Histona Desacetilasas/uso terapéutico , Histona Desacetilasas/genética , Histona Desacetilasas/metabolismo , Histonas/metabolismo , Humanos , Simulación del Acoplamiento Molecular , Neuritas/efectos de los fármacos , Neuritas/fisiología , Fármacos Neuroprotectores/síntesis química , Fármacos Neuroprotectores/metabolismo , Fármacos Neuroprotectores/farmacología , Fármacos Neuroprotectores/uso terapéutico , Estrés Oxidativo/efectos de los fármacos , Fenotiazinas/metabolismo , Fenotiazinas/farmacología , Fenotiazinas/uso terapéutico , Relación Estructura-Actividad , Tubulina (Proteína)/metabolismo
2.
J Venom Anim Toxins Incl Trop Dis ; 26: e20200056, 2020 Nov 20.
Artículo en Inglés | MEDLINE | ID: mdl-33281887

RESUMEN

BACKGROUND: The venom of bamboo vipers (Trimeresurus stejnegeri - TS), commonly found in Taiwan, contains deadly hemotoxins that cause severe envenomation. Equine-derived antivenom is a specific treatment against snakebites, but its production costs are high and there are some inevitable side effects. The aim of the present work is to help in the development of an affordable and more endurable therapeutic strategy for snakebites. METHODS: T. stejnegeri venom proteins were inactivated by glutaraldehyde in order to immunize hens for polyclonal immunoglobulin (IgY) antibodies production. After IgY binding assays, two antibody libraries were constructed expressing single-chain variable fragment (scFv) antibodies joined by the short or long linker for use in phage display antibody technology. Four rounds of biopanning were carried out. The selected scFv antibodies were then further tested for their binding activities and neutralization assays to TS proteins. RESULTS: Purified IgY from egg yolk showed the specific binding ability to TS proteins. The dimensions of these two libraries contain 2.4 × 107 and 6.8 × 107 antibody clones, respectively. An increase in the titers of eluted phage indicated anti-TS clones remarkably enriched after 2nd panning. The analysis based on the nucleotide sequences of selected scFv clones indicated that seven groups of short linkers and four groups of long linkers were identified. The recombinant scFvs showed significant reactivity to TS venom proteins and a cross-reaction to Trimeresurus mucrosquamatus venom proteins. In in vivo studies, the data demonstrated that anti-TS IgY provided 100% protective effects while combined scFvs augmented partial survival time of mice injected with a lethal amount of TS proteins. CONCLUSION: Chickens were excellent hosts for the production of neutralization antibodies at low cost. Phage display technology is available for generation of monoclonal antibodies against snake venom proteins. These antibodies could be applied in the development of diagnostic kits or as an alternative for snakebite envenomation treatment in the near future.

3.
J. venom. anim. toxins incl. trop. dis ; 26: e20200056, 2020. tab, graf
Artículo en Inglés | LILACS, VETINDEX | ID: biblio-1135145

RESUMEN

The venom of bamboo vipers (Trimeresurus stejnegeri - TS), commonly found in Taiwan, contains deadly hemotoxins that cause severe envenomation. Equine-derived antivenom is a specific treatment against snakebites, but its production costs are high and there are some inevitable side effects. The aim of the present work is to help in the development of an affordable and more endurable therapeutic strategy for snakebites. Methods: T. stejnegeri venom proteins were inactivated by glutaraldehyde in order to immunize hens for polyclonal immunoglobulin (IgY) antibodies production. After IgY binding assays, two antibody libraries were constructed expressing single-chain variable fragment (scFv) antibodies joined by the short or long linker for use in phage display antibody technology. Four rounds of biopanning were carried out. The selected scFv antibodies were then further tested for their binding activities and neutralization assays to TS proteins. Results: Purified IgY from egg yolk showed the specific binding ability to TS proteins. The dimensions of these two libraries contain 2.4 × 107 and 6.8 × 107 antibody clones, respectively. An increase in the titers of eluted phage indicated anti-TS clones remarkably enriched after 2nd panning. The analysis based on the nucleotide sequences of selected scFv clones indicated that seven groups of short linkers and four groups of long linkers were identified. The recombinant scFvs showed significant reactivity to TS venom proteins and a cross-reaction to Trimeresurus mucrosquamatus venom proteins. In in vivo studies, the data demonstrated that anti-TS IgY provided 100% protective effects while combined scFvs augmented partial survival time of mice injected with a lethal amount of TS proteins. Conclusion: Chickens were excellent hosts for the production of neutralization antibodies at low cost. Phage display technology is available for generation of monoclonal antibodies against snake venom proteins. These antibodies could be applied in the development of diagnostic kits or as an alternative for snakebite envenomation treatment in the near future.(AU)


Asunto(s)
Animales , Venenos de Serpiente , Antivenenos , Pollos , Trimeresurus , Anticuerpos , Bacteriófagos
4.
Chembiochem ; 20(2): 295-307, 2019 01 18.
Artículo en Inglés | MEDLINE | ID: mdl-30609216

RESUMEN

Endoglucanase CtCel9Q is one of the enzyme components of the cellulosome, which is an active cellulase system in the thermophile Clostridium thermocellum. The precursor form of CtCel9Q comprises a signal peptide, a glycoside hydrolase family 9 catalytic domain, a type 3c carbohydrate-binding module (CBM), and a type I dockerin domain. Here, we report the crystal structures of C-terminally truncated CtCel9Q (CtCel9QΔc) complexed with Tris, Tris+cellobiose, cellobiose+cellotriose, cellotriose, and cellotetraose at resolutions of 1.50, 1.70, 2.05, 2.05 and 1.75 Å, respectively. CtCel9QΔc forms a V-shaped homodimer through residues Lys529-Glu542 on the type 3c CBM, which pairs two ß-strands (ß4 and ß5 of the CBM). In addition, a disulfide bond was formed between the two Cys535 residues of the protein monomers in the asymmetric unit. The structures allow the identification of four minus (-) subsites and two plus (+) subsites; this is important for further understanding the structural basis of cellulose binding and hydrolysis. In the oligosaccharide-free and cellobiose-bound CtCel9QΔc structures, a Tris molecule was found to be bound to three catalytic residues of CtCel9Q and occupied subsite -1 of the CtCel9Q active-site cleft. Moreover, the enzyme activity assay in the presence of 100 mm Tris showed that the Tris almost completely suppressed CtCel9Q hydrolase activity.


Asunto(s)
Celulasa/química , Celulosa/análogos & derivados , Clostridium thermocellum/enzimología , Dextrinas/química , Oligosacáridos/química , Celulasa/metabolismo , Celulosa/química , Cristalografía por Rayos X , Concentración de Iones de Hidrógeno , Modelos Moleculares , Temperatura
5.
Toxins (Basel) ; 10(10)2018 09 21.
Artículo en Inglés | MEDLINE | ID: mdl-30248928

RESUMEN

Traditional, horse-derived antivenin is currently the most efficient treatment against snake bites. However, it is costly and has unpredictable side effects. Thus, alternative, cost-effective strategies for producing antivenin are needed. In this study, we immunized hens with inactivated NNA venom proteins from the cobra Naja naja atra (NNA). Purified yolk IgY antibodies showed specific anti-NNA binding activity comparable to that of the equine-derived antivenin. We used phage display technology to generate two antibody libraries containing 9.0 × 108 and 8.4 × 108 clones with a short or long linker, respectively. The phage ELISA indicated that anti-NNA clones displaying single-chain variable fragments (scFv) were significantly enriched after biopanning. The nucleotide sequences of the light and heavy chain genes of 30 monoclonal scFv antibodies were determined and classified into six groups with the short linker and nine groups with the long linker. These scFv clones specifically bound to NNA proteins but not to venom proteins from other snakes. Their binding affinities were further determined by competitive ELISA. Animal model studies showed that anti-NNA IgY antibodies exhibited complete protective effects, while a combination of scFv antibodies raised the survival rates and times of mice challenged with lethal doses of NNA venom proteins.


Asunto(s)
Antivenenos/inmunología , Venenos Elapídicos/inmunología , Naja naja , Anticuerpos de Cadena Única/inmunología , Animales , Pollos/inmunología , Femenino , Inmunoglobulinas/inmunología , Ratones Endogámicos ICR , Proteínas de Reptiles/inmunología , Mordeduras de Serpientes/diagnóstico , Mordeduras de Serpientes/terapia
7.
Oncotarget ; 7(28): 43629-43653, 2016 Jul 12.
Artículo en Inglés | MEDLINE | ID: mdl-27248319

RESUMEN

Immunogenic cell death (ICD) of tumor cells occurs via various pathways that activate immune cell systems against cancer. Previous studies have demonstrated that shikonin (SK), a plant secondary metabolite, can confer strong pharmacological activities that activate ICD and strong immunogenicity of tumor cells. However, the exact hierarchical regulatory mechanisms including the molecular targets of SK-activated immunogenicity are still unknown. Here, the heterogeneous nuclear ribonucleoprotein A1 (hnRNPA1) was revealed to serve as a specific protein target for SK. This binding plays a key role in SK-stimulated ICD activity and the suppression of post-transcriptional mRNA processing, including nuclear export activity of newly synthesized mRNAs in mammary carcinoma cells in vitro. Moreover, it also mechanistically mediates the anti-metastatic effect of a tumor cell lysate (TCL) vaccine, which can be readily generated from SK-treated 4T1 tumor cells (SK-TCL), and the derived tumor-immunogenicity of SK-TCL-treated dendritic cells in vivo. Together, the identification of hnRNPA1 as the intracellular molecular target provides compelling pharmacology-based knowledge for the potential clinical use of SK-induced immunogenicity. In addition, SK may also serve as a potent suppressor that interferes with specific post-transcriptional activities, a mechanism which may be useful for exploitation in cancer therapeutics.


Asunto(s)
Antineoplásicos/uso terapéutico , Apoptosis/inmunología , Neoplasias de la Mama/terapia , Ribonucleoproteína Nuclear Heterogénea A1/metabolismo , Naftoquinonas/uso terapéutico , Procesamiento Postranscripcional del ARN/efectos de los fármacos , Animales , Antineoplásicos/inmunología , Neoplasias de la Mama/inmunología , Neoplasias de la Mama/patología , Vacunas contra el Cáncer/inmunología , Línea Celular Tumoral , Células Dendríticas/inmunología , Femenino , Ribonucleoproteína Nuclear Heterogénea A1/inmunología , Humanos , Ratones , Ratones Endogámicos BALB C , Simulación del Acoplamiento Molecular , Naftoquinonas/inmunología , ARN Mensajero/metabolismo , Espectrometría de Masas en Tándem , Ensayos Antitumor por Modelo de Xenoinjerto
8.
Nucleic Acids Res ; 42(22): 13573-87, 2014 Dec 16.
Artículo en Inglés | MEDLINE | ID: mdl-25398907

RESUMEN

We have shown that Sp1 phosphorylation at Thr739 decreases its DNA-binding activity. In this study, we found that phosphorylation of Sp1 at Thr739 alone is necessary, but not sufficient for the inhibition of its DNA-binding activity during mitosis. We demonstrated that Pin1 could be recruited to the Thr739(p)-Pro motif of Sp1 to modulate the interaction between phospho-Sp1 and CDK1, thereby facilitating CDK1-mediated phosphorylation of Sp1 at Ser720, Thr723 and Thr737 during mitosis. Loss of the C-terminal end of Sp1 (amino acids 741-785) significantly increased Sp1 phosphorylation, implying that the C-terminus inhibits CDK1-mediated Sp1 phosphorylation. Binding analysis of Sp1 peptides to Pin1 by isothermal titration calorimetry indicated that Pin1 interacts with Thr739(p)-Sp1 peptide but not with Thr739-Sp1 peptide. X-ray crystallography data showed that the Thr739(p)-Sp1 peptide occupies the active site of Pin1. Increased Sp1 phosphorylation by CDK1 during mitosis not only stabilized Sp1 levels by decreasing interaction with ubiquitin E3-ligase RNF4 but also caused Sp1 to move out of the chromosomes completely by decreasing its DNA-binding activity, thereby facilitating cell cycle progression. Thus, Pin1-mediated conformational changes in the C-terminal region of Sp1 are critical for increased CDK1-mediated Sp1 phosphorylation to facilitate cell cycle progression during mitosis.


Asunto(s)
Proteína Quinasa CDC2/metabolismo , Mitosis , Isomerasa de Peptidilprolil/metabolismo , Factor de Transcripción Sp1/metabolismo , Animales , Células Cultivadas , ADN/metabolismo , Células HeLa , Humanos , Ratones , Mitosis/genética , Peptidilprolil Isomerasa de Interacción con NIMA , Fosforilación , Conformación Proteica , Estabilidad Proteica , Factor de Transcripción Sp1/química
9.
Angew Chem Int Ed Engl ; 53(48): 13054-8, 2014 Nov 24.
Artículo en Inglés | MEDLINE | ID: mdl-25287606

RESUMEN

Crown ethers are small, cyclic polyethers that have found wide-spread use in phase-transfer catalysis and, to a certain degree, in protein chemistry. Crown ethers readily bind metallic and organic cations, including positively charged amino acid side chains. We elucidated the crystal structures of several protein-crown ether co-crystals grown in the presence of 18-crown-6. We then employed biophysical methods and molecular dynamics simulations to compare these complexes with the corresponding apoproteins and with similar complexes with ring-shaped low-molecular-weight polyethylene glycols. Our studies show that crown ethers can modify protein surface behavior dramatically by stabilizing either intra- or intermolecular interactions. Consequently, we propose that crown ethers can be used to modulate a wide variety of protein surface behaviors, such as oligomerization, domain-domain interactions, stabilization in organic solvents, and crystallization.


Asunto(s)
Éteres Cíclicos/química , Modelos Anatómicos , Modelos Moleculares , Simulación de Dinámica Molecular , Ingeniería de Proteínas , Propiedades de Superficie
10.
Acta Crystallogr D Biol Crystallogr ; 70(Pt 2): 231-41, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24531458

RESUMEN

Squalene synthase (SQS) is a divalent metal-ion-dependent enzyme that catalyzes the two-step reductive `head-to-head' condensation of two molecules of farnesyl pyrophosphate to form squalene using presqualene diphosphate (PSPP) as an intermediate. In this paper, the structures of human SQS and its mutants in complex with several substrate analogues and intermediates coordinated with Mg2+ or Mn2+ are presented, which stepwise delineate the biosynthetic pathway. Extensive study of the SQS active site has identified several critical residues that are involved in binding reduced nicotinamide dinucleotide phosphate (NADPH). Based on mutagenesis data and a locally closed (JK loop-in) structure observed in the hSQS-(F288L)-PSPP complex, an NADPH-binding model is proposed for SQS. The results identified four major steps (substrate binding, condensation, intermediate formation and translocation) of the ordered sequential mechanisms involved in the `1'-1' isoprenoid biosynthetic pathway. These new findings clarify previous hypotheses based on site-directed mutagenesis and biochemical analysis.


Asunto(s)
Farnesil Difosfato Farnesil Transferasa/química , Magnesio/química , Manganeso/química , NADP/química , Escualeno/química , Biocatálisis , Dominio Catalítico , Cationes Bivalentes , Cristalografía por Rayos X , Escherichia coli/genética , Escherichia coli/metabolismo , Farnesil Difosfato Farnesil Transferasa/genética , Expresión Génica , Humanos , Magnesio/metabolismo , Manganeso/metabolismo , Mutagénesis Sitio-Dirigida , NADP/metabolismo , Fosfatos de Poliisoprenilo/metabolismo , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Sesquiterpenos/metabolismo , Escualeno/metabolismo , Electricidad Estática
11.
Acta Crystallogr D Biol Crystallogr ; 68(Pt 7): 829-38, 2012 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-22751668

RESUMEN

NkBgl, a ß-glucosidase from Neotermes koshunensis, is a ß-retaining glycosyl hydrolase family 1 enzyme that cleaves ß-glucosidic linkages in disaccharide or glucose-substituted molecules. ß-Glucosidases have been widely used in several applications. For example, mutagenesis of the attacking nucleophile in ß-glucosidase has been conducted to convert it into a glycosynthase for the synthesis of oligosaccharides. Here, several high-resolution structures of wild-type or mutated NkBgl in complex with different ligand molecules are reported. In the wild-type NkBgl structures it was found that glucose-like glucosidase inhibitors bind to the glycone-binding pocket, allowing the buffer molecule HEPES to remain in the aglycone-binding pocket. In the crystal structures of NkBgl E193A, E193S and E193D mutants Glu193 not only acts as the catalytic acid/base but also plays an important role in controlling substrate entry and product release. Furthermore, in crystal structures of the NkBgl E193D mutant it was found that new glucoconjugates were generated by the conjugation of glucose (hydrolyzed product) and HEPES/EPPS/opipramol (buffer components). Based on the wild-type and E193D-mutant structures of NkBgl, the glucosidic bond of cellobiose or salicin was hydrolyzed and a new bond was subsequently formed between glucose and HEPES/EPPS/opipramol to generate new glucopyranosidic products through the transglycosylation reaction in the NkBgl E193D mutant. This finding highlights an innovative way to further improve ß-glucosidases for the enzymatic synthesis of oligosaccharides.


Asunto(s)
Glicoconjugados/metabolismo , Isópteros/enzimología , Oligosacáridos/metabolismo , beta-Glucosidasa/química , beta-Glucosidasa/metabolismo , Animales , Sitios de Unión , Cristalografía por Rayos X , Glucosa/metabolismo , Glicosilación , HEPES/metabolismo , Isópteros/química , Isópteros/genética , Isópteros/metabolismo , Modelos Moleculares , Mutación , Conformación Proteica , beta-Glucosidasa/genética
12.
J Biol Chem ; 287(22): 18750-7, 2012 May 25.
Artículo en Inglés | MEDLINE | ID: mdl-22474324

RESUMEN

Zaragozic acids (ZAs) belong to a family of fungal metabolites with nanomolar inhibitory activity toward squalene synthase (SQS). The enzyme catalyzes the committed step of sterol synthesis and has attracted attention as a potential target for antilipogenic and antiinfective therapies. Here, we have determined the structure of ZA-A complexed with human SQS. ZA-A binding induces a local conformational change in the substrate binding site, and its C-6 acyl group also extends over to the cofactor binding cavity. In addition, ZA-A effectively inhibits a homologous bacterial enzyme, dehydrosqualene synthase (CrtM), which synthesizes the precursor of staphyloxanthin in Staphylococcus aureus to cope with oxidative stress. Size reduction at Tyr(248) in CrtM further increases the ZA-A binding affinity, and it reveals a similar overall inhibitor binding mode to that of human SQS/ZA-A except for the C-6 acyl group. These structures pave the way for further improving selectivity and development of a new generation of anticholesterolemic and antimicrobial inhibitors.


Asunto(s)
Compuestos Bicíclicos Heterocíclicos con Puentes/metabolismo , Farnesil Difosfato Farnesil Transferasa/metabolismo , Staphylococcus/enzimología , Ácidos Tricarboxílicos/metabolismo , Farnesil Difosfato Farnesil Transferasa/química , Humanos , Modelos Moleculares
13.
J Struct Biol ; 173(1): 46-56, 2011 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-20682343

RESUMEN

ß-glucosidases (EC 3.2.1.21) cleave ß-glucosidic linkages in disaccharide or glucose-substituted molecules and play important roles in fundamental biological processes. ß-Glucosidases have been widely used in agricultural, biotechnological, industrial and medical applications. In this study, a high yield expression (70-250 mg/l) in Escherichia coli of the three functional ß-glucosidase genes was obtained from the bacterium Clostridium cellulovorans (CcBglA), the fungus Trichoderma reesei (TrBgl2), and the termite Neotermes koshunensis (NkBgl) with the crystal structures of CcBglA, TrBgl2 and NkBgl, determined at 1.9Å, 1.63Å and 1.34Å resolution, respectively. The overall structures of these enzymes are similar to those belonging to the ß-retaining glycosyl hydrolase family 1, which have a classical (α/ß)(8)-TIM barrel fold. Each contains a slot-like active site cleft and a more variable outer opening, related to its function in processing different lengths of ß-1,4-linked glucose derivatives. The two essential glutamate residues for hydrolysis are spatially conserved in the active site. In both TrBgl2 and NkBgl structures, a Tris molecule was found to bind at the active site, explaining the slight inhibition of hydrolase activity observed in Tris buffer. Manganese ions at 10mM exerted an approximate 2-fold enzyme activity enhancement of all three ß-glucosidases, with CcBglA catalyzing the most efficiently in hydrolysis reaction and tolerating Tris as well as some metal inhibition. In summary, our results for the structural and functional properties of these three ß-glucosidases from various biological sources open important avenues of exploration for further practical applications.


Asunto(s)
Celulasas/química , Clostridium cellulovorans/enzimología , Isópteros/enzimología , Modelos Moleculares , Trichoderma/enzimología , Animales , Catálisis , Celulasas/genética , Celulasas/metabolismo , Clonación Molecular , Cristalización , Cartilla de ADN/genética , Concentración de Iones de Hidrógeno , Cinética , Metales/metabolismo , Especificidad de la Especie , Temperatura , Difracción de Rayos X
14.
Proc Natl Acad Sci U S A ; 107(50): 21337-42, 2010 Dec 14.
Artículo en Inglés | MEDLINE | ID: mdl-21098670

RESUMEN

"Head-to-head" terpene synthases catalyze the first committed steps in sterol and carotenoid biosynthesis: the condensation of two isoprenoid diphosphates to form cyclopropylcarbinyl diphosphates, followed by ring opening. Here, we report the structures of Staphylococcus aureus dehydrosqualene synthase (CrtM) complexed with its reaction intermediate, presqualene diphosphate (PSPP), the dehydrosqualene (DHS) product, as well as a series of inhibitors. The results indicate that, on initial diphosphate loss, the primary carbocation so formed bends down into the interior of the protein to react with C2,3 double bond in the prenyl acceptor to form PSPP, with the lower two-thirds of both PSPP chains occupying essentially the same positions as found in the two farnesyl chains in the substrates. The second-half reaction is then initiated by the PSPP diphosphate returning back to the Mg(2+) cluster for ionization, with the resultant DHS so formed being trapped in a surface pocket. This mechanism is supported by the observation that cationic inhibitors (of interest as antiinfectives) bind with their positive charge located in the same region as the cyclopropyl carbinyl group; that S-thiolo-diphosphates only inhibit when in the allylic site; activity results on 11 mutants show that both DXXXD conserved domains are essential for PSPP ionization; and the observation that head-to-tail isoprenoid synthases as well as terpene cyclases have ionization and alkene-donor sites which spatially overlap those found in CrtM.


Asunto(s)
Proteínas Bacterianas/antagonistas & inhibidores , Proteínas Bacterianas/metabolismo , Farnesil Difosfato Farnesil Transferasa/antagonistas & inhibidores , Farnesil Difosfato Farnesil Transferasa/metabolismo , Transferasas Alquil y Aril/química , Animales , Catálisis , Cationes/química , Humanos , Estructura Molecular , Fosfatos de Poliisoprenilo/química , Fosfatos de Poliisoprenilo/metabolismo , Escualeno/análogos & derivados , Escualeno/química , Escualeno/metabolismo
15.
Acta Crystallogr D Biol Crystallogr ; 66(Pt 2): 145-54, 2010 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-20124694

RESUMEN

The MST family is a subclass of mammalian serine/threonine kinases that are related to the yeast sterile-20 protein and are implicated in regulating cell growth and transformation. The MST3 protein contains a 300-residue catalytic domain and a 130-residue regulatory domain, which can be cleaved by caspase and activated by autophosphorylation, promoting apoptosis. Here, five crystal structures of the catalytic domain of MST3 are presented, including a complex with ADP and manganese, a unique cofactor preferred by the enzyme, and a complex with adenine. Similar to other protein kinases, the catalytic domain of MST3 folds into two lobes: the smaller N lobe forms the nucleotide-binding site and the larger C lobe recognizes the polypeptide substrate. The bound ADP and Mn(2+) ions are covered by a glycine-rich loop and held in place by Asn149 and Asp162. A different orientation was observed for the ligand in the MST3-adenine complex. In the activation loop, the side chain of Thr178 is phosphorylated and is sandwiched by Arg143 and Arg176. Comparison of this structure with other similar kinase structures shows a 180 degrees rotation of the loop, leading to activation of the enzyme. The well defined protein-ligand interactions also provide useful information for the design of potent inhibitors.


Asunto(s)
Adenina/química , Adenosina Difosfato/química , Manganeso/química , Dominios y Motivos de Interacción de Proteínas , Proteínas Serina-Treonina Quinasas/química , Adenina/metabolismo , Adenosina Difosfato/metabolismo , Adenosina Trifosfato/química , Adenosina Trifosfato/metabolismo , Secuencia de Aminoácidos , Dominio Catalítico , Secuencia Conservada , Cristalografía por Rayos X , Humanos , Manganeso/metabolismo , Modelos Moleculares , Datos de Secuencia Molecular , Unión Proteica , Proteínas Serina-Treonina Quinasas/metabolismo , Alineación de Secuencia , Homología Estructural de Proteína
16.
J Med Chem ; 52(13): 3869-80, 2009 Jul 09.
Artículo en Inglés | MEDLINE | ID: mdl-19456099

RESUMEN

The gold color of Staphylococcus aureus is derived from the carotenoid staphyloxanthin, a virulence factor for the organism. Here, we report the synthesis and activity of a broad variety of staphyloxanthin biosynthesis inhibitors that inhibit the first committed step in its biosynthesis, condensation of two farnesyl diphosphate (FPP) molecules to dehydrosqualene, catalyzed by the enzyme dehydrosqualene synthase (CrtM). The most active compounds are phosphonoacetamides that have low nanomolar K(i) values for CrtM inhibition and are active in whole bacterial cells and in mice, where they inhibit S. aureus disease progression. We also report the X-ray crystallographic structure of the most active compound, N-3-(3-phenoxyphenyl)propylphosphonoacetamide (IC(50) = 8 nM, in cells), bound to CrtM. The structure exhibits a complex network of hydrogen bonds between the polar headgroup and the protein, while the 3-phenoxyphenyl side chain is located in a hydrophobic pocket previously reported to bind farnesyl thiodiphosphate (FsPP), as well as biphenyl phosphonosulfonate inhibitors. Given the good enzymatic, whole cell, and in vivo pharmacologic activities, these results should help guide the further development of novel antivirulence factor-based therapies for S. aureus infections.


Asunto(s)
Antibacterianos/química , Compuestos Organofosforados/síntesis química , Staphylococcus aureus/efectos de los fármacos , Factores de Virulencia/antagonistas & inhibidores , Xantófilas/antagonistas & inhibidores , Proteínas Bacterianas/antagonistas & inhibidores , Línea Celular , Cristalografía por Rayos X , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/química , Inhibidores Enzimáticos/farmacología , Farnesil Difosfato Farnesil Transferasa/antagonistas & inhibidores , Humanos , Concentración 50 Inhibidora , Compuestos Organofosforados/química , Compuestos Organofosforados/farmacología , Staphylococcus aureus/patogenicidad , Factores de Virulencia/biosíntesis , Xantófilas/biosíntesis
17.
Science ; 319(5868): 1391-4, 2008 Mar 07.
Artículo en Inglés | MEDLINE | ID: mdl-18276850

RESUMEN

Staphylococcus aureus produces hospital- and community-acquired infections, with methicillin-resistant S. aureus posing a serious public health threat. The golden carotenoid pigment of S. aureus, staphyloxanthin, promotes resistance to reactive oxygen species and host neutrophil-based killing, and early enzymatic steps in staphyloxanthin production resemble those for cholesterol biosynthesis. We determined the crystal structures of S. aureus dehydrosqualene synthase (CrtM) at 1.58 angstrom resolution, finding structural similarity to human squalene synthase (SQS). We screened nine SQS inhibitors and determined the structures of three, bound to CrtM. One, previously tested for cholesterol-lowering activity in humans, blocked staphyloxanthin biosynthesis in vitro (median inhibitory concentration approximately 100 nM), resulting in colorless bacteria with increased susceptibility to killing by human blood and to innate immune clearance in a mouse infection model. This finding represents proof of principle for a virulence factor-based therapy against S. aureus.


Asunto(s)
Antibacterianos/farmacología , Proteínas Bacterianas/antagonistas & inhibidores , Inhibidores Enzimáticos/farmacología , Farnesil Difosfato Farnesil Transferasa/antagonistas & inhibidores , Compuestos Organotiofosforados/farmacología , Infecciones Estafilocócicas/tratamiento farmacológico , Staphylococcus aureus/patogenicidad , Secuencia de Aminoácidos , Animales , Antibacterianos/síntesis química , Antibacterianos/química , Antibacterianos/uso terapéutico , Proteínas Bacterianas/química , Proteínas Bacterianas/aislamiento & purificación , Proteínas Bacterianas/metabolismo , Línea Celular , Proliferación Celular/efectos de los fármacos , Colesterol/biosíntesis , Cristalografía por Rayos X , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/metabolismo , Farnesil Difosfato Farnesil Transferasa/química , Farnesil Difosfato Farnesil Transferasa/aislamiento & purificación , Farnesil Difosfato Farnesil Transferasa/metabolismo , Humanos , Ratones , Datos de Secuencia Molecular , Compuestos Organotiofosforados/síntesis química , Compuestos Organotiofosforados/metabolismo , Compuestos Organotiofosforados/uso terapéutico , Fosfatos de Poliisoprenilo/química , Fosfatos de Poliisoprenilo/metabolismo , Estructura Secundaria de Proteína , Sesquiterpenos/química , Sesquiterpenos/metabolismo , Infecciones Estafilocócicas/microbiología , Staphylococcus aureus/efectos de los fármacos , Staphylococcus aureus/crecimiento & desarrollo , Staphylococcus aureus/metabolismo , Virulencia/efectos de los fármacos , Xantófilas/biosíntesis
18.
Nucleic Acids Res ; 36(5): 1567-77, 2008 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-18208836

RESUMEN

Expression of the gene cluster icaADBC is necessary for biofilm production in Staphylococcus epidermidis. The ica operon is negatively controlled by the repressor IcaR. Here, the crystal structure of IcaR was determined and the refined structure revealed a homodimer comprising entirely alpha-helices, typical of the tetracycline repressor protein family for gene regulations. The N-terminal domain contains a conserved helix-turn-helix DNA-binding motif with some conformational variations, indicating flexibility in this region. The C-terminal domain shows a complementary surface charge distribution about the dyad axis, ideal for efficient and specific dimer formation. The results of the electrophoretic mobility shift assay and isothermal titration calorimetry suggested that a 28 bp core segment of the ica operator is implicated in the cooperative binding of two IcaR dimers on opposite sides of the duplex DNA. Computer modeling based on the known DNA-complex structure of QacR and site-specific mutagenesis experiments showed that direct protein-DNA interactions are mostly conserved, but with slight variations for recognizing the different sequences. By interfering with the binding of IcaR to DNA, aminoglycoside gentamicin and other antibiotics may activate the icaADBC genes and elicit biofilm production in S. epidermidis, and likely S. aureus, as a defense mechanism.


Asunto(s)
Proteínas Bacterianas/química , Modelos Moleculares , Proteínas Represoras/química , Staphylococcus epidermidis/genética , Antibacterianos/farmacología , Proteínas Bacterianas/clasificación , Proteínas Bacterianas/genética , Biopelículas , Cristalografía por Rayos X , ADN/química , Mutación , Regiones Operadoras Genéticas , Unión Proteica , Estructura Terciaria de Proteína , Proteínas Represoras/clasificación , Proteínas Represoras/genética , Staphylococcus epidermidis/fisiología , Homología Estructural de Proteína
19.
Dev Biol ; 285(1): 238-51, 2005 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-16051212

RESUMEN

Cell sorting by differential cell adhesion and movement is a fundamental process in multicellular morphogenesis. We have identified a Dictyostelium discoideum gene encoding a novel protein, LrrA, which composes almost entirely leucine-rich repeats (LRRs) including a putative leucine zipper motif. Transcription of lrrA appeared to be developmentally regulated with robust expression during vegetative growth and early development. lrrA null cells generated by homologous recombination aggregated to form loose mounds, but subsequent morphogenesis was blocked without formation of the apical tip. The cells adhered poorly to a substratum and did not form tight cell-cell agglomerates in suspension; in addition, they were unable to polarize and exhibit chemotactic movement in the submerged aggregation and Dunn chamber chemotaxis assays. Fluorescence-conjugated phalloidin staining revealed that both vegetative and aggregation competent lrrA(-) cells contained numerous F-actin-enriched microspikes around the periphery of cells. Quantitative analysis of the fluorescence-stained F-actin showed that lrrA(-) cells exhibited a dramatically increase in F-actin as compared to the wild-type cells. When developed together with wild-type cells, lrrA(-) cells were unable to move to the apical tip and sorted preferentially to the rear and lower cup regions. These results indicate that LrrA involves in cytoskeleton remodeling, which is needed for normal chemotactic aggregation and efficient cell sorting during multicellular morphogenesis, particularly in the formation of apical tip.


Asunto(s)
Proteínas del Citoesqueleto/metabolismo , Dictyostelium/crecimiento & desarrollo , Dictyostelium/metabolismo , Proteínas Protozoarias/metabolismo , Actinas/genética , Actinas/metabolismo , Secuencias de Aminoácidos , Secuencia de Aminoácidos , Animales , Adhesión Celular , Quimiotaxis , Proteínas del Citoesqueleto/química , Proteínas del Citoesqueleto/genética , Dictyostelium/citología , Dictyostelium/genética , Regulación del Desarrollo de la Expresión Génica , Marcación de Gen , Genes Protozoarios , Datos de Secuencia Molecular , Proteínas Protozoarias/química , Proteínas Protozoarias/genética , Homología de Secuencia de Aminoácido
20.
Mol Microbiol ; 53(1): 81-91, 2004 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-15225305

RESUMEN

Non-mitochondrial citrate synthase catalyses citrate synthesis in the glyoxylate cycle in gluconeogenesis. Screening Dictyostelium discoideum mutants generated by insertional mutagenesis isolated a poor-growing mutant that displayed aberrant developmental morphology on bacterial lawns. Axenically grown mutants developed normally and formed mature fruiting bodies on buffered agar. The affected locus encoded a novel protein (CshA) that was homologous to glyoxysomal citrate synthase. cshA was expressed maximally during vegetative growth and gradually decreased through subsequent developmental stages. An in vitro citrate synthase assay revealed that cshA disruption resulted in a 50% reduction in enzyme activity, implicating CshA as an active citrate synthase. The amino-terminus of CshA was found to have an atypical mitochondrial targeting signal, instead containing a unique nonapeptide sequence (RINILANHL) that was homologous to the conserved peroxisomal targeting signal 2 (PTS2). CshA protein was shown to be localized in the peroxisomes, and the RINILANHL sequence only efficiently targeted the peroxisomal green fluorescent protein. The growth defect of cshA(-) cells was associated with the impairment of phagocytosis and fluid-phase endocytosis, independent from cytokinesis. Disrupted multicellular development on bacterial lawns resulted from the abnormal susceptibility to the environmental conditions, perhaps because of citrate insufficiency. Taken together, these results provide new insights into the function of peroxisomal citrate synthase in cell growth and multicellular development.


Asunto(s)
Citrato (si)-Sintasa/fisiología , Dictyostelium/crecimiento & desarrollo , Peroxisomas/fisiología , Transducción de Señal , Secuencia de Aminoácidos , Animales , Compartimento Celular , Diferenciación Celular , División Celular/genética , Citrato (si)-Sintasa/genética , Dictyostelium/citología , Dictyostelium/enzimología , Mitocondrias/enzimología , Datos de Secuencia Molecular
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