Detalhe da pesquisa
1.
Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study.
Proteomics
; 23(17): e2200323, 2023 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-37365936
2.
Enhanced conformational exploration of protein loops using a global parameterization of the backbone geometry.
J Comput Chem
; 44(11): 1094-1104, 2023 04 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-36733189
3.
Geometric constraints within tripeptides and the existence of tripeptide reconstructions.
J Comput Chem
; 44(13): 1236-1249, 2023 05 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-36999748
4.
Boosting the analysis of protein interfaces with multiple interface string alignments: Illustration on the spikes of coronaviruses.
Proteins
; 90(3): 848-857, 2022 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-34779026
5.
Tripeptide loop closure: A detailed study of reconstructions based on Ramachandran distributions.
Proteins
; 90(3): 858-868, 2022 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-34783395
6.
Studying dynamics without explicit dynamics: A structure-based study of the export mechanism by AcrB.
Proteins
; 89(3): 259-275, 2021 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-32960482
7.
Characterizing molecular flexibility by combining least root mean square deviation measures.
Proteins
; 87(5): 380-389, 2019 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-30663799
8.
Anti-interleukin-6 signalling therapy rebalances the disrupted cytokine production of B cells from patients with active rheumatoid arthritis.
Eur J Immunol
; 48(1): 194-203, 2018 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-28850672
9.
The structural bioinformatics library: modeling in biomolecular science and beyond.
Bioinformatics
; 33(7): 997-1004, 2017 04 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-28062450
10.
Unveiling Contacts within Macromolecular Assemblies by Solving Minimum Weight Connectivity Inference (MWC) Problems.
Mol Cell Proteomics
; 14(8): 2274-84, 2015 Aug.
Artigo
em Inglês
| MEDLINE | ID: mdl-25850436
11.
High-resolution crystal structures leverage protein binding affinity predictions.
Proteins
; 84(1): 9-20, 2016 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-26471944
12.
Hybridizing rapidly exploring random trees and basin hopping yields an improved exploration of energy landscapes.
J Comput Chem
; 37(8): 739-52, 2016 Mar 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-26714673
13.
Predicting binding poses and affinities for protein - ligand complexes in the 2015 D3R Grand Challenge using a physical model with a statistical parameter estimation.
J Comput Aided Mol Des
; 30(9): 791-804, 2016 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-27718029
14.
Energy landscapes and persistent minima.
J Chem Phys
; 144(5): 054109, 2016 Feb 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-26851910
15.
Conformational ensembles and sampled energy landscapes: Analysis and comparison.
J Comput Chem
; 36(16): 1213-31, 2015 Jun 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-25994596
16.
Teleost fish mount complex clonal IgM and IgT responses in spleen upon systemic viral infection.
PLoS Pathog
; 9(1): e1003098, 2013 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-23326228
17.
Probing a continuum of macro-molecular assembly models with graph templates of complexes.
Proteins
; 81(11): 2034-44, 2013 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-23609891
18.
Characterizing the morphology of protein binding patches.
Proteins
; 80(12): 2652-65, 2012 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-22806945
19.
Assessing the reconstruction of macromolecular assemblies with toleranced models.
Proteins
; 80(9): 2125-36, 2012 Aug.
Artigo
em Inglês
| MEDLINE | ID: mdl-22499530
20.
Gene prioritization based on random walks with restarts and absorbing states, to define gene sets regulating drug pharmacodynamics from single-cell analyses.
PLoS One
; 17(11): e0268956, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-36342924