FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.

Banerjee, Sagnik; Bhandary, Priyanka; Woodhouse, Margaret; Sen, Taner Z; Wise, Roger P; Andorf, Carson M

Banerjee, Sagnik; Bhandary, Priyanka; Woodhouse, Margaret; Sen, Taner Z; Wise, Roger P; Andorf, Carson M.

Afiliación

Banerjee S; Program in Bioinformatics and Computational Biology, Iowa State University, Ames, IA, 50011, USA.
Bhandary P; Department of Statistics, Iowa State University, Ames, IA, 50011, USA.
Woodhouse M; Program in Bioinformatics and Computational Biology, Iowa State University, Ames, IA, 50011, USA.
Sen TZ; Department of Genetics, Developmental and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Wise RP; Corn Insects and Crop Genetics Research Unit, USDA-Agricultural Research Service, Ames, IA, 50011, USA.
Andorf CM; Crop Improvement and Genetics Research Unit, USDA-Agricultural Research Service, Albany, CA, 94710, USA.

BMC Bioinformatics ; 22(1): 205, 2021 Apr 20.

Article en En | MEDLINE | ID: mdl-33879057

Asunto(s)

Eucariontes; Programas Informáticos; Eucariontes/genética; Genoma; Anotación de Secuencia Molecular; RNA-Seq; Análisis de Secuencia de ARN

Palabras clave

Changepoint detection; Eukaryotic gene annotation; Gene prediction; Genomics; Optimized RNA-Seq alignment; Transcriptomics

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Texto completo: 1 Base de datos: MEDLINE Asunto principal: Programas Informáticos / Eucariontes Tipo de estudio: Prognostic_studies / Risk_factors_studies Idioma: En Revista: BMC Bioinformatics Asunto de la revista: INFORMATICA MEDICA Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos

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