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1.
Molecules ; 26(11)2021 May 29.
Artigo em Inglês | MEDLINE | ID: mdl-34072383

RESUMO

Nuclear magnetic resonance (NMR) spectroscopy remains one of the core analytical platforms for metabolomics, providing complementary chemical information to others, such as mass spectrometry, and offering particular advantages in some areas of research on account of its inherent robustness, reproducibility, and phenomenal dynamic range [...].


Assuntos
Análise de Alimentos/métodos , Espectroscopia de Ressonância Magnética/métodos , Metabolômica/métodos , Animais , Cromatografia Líquida , Indústria Alimentícia , Tecnologia de Alimentos , Espectrometria de Massas/métodos , Carne/análise , Metaboloma , Análise Multivariada , Reprodutibilidade dos Testes , Solanum
2.
Org Biomol Chem ; 18(7): 1389-1401, 2020 02 19.
Artigo em Inglês | MEDLINE | ID: mdl-32002533

RESUMO

Acyl glucuronide metabolites have been implicated in the toxicity of several carboxylic acid-containing drugs, and the rate of their degradation via intramolecular transacylation and hydrolysis has been associated with the degree of protein adduct formation. Although not yet proven, the formation of protein adducts in vivo - and subsequent downstream effects - has been proposed as a mechanism of toxicity for carboxylic acid-containing xenobiotics capable of forming acyl glucuronides. A structurally-related series of metabolites, the acyl glucosides, have also been shown to undergo similar degradation reactions and consequently the potential to display a similar mode of toxicity. Here we report detailed kinetic models of each transacylation and hydrolysis reaction for a series of phenylacetic acid acyl glucuronides and their analogous acyl glucosides. Differences in reactivity were observed for the individual transacylation steps between the compound series; our findings suggest that the charged carboxylate ion and neutral hydroxyl group in the glucuronide and glucoside conjugates, respectively, are responsible for these differences. The transacylation reaction was modelled using density functional theory and the calculated activation energy for this reaction showed a close correlation with the degradation rate of the 1-ß anomer. Comparison of optimised geometries between the two series of conjugates revealed differences in hydrogen bonding which may further explain the differences in reactivity observed. Together, these models may find application in drug discovery for prediction of acyl glucuronide and glucoside metabolite behaviour.


Assuntos
Glucosídeos/química , Glucuronídeos/química , Modelos Químicos , Teoria da Densidade Funcional , Cinética
3.
Angew Chem Int Ed Engl ; 59(52): 23615-23619, 2020 12 21.
Artigo em Inglês | MEDLINE | ID: mdl-32959941

RESUMO

Chirality plays a fundamental role in nature, but its detection and quantification still face many limitations. To date, the enantiospecific analysis of mixtures necessarily requires prior separation of the individual components. The simultaneous enantiospecific detection of multiple chiral molecules in a mixture represents a major challenge, which would lead to a significantly better understanding of the underlying biological processes; for example, via enantiospecifically analysing metabolites in their native environment. Here, we report on the first in situ enantiospecific detection of a thirty-nine-component mixture. As a proof of concept, eighteen essential amino acids at physiological concentrations were simultaneously enantiospecifically detected using NMR spectroscopy and a chiral solvating agent. This work represents a first step towards the simultaneous multicomponent enantiospecific analysis of complex mixtures, a capability that will have substantial impact on metabolism studies, metabolic phenotyping, chemical reaction monitoring, and many other fields where complex mixtures containing chiral molecules require efficient characterisation.


Assuntos
Espectroscopia de Ressonância Magnética/métodos , Estereoisomerismo
4.
Int J Cancer ; 143(6): 1335-1347, 2018 09 15.
Artigo em Inglês | MEDLINE | ID: mdl-29667176

RESUMO

Recent prospective studies have shown that dysregulation of the immune system may precede the development of B-cell lymphomas (BCL) in immunocompetent individuals. However, to date, the studies were restricted to a few immune markers, which were considered separately. Using a nested case-control study within two European prospective cohorts, we measured plasma levels of 28 immune markers in samples collected a median of 6 years before diagnosis (range 2.01-15.97) in 268 incident cases of BCL (including multiple myeloma [MM]) and matched controls. Linear mixed models and partial least square analyses were used to analyze the association between levels of immune marker and the incidence of BCL and its main histological subtypes and to investigate potential biomarkers predictive of the time to diagnosis. Linear mixed model analyses identified associations linking lower levels of fibroblast growth factor-2 (FGF-2 p = 7.2 × 10-4 ) and transforming growth factor alpha (TGF-α, p = 6.5 × 10-5 ) and BCL incidence. Analyses stratified by histological subtypes identified inverse associations for MM subtype including FGF-2 (p = 7.8 × 10-7 ), TGF-α (p = 4.08 × 10-5 ), fractalkine (p = 1.12 × 10-3 ), monocyte chemotactic protein-3 (p = 1.36 × 10-4 ), macrophage inflammatory protein 1-alpha (p = 4.6 × 10-4 ) and vascular endothelial growth factor (p = 4.23 × 10-5 ). Our results also provided marginal support for already reported associations between chemokines and diffuse large BCL (DLBCL) and cytokines and chronic lymphocytic leukemia (CLL). Case-only analyses showed that Granulocyte-macrophage colony stimulating factor levels were consistently higher closer to diagnosis, which provides further evidence of its role in tumor progression. In conclusion, our study suggests a role of growth-factors in the incidence of MM and of chemokine and cytokine regulation in DLBCL and CLL.


Assuntos
Biomarcadores/sangue , Linfoma Difuso de Grandes Células B/sangue , Mieloma Múltiplo/sangue , Adulto , Idoso , Estudos de Casos e Controles , Quimiocina CCL7/sangue , Quimiocina CX3CL1/sangue , Europa (Continente) , Feminino , Fator 2 de Crescimento de Fibroblastos/sangue , Seguimentos , Humanos , Incidência , Linfoma Difuso de Grandes Células B/diagnóstico , Linfoma Difuso de Grandes Células B/epidemiologia , Linfoma Difuso de Grandes Células B/imunologia , Masculino , Pessoa de Meia-Idade , Mieloma Múltiplo/diagnóstico , Mieloma Múltiplo/epidemiologia , Mieloma Múltiplo/imunologia , Análise Multivariada , Prognóstico , Estudos Prospectivos , Fator de Crescimento Transformador alfa/sangue , Fator A de Crescimento do Endotélio Vascular/sangue
5.
BMC Med ; 16(1): 202, 2018 11 08.
Artigo em Inglês | MEDLINE | ID: mdl-30404627

RESUMO

BACKGROUND: Environment and diet in early life can affect development and health throughout the life course. Metabolic phenotyping of urine and serum represents a complementary systems-wide approach to elucidate environment-health interactions. However, large-scale metabolome studies in children combining analyses of these biological fluids are lacking. Here, we sought to characterise the major determinants of the child metabolome and to define metabolite associations with age, sex, BMI and dietary habits in European children, by exploiting a unique biobank established as part of the Human Early-Life Exposome project ( http://www.projecthelix.eu ). METHODS: Metabolic phenotypes of matched urine and serum samples from 1192 children (aged 6-11) recruited from birth cohorts in six European countries were measured using high-throughput 1H nuclear magnetic resonance (NMR) spectroscopy and a targeted LC-MS/MS metabolomic assay (Biocrates AbsoluteIDQ p180 kit). RESULTS: We identified both urinary and serum creatinine to be positively associated with age. Metabolic associations to BMI z-score included a novel association with urinary 4-deoxyerythreonic acid in addition to valine, serum carnitine, short-chain acylcarnitines (C3, C5), glutamate, BCAAs, lysophosphatidylcholines (lysoPC a C14:0, lysoPC a C16:1, lysoPC a C18:1, lysoPC a C18:2) and sphingolipids (SM C16:0, SM C16:1, SM C18:1). Dietary-metabolite associations included urinary creatine and serum phosphatidylcholines (4) with meat intake, serum phosphatidylcholines (12) with fish, urinary hippurate with vegetables, and urinary proline betaine and hippurate with fruit intake. Population-specific variance (age, sex, BMI, ethnicity, dietary and country of origin) was better captured in the serum than in the urine profile; these factors explained a median of 9.0% variance amongst serum metabolites versus a median of 5.1% amongst urinary metabolites. Metabolic pathway correlations were identified, and concentrations of corresponding metabolites were significantly correlated (r > 0.18) between urine and serum. CONCLUSIONS: We have established a pan-European reference metabolome for urine and serum of healthy children and gathered critical resources not previously available for future investigations into the influence of the metabolome on child health. The six European cohort populations studied share common metabolic associations with age, sex, BMI z-score and main dietary habits. Furthermore, we have identified a novel metabolic association between threonine catabolism and BMI of children.


Assuntos
Metaboloma , Metabolômica/métodos , Criança , Estudos de Coortes , Europa (Continente) , Feminino , Humanos , Masculino , Valores de Referência
6.
Hum Genomics ; 11(1): 32, 2017 Dec 08.
Artigo em Inglês | MEDLINE | ID: mdl-29221465

RESUMO

The exposome is defined as "the totality of environmental exposures encountered from birth to death" and was developed to address the need for comprehensive environmental exposure assessment to better understand disease etiology. Due to the complexity of the exposome, significant efforts have been made to develop technologies for longitudinal, internal and external exposure monitoring, and bioinformatics to integrate and analyze datasets generated. Our objectives were to bring together leaders in the field of exposomics, at a recent Symposium on "Lifetime Exposures and Human Health: The Exposome," held at Yale School of Public Health. Our aim was to highlight the most recent technological advancements for measurement of the exposome, bioinformatics development, current limitations, and future needs in environmental health. In the discussions, an emphasis was placed on moving away from a one-chemical one-health outcome model toward a new paradigm of monitoring the totality of exposures that individuals may experience over their lifetime. This is critical to better understand the underlying biological impact on human health, particularly during windows of susceptibility. Recent advancements in metabolomics and bioinformatics are driving the field forward in biomonitoring and understanding the biological impact, and the technological and logistical challenges involved in the analyses were highlighted. In conclusion, further developments and support are needed for large-scale biomonitoring and management of big data, standardization for exposure and data analyses, bioinformatics tools for co-exposure or mixture analyses, and methods for data sharing.


Assuntos
Exposição Ambiental , Saúde Ambiental , Monitoramento Ambiental/métodos , Humanos , Saúde Pública , Sociedades Científicas
7.
Mutagenesis ; 30(6): 755-62, 2015 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-26290610

RESUMO

The human metabolome-the complement of small molecule metabolites present in biofluids and tissues-represents a significant part of the internal chemical milieu and is therefore an important aspect of the human exposome. Metabolic profiling approaches, commonly referred to as metabonomics or metabolomics, permit detailed and efficient characterisation of human biospecimens; application to population studies holds great promise for uncovering new associations and causal relationships between environmental factors and chronic disease. In addition to the insight metabolic information can provide, metabolic phenotypes anchor other molecular readouts and help formulate a systems-level interpretation of biological phenomena. In this commentary, we discuss the general approach for applying metabolic profiling in exposome studies, alongside recent exemplars. We also comment on the complexity and dynamism of the metabolome and highlight both the limitations such properties impart and the requirements for dealing with such issues in real-world phenotyping studies. Given that several large-scale exposome studies are now underway, we offer a perspective on current and future challenges that will need to be addressed to maximise their utility in environmental health research.


Assuntos
Exposição Ambiental , Metaboloma , Metabolômica , Animais , Suscetibilidade a Doenças , Saúde Ambiental/métodos , Interação Gene-Ambiente , Humanos , Redes e Vias Metabólicas , Metabolômica/métodos , Pesquisa
8.
J Pharm Biomed Anal ; 246: 116238, 2024 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-38805849

RESUMO

Drugs and drug metabolites containing a carboxylic-acid moiety can undergo in vivo conjugation to form 1-ß-O-acyl-glucuronides (1-ß-O-AGs). In addition to hydrolysis, these conjugates can undergo spontaneous acyl migration, and anomerisation reactions, resulting in a range of positional isomers. Facile transacylation has been suggested as a mechanism contributing to the toxicity of acyl glucuronides, with the kinetics of these processes thought to be a factor. Previous 1H NMR spectroscopic and HPLC-MS studies have been conducted to measure the degradation rates of the 1-ß-O-AGs of three nonsteroidal anti-inflammatory drugs (ibufenac, R-ibuprofen, S-ibuprofen) and a dimethyl-analogue (termed here as "bibuprofen"). These studies have also determined the relative contributions of hydrolysis and acyl migration in both buffered aqueous solution, and human plasma. Here, a detailed kinetic analysis is reported, providing the individual rate constants for the acyl migration and hydrolysis reactions observed in buffer for each of the 4 AGs, together with the overall degradation rate constants of the parent 1-ß-O-AGs. Computational modelling of the reactants and transition states of the transacylation reaction using density functional theory indicated differences in the activation energies that reflected the influence of both substitution and stereochemistry on the rate of transacylation/hydrolysis.


Assuntos
Desenho de Fármacos , Glucuronídeos , Ibuprofeno , Ibuprofeno/química , Hidrólise , Acilação , Glucuronídeos/química , Humanos , Anti-Inflamatórios não Esteroides/química , Cinética , Espectroscopia de Ressonância Magnética/métodos , Química Computacional/métodos , Espectroscopia de Prótons por Ressonância Magnética/métodos , Cromatografia Líquida de Alta Pressão/métodos
9.
J Proteome Res ; 12(6): 2732-41, 2013 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-23641669

RESUMO

The development of hepatoma-based in vitro models to study hepatocyte physiology is an invaluable tool for both industry and academia. Here, we develop an in vitro model based on the HepG2 cell line that produces chenodeoxycholic acid, the main bile acid in humans, in amounts comparable to human hepatocytes. A combination of adenoviral transfections for CCAAT/enhancer-binding protein ß (C/EBPß), hepatocyte nuclear factor 4α (HNF4α), and constitutive androstane receptor (CAR) decreased intracellular glutamate, succinate, leucine, and valine levels in HepG2 cells, suggestive of a switch to catabolism to increase lipogenic acetyl CoA and increased anaplerosis to replenish the tricarboxylic acid cycle. Transcripts of key genes involved in bile acid synthesis were significantly induced by approximately 160-fold. Consistently, chenodeoxycholic acid production rate was increased by more than 20-fold. Comparison between mRNA and bile acid levels suggest that 12-alpha hydroxylation of 7-alpha-hydroxy-4-cholesten-3-one is the limiting step in cholic acid synthesis in HepG2 cells. These data reveal that introduction of three hepatocyte-related transcription factors enhance anabolic reactions in HepG2 cells and provide a suitable model to study bile acid biosynthesis under pathophysiological conditions.


Assuntos
Proteína beta Intensificadora de Ligação a CCAAT/metabolismo , Ácido Quenodesoxicólico/biossíntese , Perfilação da Expressão Gênica , Fator 4 Nuclear de Hepatócito/metabolismo , Metabolômica , Receptores Citoplasmáticos e Nucleares/metabolismo , Acetilcoenzima A/metabolismo , Adenoviridae/genética , Aminoácidos/metabolismo , Proteína beta Intensificadora de Ligação a CCAAT/genética , Receptor Constitutivo de Androstano , Expressão Gênica , Vetores Genéticos , Células Hep G2 , Fator 4 Nuclear de Hepatócito/genética , Humanos , Espectroscopia de Ressonância Magnética , Modelos Biológicos , Receptores Citoplasmáticos e Nucleares/genética , Transfecção
10.
Anal Chem ; 85(14): 6674-81, 2013 Jul 16.
Artigo em Inglês | MEDLINE | ID: mdl-23730812

RESUMO

A strategy for evaluating the performance of quantitative spectral analysis tools in conditions that better approximate background variation in a metabonomics experiment is presented. Three different urine samples were mixed in known proportions according to a {3, 3} simplex lattice experimental design and analyzed in triplicate by 1D (1)H NMR spectroscopy. Fifty-four urinary metabolites were subsequently quantified from the sample spectra using two methods common in metabolic profiling studies: (1) targeted spectral fitting and (2) targeted spectral integration. Multivariate analysis using partial least-squares (PLS) regression showed the latent structure of the spectral set recapitulated the experimental mixture design. The goodness-of-prediction statistic (Q(2)) of each metabolite variable in a PLS model was calculated as a metric for the reliability of measurement, across the sample compositional space. Several metabolites were observed to have low Q(2) values, largely as a consequence of their spectral resonances having low s/n or strong overlap with other sample components. This strategy has the potential to allow evaluation of spectral features obtained from metabolic profiling platforms in the context of the compositional background found in real biological sample sets, which may be subject to considerable variation. We suggest that it be incorporated into metabolic profiling studies to improve the estimation of matrix effects that confound accurate metabolite measurement. This novel method provides a rational basis for exploiting information from several samples in an efficient manner and avoids the use of multiple spike-in authentic standards, which may be difficult to obtain.


Assuntos
Espectroscopia de Ressonância Magnética/métodos , Metaboloma/fisiologia , Urinálise/métodos , Animais , Líquidos Corporais/química , Humanos , Prótons , Distribuição Aleatória , Ratos , Ratos Sprague-Dawley
11.
Xenobiotica ; 43(9): 792-802, 2013 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-23384072

RESUMO

A novel stepwise classification approach for predicting the metabolic fate of substituted anilines, based on calculated physicochemical parameters of the parent anilines, was developed. Based on multivariate pattern recognition methods (PLS-DA or soft independent modelling of class analogy [SIMCA]), these models allowed prediction of N-acetylation and subsequent N-oxanilic acid formation. These classification methods provided an improved classification success when compared with existing quantitative structure-metabolism relationship models for substituted anilines. Modelling the physicochemical properties of the N-acetylated compounds was considered as an addition to the stepwise model. Inclusion of parameters describing the N-acetyl moiety had little effect on the predictive ability of a stepwise parent to N-acetyl to N-oxanilic acid PLS-DA model, and had a negative impact on that of SIMCA models. This was attributed to the relatively small contribution to the total parameter variance caused by differences arising as a result of N-acetylation compared to the contribution made by the substituent effects. Calculation of physicochemical properties incorporating the effect of solvation using ab initio methods improved the classification model in terms of both the visual separation in multivariate projections and prediction accuracy.


Assuntos
Compostos de Anilina/metabolismo , Acetilação , Compostos de Anilina/química , Simulação por Computador , Modelos Químicos , Estrutura Molecular , Análise Multivariada
12.
Anal Chem ; 84(6): 2868-74, 2012 Mar 20.
Artigo em Inglês | MEDLINE | ID: mdl-22320312

RESUMO

Differences in molecular chirality remain an important issue in drug metabolism and pharmacokinetics for the pharmaceutical industry and regulatory authorities, and chirality is an important feature of many endogenous metabolites. We present a method for the rapid, direct differentiation and identification of chiral drug enantiomers in human urine without pretreatment of any kind. Using the well-known anti-inflammatory chemical ibuprofen as one example, we demonstrate that the enantiomers of ibuprofen and the diastereoisomers of one of its main metabolites, the glucuronidated carboxylate derivative, can be resolved by (1)H NMR spectroscopy as a consequence of direct addition of the chiral cosolvating agent (CSA) ß-cyclodextrin (ßCD). This approach is simple, rapid, and robust, involves minimal sample manipulation, and does not require derivatization or purification of the sample. In addition, the method should allow the enantiodifferentiation of endogenous chiral metabolites, and this has potential value for differentiating metabolites from mammalian and microbial sources in biofluids. From these initial findings, we propose that more extensive and detailed enantiospecific metabolic profiling could be possible using CSA-NMR spectroscopy than has been previously reported.


Assuntos
Anti-Inflamatórios não Esteroides/urina , Ibuprofeno/urina , Espectroscopia de Ressonância Magnética/métodos , Metabolômica/métodos , beta-Ciclodextrinas/química , Anti-Inflamatórios não Esteroides/química , Anti-Inflamatórios não Esteroides/metabolismo , Humanos , Ibuprofeno/química , Ibuprofeno/metabolismo , Espectroscopia de Ressonância Magnética/economia , Metabolômica/economia , Estereoisomerismo , Fatores de Tempo
13.
BMC Med ; 10: 61, 2012 Jun 19.
Artigo em Inglês | MEDLINE | ID: mdl-22713677

RESUMO

BACKGROUND: The 'exposome' represents the accumulation of all environmental exposures across a lifetime. Top-down strategies are required to assess something this comprehensive, and could transform our understanding of how environmental factors affect human health. Metabolic profiling (metabonomics/metabolomics) defines an individual's metabolic phenotype, which is influenced by genotype, diet, lifestyle, health and xenobiotic exposure, and could also reveal intermediate biomarkers for disease risk that reflect adaptive response to exposure. We investigated changes in metabolism in volunteers living near a point source of environmental pollution: a closed zinc smelter with associated elevated levels of environmental cadmium. METHODS: High-resolution ¹H NMR spectroscopy (metabonomics) was used to acquire urinary metabolic profiles from 178 human volunteers. The spectral data were subjected to multivariate and univariate analysis to identify metabolites that were correlated with lifestyle or biological factors. Urinary levels of 8-oxo-deoxyguanosine were also measured, using mass spectrometry, as a marker of systemic oxidative stress. RESULTS: Six urinary metabolites, either associated with mitochondrial metabolism (citrate, 3-hydroxyisovalerate, 4-deoxy-erythronic acid) or one-carbon metabolism (dimethylglycine, creatinine, creatine), were associated with cadmium exposure. In particular, citrate levels retained a significant correlation to urinary cadmium and smoking status after controlling for age and sex. Oxidative stress (as determined by urinary 8-oxo-deoxyguanosine levels) was elevated in individuals with high cadmium exposure, supporting the hypothesis that heavy metal accumulation was causing mitochondrial dysfunction. CONCLUSIONS: This study shows evidence that an NMR-based metabolic profiling study in an uncontrolled human population is capable of identifying intermediate biomarkers of response to toxicants at true environmental concentrations, paving the way for exposome research.


Assuntos
Cádmio/toxicidade , Exposição Ambiental , Estilo de Vida , Metabolômica , Mitocôndrias/metabolismo , 8-Hidroxi-2'-Desoxiguanosina , Biomarcadores/urina , Ácido Cítrico/urina , Desoxiguanosina/análogos & derivados , Desoxiguanosina/urina , Interação Gene-Ambiente , Humanos , Espectroscopia de Ressonância Magnética , Estresse Oxidativo
14.
PLoS Comput Biol ; 7(3): e1001113, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21483477

RESUMO

Using transcriptomic and metabolomic measurements from the NCI60 cell line panel, together with a novel approach to integration of molecular profile data, we show that the biochemical pathways associated with tumour cell chemosensitivity to platinum-based drugs are highly coincident, i.e. they describe a consensus phenotype. Direct integration of metabolome and transcriptome data at the point of pathway analysis improved the detection of consensus pathways by 76%, and revealed associations between platinum sensitivity and several metabolic pathways that were not visible from transcriptome analysis alone. These pathways included the TCA cycle and pyruvate metabolism, lipoprotein uptake and nucleotide synthesis by both salvage and de novo pathways. Extending the approach across a wide panel of chemotherapeutics, we confirmed the specificity of the metabolic pathway associations to platinum sensitivity. We conclude that metabolic phenotyping could play a role in predicting response to platinum chemotherapy and that consensus-phenotype integration of molecular profiling data is a powerful and versatile tool for both biomarker discovery and for exploring the complex relationships between biological pathways and drug response.


Assuntos
Antineoplásicos/farmacologia , Neoplasias/metabolismo , Transcrição Gênica , Biomarcadores/química , Carboplatina/farmacologia , Linhagem Celular Tumoral , Cisplatino/farmacologia , Biologia Computacional/métodos , Ensaios de Seleção de Medicamentos Antitumorais , Reações Falso-Positivas , Humanos , Lipoproteínas/metabolismo , Metabolômica , Análise de Sequência com Séries de Oligonucleotídeos , Compostos Organoplatínicos/farmacologia , Fenótipo
15.
Biomarkers ; 16(1): 83-8, 2011 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-21114379

RESUMO

BACKGROUND: Predictive disease risk biomarkers that can be linked to exposure have proved difficult to identify in case-control studies. METHODS: Parallel statistical analysis of the correlation between (1)H NMR profiles from plasma samples collected before disease onset (EPIC cohort), versus exposure to dietary compounds, and follow-up disease endpoints (colon and breast cancer) was performed. RESULTS: Metabonomic signatures associated with colon cancer and dietary fiber intake (a protective factor according to epidemiological studies) were identified. CONCLUSION: This implementation of the novel "meet-in-the-middle" analytical strategy indicates how case-control studies nested in prospectively collected cohorts may reveal intermediate biomarkers linking exposure and disease.


Assuntos
Biomarcadores/sangue , Estudos de Coortes , Projetos de Pesquisa Epidemiológica , Metaboloma , Biomarcadores/análise , Neoplasias da Mama/sangue , Neoplasias da Mama/epidemiologia , Estudos de Casos e Controles , Neoplasias do Colo/sangue , Neoplasias do Colo/epidemiologia , Dieta/estatística & dados numéricos , Fibras na Dieta/administração & dosagem , Fibras na Dieta/estatística & dados numéricos , Proteínas Alimentares/administração & dosagem , Feminino , Humanos , Espectroscopia de Ressonância Magnética , Epidemiologia Molecular , Plasma/química , Fatores de Risco , Fumar/efeitos adversos
16.
J Proteome Res ; 9(1): 413-9, 2010 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-19894772

RESUMO

Trichostatin A (TSA) is a histone deacetylase inhibitor that has antiproliferative and differentiation-inducing effects on cancer cells, and in cultures of primary hepatocytes has been shown to maintain xenobiotic metabolic capacity. Using an NMR-based metabolic profiling approach, we evaluated if the endogenous metabolome was stabilized and the normal metabolic phenotype retained in this model. Aqueous soluble metabolites were extracted from isolated rat hepatocytes after 44 and 92 h exposure to TSA (25 muM) together with time-matched controls and measured by (1)H NMR spectroscopy. Multivariate analysis showed a clear difference in the global metabolic profile over time in control samples, while the TSA treated group was more closely clustered at both time points, suggesting that treatment reduced the time related effect on metabolism that was observed in the control. TSA treatment was associated with decreases in glycerophosphocholine, 3-hydroxybutyric acid, glycine and adenosine, an increase in glycogen, and a reduction in the decrease of inosine, hypoxanthine, and glutathione over time. Collectively, our data suggest that TSA treatment reduces the loss of a normal metabolic phenotype in cultured primary hepatocytes, improving the model as a tool to study endogenous liver metabolism, xenobiotic metabolism, and potentially affecting the accuracy of all biological assays in this system.


Assuntos
Hepatócitos/efeitos dos fármacos , Hepatócitos/enzimologia , Inibidores de Histona Desacetilases/farmacologia , Ácidos Hidroxâmicos/farmacologia , Metaboloma/efeitos dos fármacos , Animais , Células Cultivadas , Histona Desacetilases/metabolismo , Análise Multivariada , Ressonância Magnética Nuclear Biomolecular , Ratos
17.
Drug Discov Today ; 25(9): 1639-1650, 2020 09.
Artigo em Inglês | MEDLINE | ID: mdl-32681884

RESUMO

Acyl glucuronidation is a common metabolic fate for acidic drugs and their metabolites and, because these metabolites are reactive, they have been linked to adverse drug reactions (ADRs) and drug withdrawals. However, alternative routes of metabolism leading to reactive metabolites (e.g., oxidations and acyl-CoA thioesters) mean that unambiguous proof that acyl glucuronides are toxic is lacking. Here, we review the synthesis and reactivity of these metabolites, and describe the use of molecular modelling and in vitro and in vivo reactivity assessment of acyl glucuronide reactivity. Based on the emerging structure-dependent differences in reactivity and protein adduction methods for risk assessment for acyl glucuronide-forming acid drugs or drug candidates in drug discovery/development are suggested.


Assuntos
Glucuronídeos , Acilação , Animais , Glucuronídeos/química , Glucuronídeos/metabolismo , Glucuronídeos/toxicidade , Humanos
18.
Metallomics ; 12(3): 371-386, 2020 03 25.
Artigo em Inglês | MEDLINE | ID: mdl-31915771

RESUMO

Studies have emphasised the importance of combustion-derived particles in eliciting adverse health effects, especially those produced by diesel vehicles. In contrast, few investigations have explored the potential toxicity of particles derived from tyre and brake wear, despite their significant contributions to total roadside particulate mass. The objective of this study was to compare the relative toxicity of compositionally distinct brake abrasion dust (BAD) and diesel exhaust particles (DEP) in a cellular model that is relevant to human airways. Although BAD contained considerably more metals/metalloids than DEP (as determined by inductively coupled plasma mass spectrometry) similar toxicological profiles were observed in U937 monocyte-derived macrophages following 24 h exposures to 4-25 µg ml-1 doses of either particle type. Responses to the particles were characterised by dose-dependent decreases in mitochondrial depolarisation (p ≤ 0.001), increased secretion of IL-8, IL-10 and TNF-α (p ≤ 0.05 to p ≤ 0.001) and decreased phagocytosis of S. aureus (p ≤ 0.001). This phagocytic deficit recovered, and the inflammatory response resolved when challenged cells were incubated for a further 24 h in particle-free media. These responses were abrogated by metal chelation using desferroxamine. At minimally cytotoxic doses both DEP and BAD perturbed bacterial clearance and promoted inflammatory responses in U937 cells with similar potency. These data emphasise the requirement to consider contributions of abrasion particles to traffic-related clinical health effects.


Assuntos
Poluentes Atmosféricos/imunologia , Poeira/imunologia , Inflamação/etiologia , Macrófagos/imunologia , Fagocitose , Poluentes Atmosféricos/efeitos adversos , Humanos , Inflamação/imunologia , Inflamação/patologia , Interleucina-10/imunologia , Interleucina-8/imunologia , Macrófagos/patologia , Tamanho da Partícula , Staphylococcus aureus/imunologia , Células U937
19.
Chem Res Toxicol ; 22(4): 717-25, 2009 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-19338340

RESUMO

2,3-dimethoxy-1,4-naphthoquinone (CAS-RN 6959-96-3) (DMNQ) and 2-methyl-1,4-naphthoquinone (CAS-RN 58-27-5) (MNQ:menadione) are effective one electron redox cycling chemicals in vitro. In addition, in vitro MNQ forms a thioether conjugate with glutathione by nucleophilic attack at the third carbon. In contrast, here we demonstrate that in vivo the major metabolic route is directly to the dihydronaphthoquinone for both DMNQ and MNQ followed by conjugation to mono- and di-glucuronides and sulfate. Analysis of urine and bile showed that glutathione conjugation of MNQ was only a very minor route of metabolism. DMNQ was distributed to all tissues including the brain, and MNQ was much less widely distributed. For DMNQ tissue half-life, in particular for the heart, was considerably longer than the plasma half-life. For both DMNQ and MNQ, urine 8-oxo-7,8-dihydro-2'-deoxyguanosine and liver transcriptomic analysis failed to show any evidence of redox stress. Oxidized glutathione (GSSG) in liver increased significantly at the 10 min postdosing time point only. Metabonomic analysis 96 h after DMNQ administration indicated decreased liver glucose and increased lactate and creatine suggesting an impairment of oxidative metabolism. We conclude that in vivo DMNQ and MNQ are primarily two electron reduced to the dihydronaphthoquinones and undergo little one electron redox cycling. For DMNQ, disruption of cellular oxidative metabolism may be a primary mechanism of toxicity rather than redox stress.


Assuntos
Fígado/metabolismo , Naftoquinonas/farmacocinética , Vitamina K 3/farmacocinética , Animais , Cromatografia Líquida , Creatinina/urina , Elétrons , Fígado/efeitos dos fármacos , Masculino , Metabolômica , Camundongos , Camundongos Endogâmicos C57BL , Naftoquinonas/administração & dosagem , Naftoquinonas/metabolismo , Estresse Oxidativo , Espectrometria de Massas em Tandem , Distribuição Tecidual , Transcrição Gênica , Vitamina K 3/administração & dosagem , Vitamina K 3/metabolismo
20.
Anal Chem ; 80(18): 7158-62, 2008 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-18702533

RESUMO

In biofluid NMR spectroscopy, the frequency of each resonance is typically calibrated by addition of a reference compound such as 3-(trimethylsilyl)-propionic acid- d 4 (TSP) to the sample. However biofluids such as serum cannot be referenced to TSP, due to shifts resonance caused by binding to macromolecules in solution. In order to overcome this limitation we have developed algorithms, based on analysis of derivative spectra, to locate and calibrate (1)H NMR spectra to the alpha-glucose anomeric doublet. We successfully used these algorithms to calibrate 77 serum (1)H NMR spectra and demonstrate the greater reproducibility of the calculated chemical-shift corrections ( r = 0.97) than those generated by manual alignment ( r = 0.8-0.88). Hence we show that these algorithms provide robust and reproducible methods of calibrating (1)H NMR of serum, plasma, or any biofluid in which glucose is abundant. Precise automated calibration of complex biofluid NMR spectra is an important tool in large-scale metabonomic or metabolomic studies, where hundreds or even thousands of spectra may be analyzed in high-resolution by pattern recognition analysis.


Assuntos
Algoritmos , Análise Química do Sangue/métodos , Espectroscopia de Ressonância Magnética/métodos , Automação , Glicemia/análise , Calibragem , Humanos , Fatores de Tempo
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