The Effect of Urban Green Spaces on Reduction of Particulate Matter Concentration.

In an urban scenario, one of the air pollutants most harmful to human health and environmental is the particulate matter (PM). Considering that urban green areas can contribute to mitigating the effects of PM, this work compares the concentration of PM2.5 in two closer locations in Rio de Janeiro, in order to verify how vegetation cover can actually improve air quality. One is the entrance to the Rebouças Tunnel (RT) and the other is the Rio de Janeiro Botanical Garden (RJBG). For this purpose, PM2.5 samples were taken from September 2017 to March 2018 using a Large Volume Sampler (LVS). The results reveal that RT has a higher concentration of PM2.5 in almost all samples. The RJBG obtains concentrations around 33% less than the other area, suggesting that the presence of urban green areas like the RJBG can reduce PM2.5 levels when compared to places with less vegetation cover, providing better air quality.

Prolonged Antibacterial Activity in Tannic Acid-Iron Complexed Chitosan Films for Medical Device Applications.

Healthcare-associated infections (HAIs) represent a global burden, leading to significant mortality and generating financial costs. One important cause of HAIs is the microbiological contamination of implantable medical devices. In this context, a novel antimicrobial drug-eluting system, based on chitosan and loaded with gentamicin, a broad-spectrum antibiotic, was developed. The effects of the addition of tannic acid and different FeSO4 concentrations on the loaded antibiotic release were evaluated. The properties of the films were assessed in terms of thickness, swelling, mass loss and wettability. The films' surface composition was characterized by X-ray photoelectron spectroscopy and Fourier-transform infrared spectroscopy. The antibiotic release in phosphate buffer saline was quantified by high-performance liquid chromatography-mass spectrometry, and the antibacterial activity was evaluated. Hemolysis and cytotoxicity were also assessed. The results showed that the addition of tannic acid and iron decreased the swelling degree and degradation due to strong interactions between the different components, thus impacting gentamicin release for up to 35 days. In conclusion, this study presents a novel strategy to produce low-cost and biocompatible antimicrobial drug-eluting systems with sustained and prolonged antibacterial activity over more than a month.

Gongylonema sp. in the Tongue of a Brown-Nosed Coati (Nasua nasua) from the Brazilian Atlantic Forest.

Two parasites were collected from the epithelial layer of the tongue mucosa of a brown-nosed coati (Nasua nasua) in an area of Atlantic Forest in Minas Gerais State, Brazil. These were identified as female Gongylonema sp. nematodes, not previously reported in Brazilian wild carnivores.

New species of Delicata (Molineidae: Anoplostrongylinae) parasite of Cabassous tatouay (Desmarest, 1804) from the Atlantic Forest, Rio de Janeiro, Brazil.

A new species of nematode parasite of the genus Delicata (Molineidae: Anoplostrongylinae) is described from the small intestine of a road-killed Greater Naked-tailed Armadillo Cabassous tatouay (Cingulata: Chlamyphoridae) on the BR-040 highway in Rio de Janeiro state, Brazil. The genus Delicata includes 13 species of parasitizing armadillos and anteaters distributed in Brazil, Argentina, and Trinidad and Tobago. The present species is distinguished from almost all species of Delicata by the longest length of the body, except for D. khalili and D. appendiculata. However, these can be distinguished from each other by the length of the spicules. The species that closely resembles, Delicata tatouay n. sp. is D. speciosa, but it can be distinguished by a robust branch from rays 2 and 3, rays 4 larger, and rays 8 longer compared to those of the new species. The new species is the only one with a tail, characterized by a terminal spine with rattlesnake tail-like transversal striations.

Towards Generalizability and Robustness in Biological Object Detection in Electron Microscopy Images.

Machine learning approaches have the potential for meaningful impact in the biomedical field. However, there are often challenges unique to biomedical data that prohibits the adoption of these innovations. For example, limited data, data volatility, and data shifts all compromise model robustness and generalizability. Without proper tuning and data management, deploying machine learning models in the presence of unaccounted for corruptions leads to reduced or misleading performance. This study explores techniques to enhance model generalizability through iterative adjustments. Specifically, we investigate a detection tasks using electron microscopy images and compare models trained with different normalization and augmentation techniques. We found that models trained with Group Normalization or texture data augmentation outperform other normalization techniques and classical data augmentation, enabling them to learn more generalized features. These improvements persist even when models are trained and tested on disjoint datasets acquired through diverse data acquisition protocols. Results hold true for transformerand convolution-based detection architectures. The experiments show an impressive 29% boost in average precision, indicating significant enhancements in the model's generalizibality. This underscores the models' capacity to effectively adapt to diverse datasets and demonstrates their increased resilience in real-world applications.

Segmentation of cellular ultrastructures on sparsely labeled 3D electron microscopy images using deep learning.

Focused ion beam-scanning electron microscopy (FIB-SEM) images can provide a detailed view of the cellular ultrastructure of tumor cells. A deeper understanding of their organization and interactions can shed light on cancer mechanisms and progression. However, the bottleneck in the analysis is the delineation of the cellular structures to enable quantitative measurements and analysis. We mitigated this limitation using deep learning to segment cells and subcellular ultrastructure in 3D FIB-SEM images of tumor biopsies obtained from patients with metastatic breast and pancreatic cancers. The ultrastructures, such as nuclei, nucleoli, mitochondria, endosomes, and lysosomes, are relatively better defined than their surroundings and can be segmented with high accuracy using a neural network trained with sparse manual labels. Cell segmentation, on the other hand, is much more challenging due to the lack of clear boundaries separating cells in the tissue. We adopted a multi-pronged approach combining detection, boundary propagation, and tracking for cell segmentation. Specifically, a neural network was employed to detect the intracellular space; optical flow was used to propagate cell boundaries across the z-stack from the nearest ground truth image in order to facilitate the separation of individual cells; finally, the filopodium-like protrusions were tracked to the main cells by calculating the intersection over union measure for all regions detected in consecutive images along z-stack and connecting regions with maximum overlap. The proposed cell segmentation methodology resulted in an average Dice score of 0.93. For nuclei, nucleoli, and mitochondria, the segmentation achieved Dice scores of 0.99, 0.98, and 0.86, respectively. The segmentation of FIB-SEM images will enable interpretative rendering and provide quantitative image features to be associated with relevant clinical variables.

Peg-Grafted Liposomes for L-Asparaginase Encapsulation.

L-asparaginase (ASNase) is an important biological drug used to treat Acute Lymphoblastic Leukemia (ALL). It catalyzes the hydrolysis of L-asparagine (Asn) in the bloodstream and, since ALL cells cannot synthesize Asn, protein synthesis is impaired leading to apoptosis. Despite its therapeutic importance, ASNase treatment is associated to side effects, mainly hypersensitivity and immunogenicity. Furthermore, degradation by plasma proteases and immunogenicity shortens the enzyme half-life. Encapsulation of ASNase in liposomes, nanostructures formed by the self-aggregation of phospholipids, is an attractive alternative to protect the enzyme from plasma proteases and enhance pharmacokinetics profile. In addition, PEGylation might prolong the in vivo circulation of liposomes owing to the spherical shielding conferred by the polyethylene (PEG) corona around the nanostructures. In this paper, ASNase was encapsulated in liposomal formulations composed by 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) or 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) containing or not different concentrations of 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N [methoxy (polyethylene glycol)-2000] (DSPE-PEG). Nanostructures of approximately 142-202 nm of diameter and polydispersity index (PDI) of 0.069 to 0.190 were obtained and the vesicular shape confirmed by Transmission Electron Microscopy (TEM and cryo-TEM). The encapsulation efficiency (%EE) varied from 10% to 16%. All formulations presented activity in contact with ASNase substrate, indicating the liposomes permeability to Asn and/or enzyme adsorption at the nanostructures' surface; the highest activity was observed for DMPC/DSPE-PEG 10%. Finally, we investigated the activity against the Molt 4 leukemic cell line and found a lower IC50 for the DMPC/DSPE-PEG 10% formulation in comparison to the free enzyme, indicating our system could provide in vivo activity while protecting the enzyme from immune system recognition and proteases degradation.

ATLANTIC ANTS: a data set of ants in Atlantic Forests of South America.

Ants, an ecologically successful and numerically dominant group of animals, play key ecological roles as soil engineers, predators, nutrient recyclers, and regulators of plant growth and reproduction in most terrestrial ecosystems. Further, ants are widely used as bioindicators of the ecological impact of land use. We gathered information of ant species in the Atlantic Forest of South America. The ATLANTIC ANTS data set, which is part of the ATLANTIC SERIES data papers, is a compilation of ant records from collections (18,713 records), unpublished data (29,651 records), and published sources (106,910 records; 1,059 references), including papers, theses, dissertations, and book chapters published from 1886 to 2020. In total, the data set contains 153,818 ant records from 7,636 study locations in the Atlantic Forest, representing 10 subfamilies, 99 genera, 1,114 ant species identified with updated taxonomic certainty, and 2,235 morphospecies codes. Our data set reflects the heterogeneity in ant records, which include ants sampled at the beginning of the taxonomic history of myrmecology (the 19th and 20th centuries) and more recent ant surveys designed to address specific questions in ecology and biology. The data set can be used by researchers to develop strategies to deal with different macroecological and region-wide questions, focusing on assemblages, species occurrences, and distribution patterns. Furthermore, the data can be used to assess the consequences of changes in land use in the Atlantic Forest on different ecological processes. No copyright restrictions apply to the use of this data set, but we request that authors cite this data paper when using these data in publications or teaching events.

Molecular eco-epidemiology of Paracoccidioides brasiliensis in road-killed mammals reveals Cerdocyon thous and Cuniculus paca as new hosts harboring this fungal pathogen.

Wild animals infected with Paracoccidioides brasiliensis represent important indicators of this fungal agent presence in the environment. The detection of this pathogen in road-killed wild animals has shown to be a key strategy for eco-epidemiological surveillance of paracoccidioidomycosis (PCM), helping to map hot spots for human infection. Molecular detection of P. brasiliensis in wild animals from PCM outbreak areas has not been performed so far. The authors investigated the presence of P. brasiliensis through nested-PCR in tissue samples obtained from road-killed animals collected nearby a human PCM outbreak spot, Rio de Janeiro state, Brazil and border areas. Eighteen species of mammals were analyzed: Dasypus novemcinctus (nine-banded armadillo, n = 6), Cerdocyon thous (crab-eating fox, n = 4), Coendou spinosus (hairy dwarf porcupine, n = 2), Lontra longicaudis (Neotropical river otter, n = 1), Procyon cancrivorus (crab-eating raccoon, n = 1), Galactis cuja (lesser grison, n = 1), Tamandua tetradactyla (collared anteater, n = 1), Cuniculus paca (paca, n = 1), and Bradypus variegatus (brown-throated three-toed sloth, n = 1). Specific P. brasiliensis sequences were detected in the liver, spleen, and lymph node samples from 4/6 (66.7%) D. novemcinctus, reinforcing the importance of these animals on Paracoccidioides ecology. Moreover, lymph nodes samples from two C. thous, as well as lung samples from the C. paca were also positive. A literature review of Paracoccidioides spp. in vertebrates in Brazil indicates C. thous and C. paca as new hosts for the fungal pathogen P. brasiliensis.

l-Asparaginase Encapsulation into Asymmetric Permeable Polymersomes.

This work reports, for the encapsulation of l-asparaginase, an anticancer enzyme into hybrid PMPC25-PDPA70/PEO16-PBO22 asymmetric polymersomes previously developed by our group, with loading capacities with over 800 molecules per vesicle. Enzyme-loaded polymersomes show permeability and capacity to hydrolyze l-asparagine, which is essential to cancer cells. The nanoreactors proposed in this work can be potentially used in further studies to develop novel therapeutic alternatives based on l-asparaginase.

Oslerus (Anafilaroides) sp. in a Jaguarundi (Puma yagouaroundi) from Brazil.

We report the occurrence of Oslerus (Anafilaroides) sp. parasitizing the lung of the jaguarundi (Puma yagouaroundi) in Brazil.

Influence of the incorporation of the antimicrobial agent polyhexamethylene biguanide on the properties of dense and porous chitosan-alginate membranes.

This work is a continuation of a previous study which described the development of dense and porous chitosan-alginate polyelectrolyte complexes through the addition of different amounts of Pluronic F68 to the polymeric mixture. The present study consisted in the incorporation of an antimicrobial agent, polyhexamethylene biguanide (PHMB), to the previously developed system. PHMB was incorporated at 1 and 10% (w/w) with high incorporation efficiencies, varying from 72 to 86%. Release profiles in phosphate buffered saline were evaluated using the Korsmeyer-Peppas equation, which suggested a quasi-Fickian diffusion mechanism for all obtained formulations. The maximum release percentage was approximately 15% as a result from the high affinity between PHMB and the polysaccharides. The obtained polyelectrolyte complexes were able to prevent the growth of both Staphylococcus aureus and Pseudomonas aeruginosa on their surfaces, being considered potentially effective wound dressings.

Medium to large-sized mammals of an urban protected area and its ecological corridor in Rio de Janeiro City, Brazil / Mamíferos de médio a grande porte de uma Unidade de Conservação urbana e seu corredor ecológico na cidade do Rio de Janeiro, Brasil

Abstract Protected areas play a fundamental role in the preservation of species, environmental education, and ecosystem services maintenance. Most of the world population live in urban areas, which highlight the importance of preserved areas in urban centers. However, many urban protected areas in Brazil lack species surveys, which limits biodiversity conservation and implementation of management plans. In this study, we surveyed the species of medium and large mammals of Chico Mendes Municipal Natural Park (MNP) and Canal das Taxas corridor through camera traps, thus providing the first comprehensive in situ survey of terrestrial mammals for the area. We also verified whether there was mammalian fauna exchange between the Chico Mendes and Marapendi MNPs through the vegetation corridor formed by the Canal das Taxas. Between November 2020 and July 2021, with a sampling effort of 1,334 trap-days, we recorded five native and five exotic species in the studied areas, including one Vulnerable species in the Municipality and State of Rio de Janeiro (Cuniculus paca). We also confirmed that Canal das Taxas works as a wildlife corridor for native species. Finally, we highlight that species checklists based on secondary information for the region are of limited usefulness and recommend in situ surveys even in small, urban protected areas of Rio de Janeiro city.

Resumo As áreas protegidas têm papel fundamental na preservação das espécies, na educação ambiental e na manutenção dos serviços ecossistêmicos. A maior parte da população mundial vive em áreas urbanas, o que evidencia a importância das áreas preservadas nos centros urbanos. No entanto, muitas áreas protegidas urbanas no Brasil carecem de levantamentos de espécies, o que limita a conservação da biodiversidade e a implementação de planos de manejo. Neste estudo, inventariamos as espécies de mamíferos de médio e grande porte do Parque Natural Municipal Chico Mendes e do corredor do Canal das Taxas por meio de armadilhas fotográficas, fornecendo assim o primeiro levantamento in situ abrangente de mamíferos terrestres para a área. Também verificamos se houve intercâmbio de fauna de mamíferos entre os parques Chico Mendes e Marapendi através do Canal das Taxas. Entre novembro de 2020 e julho de 2021, com um esforço amostral de 1.334 armadilhas-dia, registramos cinco espécies nativas e cinco espécies exóticas nas áreas de estudo, incluindo uma espécie Vulnerável no município e estado do Rio de Janeiro (Cuniculus paca). Confirmamos que o Canal das Taxas funciona como um corredor de fauna para espécies nativas. Por fim, ressaltamos que listas de espécies baseadas em informações secundárias para a região são de utilidade limitada e recomendamos levantamentos in situ, mesmo em pequenas Unidades de Conservação urbanas da cidade do Rio de Janeiro.

March or Die: road-killed herpetofauna along BR-040 highway, an ancient road on the Atlantic Forest from Southeastern Brazil / Marche ou Morra: herpetofauna atropelada ao longo da rodovia BR-040, uma antiga estrada na Mata Atlântica do Sudeste do Brasil

Abstract The construction of highways is responsible for access to previously protected areas, resulting in changes in landscape and dynamics of the animal populations that live in these areas. These enterprises are the major responsible for the mortality of wild animals, surpassing hunting and even the trafficking of animals. The objective of this study was to make a list that reflects the diversity of amphibians and reptile's road-killed along the BR-040, a highway that crosses the threaten lowland Atlantic Forest in Southeastern region of Brazil, including the use of microhabitats, lifestyle, activity pattern, reproductive cycles, and possible rare or endangered species. The study area consists of 180,4 km of highways. Monitoring began in 2006 and continues to the present day. A total of 1,410 individuals from 60 species were recorded in this study. The reptiles were more frequent in number of individuals and species. The commonest species recorded were Crotalus durissus and Dipsas mikanii. We have registered a single endangered species: Ranacephala hogei. The highest rates of road-kill were recorded during the wet season. Road-kills of fauna is a major threat to species, studies are of great importance to define plans that seek to mitigate the effects generated by these enterprises.

Resumo A construção de rodovias é responsável pelo acesso a áreas anteriormente protegidas, resultando em alterações na paisagem e na dinâmica das populações animais que vivem nessas áreas. Esses empreendimentos são os maiores responsáveis pela mortalidade de animais silvestres, superando a caça e até mesmo o tráfico de animais. O objetivo deste estudo foi realizar uma lista que reflita a diversidade de anfíbios e répteis atropelados ao longo da BR-040, uma rodovia que atravessa a ameaçada Mata Atlântica na região Sudeste do Brasil, incluindo o uso de microhabitats, estilo de vida, padrão de atividade, ciclos reprodutivos, e possíveis espécies raras ou ameaçadas. A área de estudo é constituída por 180,4 km de rodovias. O monitoramento começou em 2006 e segue até os dias atuais. Ao todo 1.410 indivíduos de 60 espécies foram registrados nesse estudo. Os répteis foram mais frequentes, em número de indivíduos e espécies. As espécies mais comumente registradas foram Crotalus durissus e Dipsas mikanii. Registramos uma espécie ameaçada de extinção: Ranacephala hogei. A maior taxa de atropelamento foi registrada durante a estação chuvosa. O atropelamento de fauna é uma grande ameaça as espécies, sendo de grande importância estudos para definição de planos que busquem mitigar os efeitos gerados por esses empreendimentos.

Helminth parasites of Galictis cuja (Carnivora, Mustelidae), from localities in the Atlantic forest of Brazil.

The current study aimed to investigate the helminth parasites of a population of Galictis cuja (Carnivora, Mustelidae) that occur in Atlantic Forest in the Southeastern region of Brazil. We necropsied 18 specimens of G. cuja, collected between January 2009 and May 2014, ran over victims on BR-040 highway, between the municipalities of Duque de Caxias, state of Rio de Janeiro and Juiz de Fora, state of Minas Gerais, localities inserted in Atlantic rainforest Biome. A total of six species of helminths were identified: Dioctophyme renale, Molineus elegans, Physaloptera sp., Strongyloides sp., Platynosomum illiciens, and Pachysentis gethi. Molineus elegans, Physaloptera sp. and P. illiciens were recorded for the first time in this host. Data provided in the current study when compared to the previous reports of parasitism by helminths in G. cuja in Brazil demonstrate that this study is the most representative with this host species.

Chitosan-alginate membranes accelerate wound healing.

The purpose of this study was to evaluate the efficacy of chitosan-alginate membrane to accelerate wound healing in experimental cutaneous wounds. Two wounds were performed in Wistar rats by punching (1.5 cm diameter), treated with membranes moistened with saline solution (CAM group) or with saline only (SL group). After 2, 7, 14, and 21 days of surgery, five rats of each group were euthanized and reepithelialization was evaluated. The wounds/scars were harvested for histological, flow cytometry, neutrophil infiltrate, and hydroxyproline analysis. CAM group presented higher inflammatory cells recruitment as compared to SL group on 2(nd) day. On the 7(th) day, CAM group showed higher CD11b(+) level and lower of neutrophils than SL group. The CAM group presented higher CD4(+) cells influx than SL group on 2(nd) day, but it decreased during the follow up and became lower on 14(th) and 21(st) days. Higher fibroplasia was noticed on days 7 and 14 as well as higher collagenesis on 21(st) in the CAM group in comparison to SL group. CAM group showed faster reepithelialization on 7(th) day than SL group, although similar in other days. In conclusion, chitosan-alginate membrane modulated the inflammatory phase, stimulated fibroplasia and collagenesis, accelerating wound healing process in rats.

Control of the properties of porous chitosan-alginate membranes through the addition of different proportions of Pluronic F68.

This work addresses the development and characterization of porous chitosan-alginate based polyelectrolyte complexes, obtained by using two different proportions of the biocompatible surfactant Pluronic F68. These biomaterials are proposed for applications as biodegradable and biocompatible wound dressing and/or scaffolds. The results indicate that thickness, roughness, porosity and liquid uptake of the membranes increase with the amount of surfactant used, while their mechanical properties and stability in aqueous media decrease. Other important properties such as color and surface hydrophilicity (water contact angle) are not significantly altered or did not present a clear tendency of variation with the increase of the amount of surfactant added to the polyelectrolyte complexes, such as real density, average pore diameter, total pore volume and surface area. The prepared biomaterials were not cytotoxic to L929 cells. In conclusion, it is possible to tune the physicochemical properties of chitosan-alginate polyelectrolyte complexes, through the variation of the proportion of surfactant (Pluronic F68) added to the mixture, so as to enable the desired application of these biomaterials.

Helminth parasites of Galictis cuja (Carnivora, Mustelidae), from localities in the Atlantic forest of Brazil / Helmintos parasitos de Galictis cuja (Carnivora, Mustelidae), em localidades de Mata Atlântica no Brasil

Abstract The current study aimed to investigate the helminth parasites of a population of Galictis cuja (Carnivora, Mustelidae) that occur in Atlantic Forest in the Southeastern region of Brazil. We necropsied 18 specimens of G. cuja, collected between January 2009 and May 2014, ran over victims on BR-040 highway, between the municipalities of Duque de Caxias, state of Rio de Janeiro and Juiz de Fora, state of Minas Gerais, localities inserted in Atlantic rainforest Biome. A total of six species of helminths were identified: Dioctophyme renale, Molineus elegans, Physaloptera sp., Strongyloides sp., Platynosomum illiciens, and Pachysentis gethi. Molineus elegans, Physaloptera sp. and P. illiciens were recorded for the first time in this host. Data provided in the current study when compared to the previous reports of parasitism by helminths in G. cuja in Brazil demonstrate that this study is the most representative with this host species.

Resumo O presente estudo teve como objetivo investigar a fauna de helmintos de uma população de Galictis cuja (Carnivora, Mustelidae) que ocorre em uma região de Mata Atlântica na região Sudeste do Brasil. Foram necropsiados 18 espécimes de G. cuja, coletados entre Janeiro de 2009 e Maio de 2014, que foram mortos acidentalmente por atropelamentos na rodovia BR-040, entre os municípios de Duque de Caxias, no Estado do Rio de Janeiro e Juiz de Fora, no Estado de Minas Gerais, localidades inseridas no Bioma Mata Atlântica. No total seis espécies de helmintos foram identificadas: Dioctophyme renale, Molineus elegans, Physaloptera sp, Strongyloides sp, Platynosomum illiciens e Pachysentis gethi. Molineus elegans, Physaloptera sp. e P. illiciens foram registradas pela primeira vez nesta espécie de hospedeiro. O estudo amplia a diversidade de helmintos conhecidos para o hospedeiro em questão. Os dados fornecidos no presente estudo quando comparados com os registros prévios de helmintos em G. cuja no Brasil demonstram que este estudo é o mais representativo com esta espécie de hospedeiro.