Clonal dynamics in a composite chronic lymphocytic leukemia and hairy cell leukemia-variant.

Composite lymphoma is the rare simultaneous manifestation of two distinct lymphomas. Chronic lymphocytic leukemia (CLL) has a propensity for occurring in composite lymphomas, a phenomenon that remains to be elucidated. We applied cytogenetics, droplet digital polymerase chain reaction, and massively parallel sequencing to analyze longitudinally a patient with CLL, who 3 years later showed transformation to a hairy cell leukemia-variant (HCL-V). Outgrowth of the IGHV4-34-positive HCL-V clone at the expense of the initially dominant CLL clone with trisomy 12 and MED12 mutation started before CLL-guided treatment and was accompanied by a TP53 mutation, which was already detectable at diagnosis of CLL. Furthermore, deep sequencing of IGH showed a composite lymphoma with presence of both disease components at all analyzed timepoints (down to a minor clone: major clone ratio of ~1:1000). Overall, our analyses showed a disease course that resembled clonal dynamics reported for malignancies with intratumoral heterogeneity and illustrate the utility of deep sequencing of IGH to detect distinct clonal populations at diagnosis, monitor clonal response to therapy, and possibly improve clinical outcomes.

Molecular phylogeny of the Neoplecostominae and Hypoptopomatinae (Siluriformes: Loricariidae) using multiple genes.

A phylogenetic analysis is provided for representatives of more than one hundred species of the catfish family Loricariidae, including nearly all genera of the subfamilies Neoplecostominae and Hypoptopomatinae. This analysis is based on fragments of the subunit 1 of the cytochrome c oxidase gene (COI), the recombination activating genes 1 (RAG1) and 2 (RAG2), and the F-Reticulon 4 gene. We obtained an alignment of 4678 contiguous nucleotides for 136 species of 50 loricariid genera from five loricariid subfamilies, and ten outgroup species from five loricarioid families. Our results from Maximum Parsimony, Maximum Likelihood, and Bayesian analyses show the following set of interrelationships ((((Hypoptopomatinae, Neoplecostominae) Hypostominae), Loricariinae) Delturinae). However, neither Hypoptopomatinae nor Neoplecostominae were recovered as monophyletic groups. A previously hypothesized monophyly of Hypoptopomatini and Otothyrini was refuted. Furthermore, the genera Pareiorhaphis, Pareiorhina, Hisonotus and Parotocinclus were recovered as polyphyletic.

A New Species of Tiger Pleco Panaqolus (Siluriformes: Loricariidae) from the Xingu Basin, Brazil.

Panaqolus tankei is described from the Xingu River, Brazil. The new species is diagnosed from P. albomaculatus, P. dentex, P. nix, P. nocturnus, and P. koko by its color pattern consisting of dark and light diagonal bars on the body and bands on the fins (vs. body and fins without bars or bands); from P. albivermis, P. maccus, and P. purusiensis by the width of the dark bars being more or less the same of the light bars (vs. dark bars at least two or three times wider than light bars) and from P. changae by the absence of vermiculation on the head (vs. vermiculation present on head). The new species differs from P. gnomus by the orientation of the bars from posterodorsal to anteroventral direction (vs. anterodorsal to posteroventral direction), and from P. claustellifer by the orientation of the bands in the dorsal fin that are not parallel to the margin (vs. parallel to the margin). The barcoding region (COI) was sequenced for the new species, sequences were deposited in GenBank and were compared with congeners from other drainages. With regard to the current construction of a hydroelectric power plant (a so-called mega dam) in the Xingu River, herewith we increase knowledge of the river Xingu's ichthyofauna and, thus improve the assessment of the impacts of that construction on the river.

A new species of Panaqolus (Siluriformes: Loricariidae) from the rio Madeira basin with remarkable intraspecific color variation

The rio Madeira is the largest white-water tributary of the Amazon, and is currently the river drainage with the highest fish species diversity in the world. A new species of Panaqolus was recognized from the middle Madeira and Mamoré rivers (Brazil) and from the Madre de Dios drainage (Peru) and it is described herein. This new species is readily distinguished from its congeners by the large number of white dots distributed all over the body and by its remarkable amplitude of color pattern variation, ranging from a pale, light brown, to dark brown and almost black background coloration. The new species closely resembles P. albomaculatus but has more and smaller dots on the body, a smaller orbital diameter (12.5-16.8% head length vs. 16.0-20.0%) and longer maxillary barbels (9.7-19.6% head length vs. 1.6-8.9%). The new species is the second of the genus Panaqolus described for a Brazilian location after nearly 80 years of the description of P. purusiensis.

O rio Madeira é o maior afluente de água branca do rio Amazonas e é atualmente o rio com o maior número de espécies do mundo. Uma nova espécie de Panaqolusfoi reconhecida do médio rio Madeira, do rio Mamoré (ambos no Brasil) e da bacia do Río Madre de Dios (Peru) e é descrita aqui. Esta nova espécie se distingue de suas congêneres pela grande quantidade de pontos brancos espalhados pelo corpo e grande variabilidade na sua coloração, variando de um fundo branco a marrom claro até marrom escuro e quase preto. A espécie se assemelha a P. albomaculatus da qual se distingue por ter mais manchas de menor tamanho no corpo, olhos menores (12,5-16,8% do comprimento da cabeça vs. 16,0-20,0%) e barbilhões maxilares mais compridos (9,7-19,6% comprimento da cabeça vs. 1,6-8,9%). A nova espécie é a segunda de Panaqolus descrita para uma localidade no Brasil, aproximadamente 80 anos após a descrição de P. purusiensis.

Redescription of Panaqolus purusiensis (LaMonte, 1935) (Siluriformes: Loricariidae) with identification key to the species of the genus

Despite Panaqolus purusiensis being described nearly 80 years ago, very little is known about it. The taxon was described based on a single specimen. Researching collection catalogues has revealed two more specimens that were caught together along with the holotype but had subsequently been deposited in different museums. Recent collections, including one from the type locality, have made more specimens available. Examination of this new material reveals that this species has three distinct color patterns that are size dependent. Specimens with standard length (SL) less than 30 mm show a coloration common among various species of Panaqolus consisting of regular bands on the body, fins and head. Specimens from 30-90 mm SL have a specific color pattern with thinner bands and those larger than 90 mm SL have a uniformly dark body with only the fins continuing to show bands. The most similar species are P. changae, P. gnomus, P. maccus, and P. nocturnus. The first three can easily be distinguished by their coloration and by body proportions. Specimens of P. nocturnus of more than 90 mm SL however are nearly indistinguishable from P. purusiensis of the same size, making identification difficult. Apesar de Panaqolus purusiensis ter sido descrita há quase 80 anos, sabe-se muito pouco sobre ela. O táxon foi descrito com base em um único exemplar. No entanto, pesquisas em catálogos de coleções ictiológicas revelaram mais dois exemplares que foram capturados junto com o holótipo, porém depositados em outros museus. Coletas recentes, incluindo a localidade-tipo, disponibilizaram mais espécimes. O exame deste material revelou que a espécie tem três padrões distintos de coloração dependendo do tamanho. Indivíduos com até 30 mm de comprimento padrão [CP] apresentam bandas regulares no corpo, nas nadadeiras e na cabeça, padrão de colorido comum em várias espécies de Panaqolus; indivíduos de 30-90 mm CP apresentam um padrão específico de coloração, com bandas claras mais finas; e acima de 90 mm CP o corpo é uniformemente escuro e somente as nadadeiras continuam expondo bandas. As espécies mais parecidas com P. purusiensis são P. changae, P. gnomus, P. maccus e P. nocturnus. As três primeiras podem facilmente ser distinguidas pelo padrão de coloração e pelas proporções do corpo, porém, exemplares de P. nocturnus com mais que 90 mm CP são muito parecidos com P. purusiensis do mesmo tamanho, dificultando a identificação.