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A reference genome, mitochondrial genome and associated transcriptomes for the critically endangered swift parrot ( Lathamus discolor).
Silver, Luke W; Stojanovic, Dejan; Farquharson, Katherine A; Alexander, Lauren; Peel, Emma; Belov, Katherine; Hogg, Carolyn J.
Afiliación
  • Silver LW; School of Life and Environmental Sciences, The University of Sydney, Sydney, New South Wales, 2006, Australia.
  • Stojanovic D; Fenner School of Environment and Society, Australian National University, Acton, Australian Capital Territory, 2601, Australia.
  • Farquharson KA; School of Life and Environmental Sciences, The University of Sydney, Sydney, New South Wales, 2006, Australia.
  • Alexander L; Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science,, The University of Sydney, Sydney, New South Wales, 2006, Australia.
  • Peel E; School of Life and Environmental Sciences, The University of Sydney, Sydney, New South Wales, 2006, Australia.
  • Belov K; Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science,, The University of Sydney, Sydney, New South Wales, 2006, Australia.
  • Hogg CJ; School of Life and Environmental Sciences, The University of Sydney, Sydney, New South Wales, 2006, Australia.
F1000Res ; 13: 251, 2024.
Article en En | MEDLINE | ID: mdl-39301273
ABSTRACT
The swift parrot ( Lathamus discolor) is a Critically Endangered migratory parrot that breeds in Tasmania and winters on the Australian mainland. Here we provide a reference genome assembly for the swift parrot. We sequence PacBio HiFi reads to create a high-quality reference assembly and identify a complete mitochondrial sequence. We also generate a reference transcriptome from five organs to inform genome annotation. The genome was 1.24 Gb in length and consisted of 847 contigs with a contig N50 of 18.97 Gb and L50 of 20 contigs. This study provides an annotated reference assembly and transcriptomic resources for the swift parrot to assist in future conservation genomic research.
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Texto completo: 1 Base de datos: MEDLINE Asunto principal: Loros / Especies en Peligro de Extinción / Genoma Mitocondrial / Transcriptoma Límite: Animals Idioma: En Revista: F1000Res Año: 2024 Tipo del documento: Article País de afiliación: Australia
Texto completo
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Base de datos: MEDLINE Asunto principal: Loros / Especies en Peligro de Extinción / Genoma Mitocondrial / Transcriptoma Límite: Animals Idioma: En Revista: F1000Res Año: 2024 Tipo del documento: Article País de afiliación: Australia