Detalhe da pesquisa
1.
YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis.
Nucleic Acids Res
; 51(D1): D785-D791, 2023 01 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-36350610
2.
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.
Brief Bioinform
; 23(4)2022 07 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-35671510
3.
Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
Brief Bioinform
; 22(2): 1848-1859, 2021 03 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-32313939
4.
SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems.
Bioinformatics
; 37(21): 3702-3706, 2021 11 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-34179955
5.
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).
Bioinformatics
; 36(24): 5712-5718, 2021 04 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-32637990
6.
SBML Level 3: an extensible format for the exchange and reuse of biological models.
Mol Syst Biol
; 16(8): e9110, 2020 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-32845085
7.
In Silico Logical Modelling to Uncover Cooperative Interactions in Cancer.
Int J Mol Sci
; 22(9)2021 May 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-34063110
8.
Cooperative development of logical modelling standards and tools with CoLoMoTo.
Bioinformatics
; 31(7): 1154-9, 2015 Apr 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25619997
9.
A discrete model of Drosophila eggshell patterning reveals cell-autonomous and juxtacrine effects.
PLoS Comput Biol
; 10(3): e1003527, 2014 Mar.
Artigo
em Inglês
| MEDLINE | ID: mdl-24675973
10.
Modelling the onset of senescence at the G1/S cell cycle checkpoint.
BMC Genomics
; 15 Suppl 7: S7, 2014.
Artigo
em Inglês
| MEDLINE | ID: mdl-25573782
11.
Composition and abstraction of logical regulatory modules: application to multicellular systems.
Bioinformatics
; 29(6): 749-57, 2013 Mar 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-23341501
12.
Mapping multivalued onto Boolean dynamics.
J Theor Biol
; 270(1): 177-84, 2011 Feb 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-20868697
13.
Diversity and plasticity of Th cell types predicted from regulatory network modelling.
PLoS Comput Biol
; 6(9): e1000912, 2010 Sep 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-20824124
14.
Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae.
Sci Rep
; 10(1): 17744, 2020 10 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-33082399
15.
Hybrid Epithelial-Mesenchymal Phenotypes Are Controlled by Microenvironmental Factors.
Cancer Res
; 80(11): 2407-2420, 2020 06 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32217696
16.
Logical modelling of the role of the Hh pathway in the patterning of the Drosophila wing disc.
Bioinformatics
; 24(16): i234-40, 2008 Aug 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-18689831
17.
Segmenting the fly embryo: logical analysis of the role of the segment polarity cross-regulatory module.
Int J Dev Biol
; 52(8): 1059-75, 2008.
Artigo
em Inglês
| MEDLINE | ID: mdl-18956339
18.
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
J Integr Bioinform
; 16(2)2019 Jun 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-31219795
19.
Logical modelling of regulatory networks, methods and applications.
Bull Math Biol
; 75(6): 891-5, 2013 Jun.
Artigo
em Inglês
| MEDLINE | ID: mdl-23722297
20.
Logical modelling uncovers developmental constraints for primary sex determination of chicken gonads.
J R Soc Interface
; 15(142)2018 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-29792308