Optimization of an RNA-Seq Differential Gene Expression Analysis Depending on Biological Replicate Number and Library Size.

Lamarre, Sophie; Frasse, Pierre; Zouine, Mohamed; Labourdette, Delphine; Sainderichin, Elise; Hu, Guojian; Le Berre-Anton, Véronique; Bouzayen, Mondher; Maza, Elie

Lamarre, Sophie; Frasse, Pierre; Zouine, Mohamed; Labourdette, Delphine; Sainderichin, Elise; Hu, Guojian; Le Berre-Anton, Véronique; Bouzayen, Mondher; Maza, Elie.

Afiliación

Lamarre S; LISBP, Centre National de la Recherche Scientifique, INRA, INSA, Université de Toulouse, Toulouse, France.
Frasse P; GBF, Université de Toulouse, INRA, Castanet-Tolosan, France.
Zouine M; GBF, Université de Toulouse, INRA, Castanet-Tolosan, France.
Labourdette D; LISBP, Centre National de la Recherche Scientifique, INRA, INSA, Université de Toulouse, Toulouse, France.
Sainderichin E; GBF, Université de Toulouse, INRA, Castanet-Tolosan, France.
Hu G; GBF, Université de Toulouse, INRA, Castanet-Tolosan, France.
Le Berre-Anton V; LISBP, Centre National de la Recherche Scientifique, INRA, INSA, Université de Toulouse, Toulouse, France.
Bouzayen M; GBF, Université de Toulouse, INRA, Castanet-Tolosan, France.
Maza E; GBF, Université de Toulouse, INRA, Castanet-Tolosan, France.

Front Plant Sci ; 9: 108, 2018.

Article en En | MEDLINE | ID: mdl-29491871

Palabras clave

RNA-Seq; biological replicates; differential gene expression analysis; false discovery rate; gene ontology enrichment analysis; library size; power; transcriptomics

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Texto completo: 1 Base de datos: MEDLINE Idioma: En Revista: Front Plant Sci Año: 2018 Tipo del documento: Article País de afiliación: Francia

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Texto completo: 1 Base de datos: MEDLINE Idioma: En Revista: Front Plant Sci Año: 2018 Tipo del documento: Article País de afiliación: Francia