Flying foxes optimization with reinforcement learning for vehicle detection in UAV imagery.

Intelligent transportation systems (ITS) are globally installed in smart cities, which enable the next generation of ITS depending on the potential integration of autonomous and connected vehicles. Both technologies are being tested widely in various cities across the world. However, these two developing technologies are vital in allowing a fully automatic transportation system; it is necessary to automate other transportation and road components. Unmanned aerial vehicles (UAVs) or drones are utilized for many surveillance applications in the ITS. Detecting on-ground vehicles in drone images is significant for disaster rescue operations, traffic and parking management, and navigating uneven territories. This study presents a flying foxes optimization with deep learning-based vehicle detection and classification model on aerial images (FFODL-VDCAI) technique for ITS application. The main objective of the FFODL-VDCAI technique is to automate and accurately classify vehicles that exist in aerial images. Three primary processes are involved in the presented FFODL-VDCAI technique. Initially, the FFODL-VDCAI approach utilizes YOLO-GD (Ghost-Net and Depthwise convolution) for vehicle detection, where the YOLO-GD uses lightweight Ghost Net in place on the backbone network of YOLO-v4 and interchanges the conventional convolutional with depthwise separable convolutional and pointwise convolutional. Next, the FFO technique is used for hyperparameter tuning the Ghost Net technique. Finally, a deep Q-network (DQN) based reinforcement learning technique is used to classify detected vehicles effectively. A comprehensive simulation analysis of the FFODL-VDCAI methodology is conducted on the UAV image dataset. The performance validation of the FFODL-VDCAI methodology exhibited superior values of 96.15% and 92.03% under PSU and Stanford datasets concerning various aspects.

A Decomposition-Based Multi-Objective Flying Foxes Optimization Algorithm and Its Applications.

The flying foxes optimization (FFO) algorithm stimulated by the strategy used by flying foxes for subsistence in heat wave environments has shown good performance in the single-objective domain. Aiming to explore the effectiveness and benefits of the subsistence strategy used by flying foxes in solving optimization challenges involving multiple objectives, this research proposes a decomposition-based multi-objective flying foxes optimization algorithm (MOEA/D-FFO). It exhibits a great population management strategy, which mainly includes the following features. (1) In order to improve the exploration effectiveness of the flying fox population, a new offspring generation mechanism is introduced to improve the efficiency of exploration of peripheral space by flying fox populations. (2) A new population updating approach is proposed to adjust the neighbor matrices to the corresponding flying fox individuals using the new offspring, with the aim of enhancing the rate of convergence in the population. Through comparison experiments with classical algorithms (MOEA/D, NSGA-II, IBEA) and cutting-edge algorithms (MOEA/D-DYTS, MOEA/D-UR), MOEA/D-FFO achieves more than 11 best results. In addition, the experimental results under different population sizes show that the proposed algorithm is highly adaptable and has good application prospects in optimization problems for engineering applications.

Seasonal trends and population status of the highly threatened Pteropus livingstonii in the Comoros archipelago.

Flying foxes of the genus Pteropus, especially those inhabiting islands, face increasing pressure from anthropogenic threats. A first step to implementing effective conservation actions is to establish monitoring projects to understand a species' population status and trend. Pteropus species are highly affected by seasonality which further requires regular, repeated, and long-term data to understand population trends, and reactions to severe weather events. In the present case study, a regular, bi-annual population census was implemented on Comoros between 2016 and 2023 for the highly threatened Livingstone's fruit bat, Pteropus livingstonii, and compared the results of standardized monitoring to historical population data. Seasonality had a large impact on the number of bats found at roost sites, with more bats present in the wet season, but the data over the past eight years revealed no significant in- or decrease in the number of bats counted on the island Anjouan. We estimated around 1,200-1,500 bats on Anjouan and 300-400 bats on Mohéli, and found that landcover type has no measurable effect on population distribution at roost sites. Our study highlights the need for long-term surveys to understand past population trends and that single counts are not sufficient to draw final conclusions of a species' status.

Simultaneous identification of groundwater contaminant source and hydraulic parameters based on multilayer perceptron and flying foxes optimization.

Groundwater contaminant source identification (GCSI) has practical significance for groundwater remediation and liability. However, when applying the simulation-optimization method to precisely solve GCSI, the optimization model inevitably encounters the problems of high-dimensional unknown variables to identify, which might increase the nonlinearity. In particular, to solve such optimization models, the well-known heuristic optimization algorithms might fall into a local optimum, resulting in low accuracy of inverse results. For this reason, this paper proposes a novel optimization algorithm, namely, the flying foxes optimization (FFO) to solve the optimization model. We perform simultaneous identification of the release history of groundwater pollution sources and hydraulic conductivity and compare the results with those of the traditional genetic algorithm. In addition, to alleviate the massive computational load caused by the frequent invocation of the simulation model when solving the optimization model, we utilized the multilayer perception (MLP) to establish a surrogate model of the simulation model and compared it with the method of backpropagation algorithm (BP). The results show that the average relative error of the results of FFO is 2.12%, significantly outperforming the genetic algorithm (GA); the surrogate model of MLP can replace the simulation model for calculation with fitting accuracy of more than 0.999, which is better than the commonly used surrogate model of BP.

Original Leptospira spp. in island's native terrestrial mammals: A case study in Pteropus spp. bats of New Caledonia.

Leptospirosis is a bacterial zoonosis that occurs in tropical and subtropical regions worldwide. Chiroptera are known to be a formidable reservoir of zoonotic pathogens, including leptospires. The epidemiology of leptospirosis in bats in the Pacific Islands is poorly known, both in terms of prevalence and in terms of the bacterial strains involved. A strong host specificity between leptospiral strains and their mammalian reservoir is recognized. This phenomenon has notably been studied recently in bat communities, providing strong evidence of co-evolution. In New Caledonia, a biodiversity hotspot where leptospirosis is endemic and enzootic, Chiroptera are the only indigenous terrestrial mammals. In this study, we aimed to investigate leptospires associated with three flying fox species in New Caledonia. Kidneys and urine samples of Pteropus spp. from captures and seizures were analysed. Among 254 flying foxes analysed, 24 harboured pathogenic leptospires corresponding to an observed prevalence of 9.45% with 15.8% on the Main Island and 4.3% on Loyalty Islands. The analysis of the rrs gene, lfb1, and MLST sequences evidenced four distinct clusters of undescribed strains, likely corresponding to undescribed species. All four strains belong to the Group I of pathogenic Leptospira spp., which includes Leptospira interrogans, Leptospira noguchii, and Leptospira kirschneri. We detected pathogenic leptospires in all three Pteropus spp. studied (including two endemic species) with no evidence of host specificity in two co-roosting species. For a better understanding of Leptospira-host co-evolution, notably to genetically characterize and evaluate the virulence of these original bat-associated leptospires, it is essential to improve isolation techniques. Flying foxes are traditionally hunted and eaten in New Caledonia, a massive cause of bat-human interactions. Our results should encourage vigilance during these contacts to limit the spillover risk of these pathogens to humans.

Novel Hendra Virus Variant Circulating in Black Flying Foxes and Grey-Headed Flying Foxes, Australia.

A novel Hendra virus variant, genotype 2, was recently discovered in a horse that died after acute illness and in Pteropus flying fox tissues in Australia. We detected the variant in flying fox urine, the pathway relevant for spillover, supporting an expanded geographic range of Hendra virus risk to horses and humans.

Effects of Waning Maternal Immunity on Infection Dynamics in Seasonally Breeding Wildlife.

Increasing outbreaks of emerging infectious diseases originating from wildlife have intensified interests in understanding their dynamics in reservoir hosts. The effect of waning maternally derived antibodies on epidemics in a seasonally breeding wild mammal population is unclear. We examined how the population structure, influenced by seasonal breeding and maternally derived immunity, affects viral invasion and persistence using a hypothetical system based on Hendra virus infection in black flying foxes (Pteropus alecto). A deterministic Hendra virus epidemic model with uncertainty in parameter values was used to simulate transient epidemics following viral introduction into an infection-free population, including various timings within a year and differences in pre-existing seroprevalence. Additionally, we applied different modelling methods of waning maternal immunity to examine whether different models notably affected modelling outputs. The waning of maternally derived immunity temporally dispersed the supply of susceptible individuals in seasonally breeding populations, diminishing the effect of birth pulses generating the temporally synchronised supply of susceptible newborns. Thus, even in a population with seasonal births, a considerable level of probabilities of viral invasion and persistence could occur no matter when infectious individuals were introduced into the population. Viral invasion and persistence were substantially influenced by the modelling method of maternally derived immunity, emphasising the need to select an appropriate method and further investigate the waning pattern of maternally derived antibodies.

Detection of Tioman Virus in Pteropus vampyrus Near Flores, Indonesia.

Diverse paramyxoviruses have coevolved with their bat hosts, including fruit bats such as flying foxes (Chiroptera: Pteropodidae). Several of these viruses are zoonotic, but the diversity and distribution of Paramyxoviridae are poorly understood. We screened pooled feces samples from three Pteropus vampyrus colonies and assayed tissues, rectal swabs, and oral swabs from 95 individuals of 23 pteropodid species sampled at 17 sites across the Indonesian archipelago with a conventional paramyxovirus PCR; all tested negative. Samples from 43 individuals were screened with next generation sequencing (NGS), and a single Pteropus vampyrus collected near Flores had Tioman virus sequencing reads. Tioman virus is a bat-borne virus in the genus Pararubulavirus with prior evidence of spillover to humans. This work expands the known range of Tioman virus, and it is likely that this isolated colony likely has sustained intergenerational transmission over a long period.

Hendra Virus Infection in Horses: A Review on Emerging Mystery Paramyxovirus.

Hendra virus (HeV) is a zoonotic paramyxovirus which causes acute and deadly infection in horses (Equus caballus). It is a rare and unmanaged emerging viral infection in horses which is harbored by bats of the genus Pteropus (Australian flying foxes or fruit bats). The virus is pleomorphic in shape and its genome contains nonsegmented negative-stranded RNA with 18234 nucleotides in length. The virus is transmitted from flying foxes to horses, horse to horse, and horse to humans. Human-to-human transmission of HeV infection is not reported yet. The infection of HeV in horses is highly variable and shows broad range of signs and lesions including distinct respiratory and neurological disorders. Currently, there are no specific antiviral drugs available for the treatment of HeV infection in horses. Vaccination is considered as prime option to prevent HeV infection in horses. A subunit vaccine, called as "Equivac HeV vaccine" has been approved recently for preventing this viral infection in horses. In addition, a plethora of common preventive strategies could help restrict the inter- and intra-species transmission of HeV. Considering the scanty but severe fatality cases of this mystery virus as well as lack of proper attention by veterinary scientists, this review article spotlights not only on the clinical signs, transmission, epidemiology, biology, pathogenesis, and diagnosis of HeV but also the preventive managements of this uncommon infection in horses by vaccination and other precautious strategies.

The spleen morphophysiology of fruit bats.

Spleen is one of the important lymphoid organs with wide variations of morphological and physiological functions according to species. Morphology and function of the spleen in bats, which are hosts to several viral strains without exhibiting clinical symptoms, remain to be fully elucidated. This study aims to examine the spleen morphology of fruit bats associated with their physiological functions. Spleen histological observations were performed in three fruit bats species: Cynopterus titthaecheilus (n = 9), Rousettus leschenaultii (n = 3) and Pteropus vampyrus (n = 3). The spleens of these fruit bats were surrounded by a thin capsule. Red pulp consisted of splenic cord and wide vascular space filled with blood. Ellipsoids in all three studied species were found numerously and adjacent to one another forming macrophages aggregates. White pulp consisted of periarteriolar lymphoid sheaths (PALS), lymphoid follicles and marginal zone. The lymphoid follicle contained a germinal centre and a tingible body macrophage that might reflect an active immune system. The marginal zone was prominent and well developed. This study reports some differences in spleen structure of fruit bats compared to other bat species previously reported and discusses possible physiological implications of the spleen based on its morphology.

A spatial assessment of Nipah virus transmission in Thailand pig farms using multi-criteria decision analysis.

BACKGROUND: Thailand's Central Plain is identified as a contact zone between pigs and flying foxes, representing a potential zoonotic risk. Nipah virus (NiV) has been reported in flying foxes in Thailand, but it has never been found in pigs or humans. An assessment of the suitability of NiV transmission at the spatial and farm level would be useful for disease surveillance and prevention. Multi-criteria decision analysis (MCDA), a knowledge-driven model, was used to map contact zones between local epizootic risk factors as well as to quantify the suitability of NiV transmission at the pixel and farm level. RESULTS: Spatial risk factors of NiV transmission in pigs were identified by experts as being of three types, including i) natural host factors (bat preferred areas and distance to the nearest bat colony), ii) intermediate host factors (pig population density), and iii) environmental factors (distance to the nearest forest, distance to the nearest orchard, distance to the nearest water body, and human population density). The resulting high suitable areas were concentrated around the bat colonies in three provinces in the East of Thailand, including Chacheongsao, Chonburi, and Nakhonnayok. The suitability of NiV transmission in pig farms in the study area was quantified as ranging from very low to medium suitability. CONCLUSIONS: We believe that risk-based surveillance in the identified priority areas may increase the chances of finding out NiV and other bat-borne pathogens and thereby optimize the allocation of financial resources for disease surveillance. In the long run, improvements of biosecurity in those priority areas may also contribute to preventing the spread of potential emergence of NiV and other bat-borne pathogens.

The analysis of underivatized ß-Methylamino-L-alanine (BMAA), BAMA, AEG & 2,4-DAB in Pteropus mariannus mariannus specimens using HILIC-LC-MS/MS.

ß-Methylamino-L-alanine (BMAA) has been identified as the potential cause of the amyotrophic lateral sclerosis/parkinsonism-dementia complex (ALS/PDC) observed in the Chamorro people of Guam. The principal hypothesis for BMAA exposure and intoxication relies on the biomagnification of BMAA in flying fox specimens ingested by the Chamorro people. Although high levels of BMAA were quantitated in flying fox specimens utilizing liquid chromatography-fluorescence (LC-FL), there have not been any confirmatory analyses conducted to date. Therefore, a method for the tissue homogenization, extraction and direct analysis of BMAA (including BAMA, 2,4-DAB and AEG) was utilized. The approach was applied to mammalian dried skin and hair from various rodent species (negative controls) and archived flying fox (Pteropus mariannus mariannus) specimens. A positive control sample of homogenized mussel (Mytelius edulis) with native BMAA was used to verify the method. It was determined that the direct analysis using HILIC MS/MS required additional quality control in order to allow for the confident identification of BMAA due to the near co-elution of BAMA. BMAA was not present above 0.2 µg g-1 (free fraction) or 2.8 µg g-1 (total fraction) in the flying fox specimens. While analysis did not result in BMAA detection in flying fox or negative control samples, the positive control sample and spiked samples were successfully detected.

Conservation Values and Risk of Handling Bats: Implications for One Health Communication.

Flying-foxes provide critical ecosystem services, but their role as hosts to zoonotic pathogens may undermine conservation support. We surveyed 214 residents of Cairns, Australia, regarding their perceptions about health risks associated with flying-foxes and support for flying-fox conservation. Greater likelihood of handling a flying-fox was associated with lower knowledge about risks, greater conservation support, and environmental organization membership. Respondents less likely to seek medical attention after a minor scratch tended to be younger, unemployed and perceive lower risk. Individuals who support flying-fox conservation should be one group targeted in One Health communication integrating health and conservation messages.

Climate Change Could Increase the Geographic Extent of Hendra Virus Spillover Risk.

Disease risk mapping is important for predicting and mitigating impacts of bat-borne viruses, including Hendra virus (Paramyxoviridae:Henipavirus), that can spillover to domestic animals and thence to humans. We produced two models to estimate areas at potential risk of HeV spillover explained by the climatic suitability for its flying fox reservoir hosts, Pteropus alecto and P. conspicillatus. We included additional climatic variables that might affect spillover risk through other biological processes (such as bat or horse behaviour, plant phenology and bat foraging habitat). Models were fit with a Poisson point process model and a log-Gaussian Cox process. In response to climate change, risk expanded southwards due to an expansion of P. alecto suitable habitat, which increased the number of horses at risk by 175-260% (110,000-165,000). In the northern limits of the current distribution, spillover risk was highly uncertain because of model extrapolation to novel climatic conditions. The extent of areas at risk of spillover from P. conspicillatus was predicted shrink. Due to a likely expansion of P. alecto into these areas, it could replace P. conspicillatus as the main HeV reservoir. We recommend: (1) HeV monitoring in bats, (2) enhancing HeV prevention in horses in areas predicted to be at risk, (3) investigate and develop mitigation strategies for areas that could experience reservoir host replacements.

Response of primary and secondary rainforest flowers and fruits to a cyclone, and implications for plant-servicing bats.

The response of primary (PF) and secondary (SF) rainforests to cyclones has broad implications for servicing fauna and the resilience of forest functions. We collected fine-scale data on the reproductive phenology of plant communities in Fijian PF and SF in 12 monthly surveys before and after Cyclone Tomas (2010). We generated a resource index from the reproductive loads of 2218 trees and 1150 non-trees (>190 species) and trunk and stem diameter to assess patterns in resource abundance for nectarivores and frugivores (hereafter NF resources). We aimed to determine (i) whether species richness of NF resources differed between forests; (ii) the patterns of resilience of NF resources at community level in both forests after a cyclone; and (iii) the effect of response on NF resources for plant-servicing bats (Pteropodidae). In 12 months preceding the cyclone, NF resources were greater in PF trees; non-tree resources fluctuated and were greater in SF. Lower species richness of NF resources in SF indicated that fewer opportunities exist there for exploitation by a diverse fauna. More resources were available for bats in PF. In 12 months following the cyclone, PF flowers and fruits, and SF fruits specifically used by pteropodid bats decreased for trees. Non-tree resources were especially susceptible to the cyclone. No universal pattern of decline was associated with the cyclone; instead, some NF resources declined and others were resilient or responded rapidly to a post-cyclone environment. Both PF and SF demonstrated resilience at the community level via increased flower survival (PF) and rapid flower production (SF). Reduced species richness of NF resources in SF will compromise future resilience and response to disturbance, including for threatened pteropodid bat species. These findings are critical for long-term management of forests, given predicted increases in cyclone frequency and intensity associated with anthropogenic climate change.

Hendra Virus Spillover is a Bimodal System Driven by Climatic Factors.

Understanding environmental factors driving spatiotemporal patterns of disease can improve risk mitigation strategies. Hendra virus (HeV), discovered in Australia in 1994, spills over from bats (Pteropus sp.) to horses and thence to humans. Below latitude - 22°, almost all spillover events to horses occur during winter, and above this latitude spillover is aseasonal. We generated a statistical model of environmental drivers of HeV spillover per month. The model reproduced the spatiotemporal pattern of spillover risk between 1994 and 2015. The model was generated with an ensemble of methods for presence-absence data (boosted regression trees, random forests and logistic regression). Presences were the locations of horse cases, and absences per spatial unit (2.7 × 2.7 km pixels without spillover) were sampled with the horse census of Queensland and New South Wales. The most influential factors indicate that spillover is associated with both cold-dry and wet conditions. Bimodal responses to several variables suggest spillover involves two systems: one above and one below a latitudinal area close to - 22°. Northern spillovers are associated with cold-dry and wet conditions, and southern with cold-dry conditions. Biologically, these patterns could be driven by immune or behavioural changes in response to food shortage in bats and horse husbandry. Future research should look for differences in these traits between seasons in the two latitudinal regions. Based on the predicted risk patterns by latitude, we recommend enhanced preventive management for horses from March to November below latitude 22° south.

Foraging dispersion of Ryukyu flying-foxes and relationships with fig abundance in East-Asian subtropical island forests.

BACKGROUND: Figs are widely distributed key resources to many tropical-subtropical animals, and flying-foxes are major consumers and seed dispersers of figs. Bat-fig interrelationships, however, may vary among species differing in fruiting traits, i.e., bat- versus bird-dispersed figs. We examined Ryukyu flying-fox foraging dispersion and the relationships with tree species composition and fig abundance in forests of Iriomote Island. RESULTS: Bat foraging dispersion showed no spatial patterns with respect to different areas of the island, and was not explained by heterogeneity, density, or basal area (BA) of total trees, nor by relative density or BA of fruiting trees or total fruiting figs among sites. Instead, bat densities were positively dependent on the relative density of total figs, and particularly the relative BA of bat-dispersed figs Ficus septica and F. variegata. Both species were dominant figs in forests, fruiting asynchronously with long crop seasons, and were used as predominant foods. Bats foraged mostly solitarily and the mean density was in a hump-shaped relationship with crop sizes of the dominant bat-figs. These two species and Ficus benguetensis are larger-sized bat-figs, all contained more seeds, higher dry-pulp mass and water mass, but not necessarily water content. By approximate estimation, higher proportions of seeds of these bat-figs would have been removed from fruits through the bat consumption, than that of small-sized bird-figs like F. virgata, F. superba, and F. microcarpa. CONCLUSIONS: The foraging dispersion of Ryukyu flying-foxes in forests depends on the availability of the most abundant bat-figs that serve as predominant foods. Intermediate levels of crop sizes of theses figs appear most fit with their solitary foraging. Our results suggest that as density and BA coverage of these dominant bat-figs are below a certain level, their effectiveness to attract bats may dwindle and so would their chance of dispersal by bats.

Trypanosomiasis in an Australian little red flying fox (Pteropus scapulatus).

CASE REPORT: An adult female Australian little red flying fox (Pteropus scapulatus) presented with icterus and anaemia. Examination of a blood smear revealed numerous trypanosomes 20.4-30.8 µm long with tapered ends. Necropsy and histological findings were consistent with trypanosome infection of lymphoid tissue and intravascular haemolysis. Sequence and phylogenetic analysis demonstrated this trypanosome species to be genetically distinct and most similar to Trypanosoma minasense and Trypanosoma rangeli (with a genetic distance of 1% at the 18S rRNA locus for both). CONCLUSION: To the authors' knowledge this is the first report of a trypanosome infection associated with clinical disease in bats.

Microclimates Might Limit Indirect Spillover of the Bat Borne Zoonotic Hendra Virus.

Infectious diseases are transmitted when susceptible hosts are exposed to pathogen particles that can replicate within them. Among factors that limit transmission, the environment is particularly important for indirectly transmitted parasites. To try and assess a pathogens' ability to be transmitted through the environment and mitigate risk, we need to quantify its decay where transmission occurs in space such as the microclimate harbouring the pathogen. Hendra virus, a Henipavirus from Australian Pteropid bats, spills-over to horses and humans, causing high mortality. While a vaccine is available, its limited uptake has reduced opportunities for adequate risk management to humans, hence the need to develop synergistic preventive measures, like disrupting its transmission pathways. Transmission likely occurs shortly after virus excretion in paddocks; however, no survival estimates to date have used real environmental conditions. Here, we recorded microclimate conditions and fitted models that predict temperatures and potential evaporation, which we used to simulate virus survival with a temperature-survival model and modification based on evaporation. Predicted survival was lower than previously estimated and likely to be even lower according to potential evaporation. Our results indicate that transmission should occur shortly after the virus is excreted, in a relatively direct way. When potential evaporation is low, and survival is more similar to temperature dependent estimates, transmission might be indirect because the virus can wait several hours until contact is made. We recommend restricting horses' access to trees during night time and reducing grass under trees to reduce virus survival.

No Evidence of Hendra Virus Infection in the Australian Flying-fox Ectoparasite Genus Cyclopodia.

Hendra virus (HeV) causes potentially fatal respiratory and/or neurological disease in both horses and humans. Although Australian flying-foxes of the genus Pteropus have been identified as reservoir hosts, the precise mechanism of HeV transmission has yet to be elucidated. To date, there has been limited investigation into the role of haematophagous insects as vectors of HeV. This mode of transmission is particularly relevant because Australian flying-foxes host the bat-specific blood-feeding ectoparasites of the genus Cyclopodia (Diptera: Nycteribiidae), also known as bat flies. Using molecular detection methods, we screened for HeV RNA in 183 bat flies collected from flying-foxes inhabiting a roost in Boonah, Queensland, Australia. It was subsequently demonstrated that during the study period, Pteropus alecto in this roost had a HeV RNA prevalence between 2 and 15% (95% CI [1, 6] to [8, 26], respectively). We found no evidence of HeV in any bat flies tested, including 10 bat flies collected from P. alecto in which we detected HeV RNA. Our negative findings are consistent with previous findings and provide additional evidence that bat flies do not play a primary role in HeV transmission.