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Confidence score: a data-driven measure for inclusive systematic reviews considering unpublished preprints.
Tong, Jiayi; Luo, Chongliang; Sun, Yifei; Duan, Rui; Saine, M Elle; Lin, Lifeng; Peng, Yifan; Lu, Yiwen; Batra, Anchita; Pan, Anni; Wang, Olivia; Li, Ruowang; Marks-Anglin, Arielle; Yang, Yuchen; Zuo, Xu; Liu, Yulun; Bian, Jiang; Kimmel, Stephen E; Hamilton, Keith; Cuker, Adam; Hubbard, Rebecca A; Xu, Hua; Chen, Yong.
Afiliación
  • Tong J; The Center for Health Analytics and Synthesis of Evidence (CHASE), Department of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania, Philadelphia, PA 19104, United States.
  • Luo C; Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, The University of Pennsylvania, Philadelphia, PA 19104, United States.
  • Sun Y; Division of Public Health Sciences, Washington University School of Medicine in St Louis, St Louis, MO 63110, United States.
  • Duan R; Department of Biostatistics, Columbia University, New York City, NY 10032, United States.
  • Saine ME; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Harvard University, Cambridge, MA 02115, United States.
  • Lin L; Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, The University of Pennsylvania, Philadelphia, PA 19104, United States.
  • Peng Y; Department of Epidemiology and Biostatistics, University of Arizona, Tucson, AZ 85724, United States.
  • Lu Y; Department of Population Health Sciences, Weill Cornell Medicine, New York, NY 11101, United States.
  • Batra A; The Center for Health Analytics and Synthesis of Evidence (CHASE), Department of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania, Philadelphia, PA 19104, United States.
  • Pan A; Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, The University of Pennsylvania, Philadelphia, PA 19104, United States.
  • Wang O; The Graduate Group in Applied Mathematics and Computational Science, School of Arts and Sciences, University of Pennsylvania, Philadelphia, PA 19104, United States.
  • Li R; Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, The University of Pennsylvania, Philadelphia, PA 19104, United States.
  • Marks-Anglin A; Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, The University of Pennsylvania, Philadelphia, PA 19104, United States.
  • Yang Y; Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, The University of Pennsylvania, Philadelphia, PA 19104, United States.
  • Zuo X; Department of Computational Biomedicine, Cedars-Sinai Medical Center, West Hollywood, CA, United States.
  • Liu Y; Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, The University of Pennsylvania, Philadelphia, PA 19104, United States.
  • Bian J; Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, The University of Pennsylvania, Philadelphia, PA 19104, United States.
  • Kimmel SE; McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, United States.
  • Hamilton K; Peter O'Donnell Jr. School of Public Health, University of Texas Southwestern Medical Center, Dallas, TX 75390, United States.
  • Cuker A; Department of Health Outcomes & Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL 32611, United States.
  • Hubbard RA; Department of Epidemiology, College of Public Health & Health Professions and College of Medicine, University of Florida, Gainesville, FL 32610, United States.
  • Xu H; Department of Medicine, Hospital of the University of Pennsylvania, Philadelphia, PA 19104, United States.
  • Chen Y; Department of Medicine and Department of Pathology & Laboratory Medicine, Perelman School of Medicine, The University of Pennsylvania, Philadelphia, PA 19104, United States.
J Am Med Inform Assoc ; 31(4): 809-819, 2024 Apr 03.
Article en En | MEDLINE | ID: mdl-38065694
ABSTRACT

OBJECTIVES:

COVID-19, since its emergence in December 2019, has globally impacted research. Over 360 000 COVID-19-related manuscripts have been published on PubMed and preprint servers like medRxiv and bioRxiv, with preprints comprising about 15% of all manuscripts. Yet, the role and impact of preprints on COVID-19 research and evidence synthesis remain uncertain. MATERIALS AND

METHODS:

We propose a novel data-driven method for assigning weights to individual preprints in systematic reviews and meta-analyses. This weight termed the "confidence score" is obtained using the survival cure model, also known as the survival mixture model, which takes into account the time elapsed between posting and publication of a preprint, as well as metadata such as the number of first 2-week citations, sample size, and study type.

RESULTS:

Using 146 preprints on COVID-19 therapeutics posted from the beginning of the pandemic through April 30, 2021, we validated the confidence scores, showing an area under the curve of 0.95 (95% CI, 0.92-0.98). Through a use case on the effectiveness of hydroxychloroquine, we demonstrated how these scores can be incorporated practically into meta-analyses to properly weigh preprints.

DISCUSSION:

It is important to note that our method does not aim to replace existing measures of study quality but rather serves as a supplementary measure that overcomes some limitations of current approaches.

CONCLUSION:

Our proposed confidence score has the potential to improve systematic reviews of evidence related to COVID-19 and other clinical conditions by providing a data-driven approach to including unpublished manuscripts.
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Texto completo: 1 Base de datos: MEDLINE Asunto principal: COVID-19 Límite: Humans Idioma: En Revista: J Am Med Inform Assoc Asunto de la revista: INFORMATICA MEDICA Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos

Texto completo: 1 Base de datos: MEDLINE Asunto principal: COVID-19 Límite: Humans Idioma: En Revista: J Am Med Inform Assoc Asunto de la revista: INFORMATICA MEDICA Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos