Pesquisa | Portal de Pesquisa da BVS

1.

Integrating phylogenies into single-cell RNA sequencing analysis allows comparisons across species, genes, and cells.

Church, Samuel H; Mah, Jasmine L; Dunn, Casey W.

PLoS Biol ; 22(5): e3002633, 2024 May.

Artigo em Inglês | MEDLINE | ID: mdl-38787797

2.

The evolution of ovary-biased gene expression in Hawaiian Drosophila.

Church, Samuel H; Munro, Catriona; Dunn, Casey W; Extavour, Cassandra G.

PLoS Genet ; 19(1): e1010607, 2023 01.

Artigo em Inglês | MEDLINE | ID: mdl-36689550

3.

The evolution of siphonophore tentilla for specialized prey capture in the open ocean.

Damian-Serrano, Alejandro; Haddock, Steven H D; Dunn, Casey W.

Proc Natl Acad Sci U S A ; 118(8)2021 02 23.

Artigo em Inglês | MEDLINE | ID: mdl-33593896

4.

Evolution of Gene Expression across Species and Specialized Zooids in Siphonophora.

Munro, Catriona; Zapata, Felipe; Howison, Mark; Siebert, Stefan; Dunn, Casey W.

Mol Biol Evol ; 39(2)2022 02 03.

Artigo em Inglês | MEDLINE | ID: mdl-35134205

5.

Rooting the Animal Tree of Life.

Li, Yuanning; Shen, Xing-Xing; Evans, Benjamin; Dunn, Casey W; Rokas, Antonis.

Mol Biol Evol ; 38(10): 4322-4333, 2021 09 27.

Artigo em Inglês | MEDLINE | ID: mdl-34097041

6.

Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data.

Wang, Li-Gen; Lam, Tommy Tsan-Yuk; Xu, Shuangbin; Dai, Zehan; Zhou, Lang; Feng, Tingze; Guo, Pingfan; Dunn, Casey W; Jones, Bradley R; Bradley, Tyler; Zhu, Huachen; Guan, Yi; Jiang, Yong; Yu, Guangchuang.

Mol Biol Evol ; 37(2): 599-603, 2020 02 01.

Artigo em Inglês | MEDLINE | ID: mdl-31633786

7.

Pairwise comparisons across species are problematic when analyzing functional genomic data.

Dunn, Casey W; Zapata, Felipe; Munro, Catriona; Siebert, Stefan; Hejnol, Andreas.

Proc Natl Acad Sci U S A ; 115(3): E409-E417, 2018 01 16.

Artigo em Inglês | MEDLINE | ID: mdl-29301966

8.

Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution.

Munro, Catriona; Siebert, Stefan; Zapata, Felipe; Howison, Mark; Damian-Serrano, Alejandro; Church, Samuel H; Goetz, Freya E; Pugh, Philip R; Haddock, Steven H D; Dunn, Casey W.

Mol Phylogenet Evol ; 127: 823-833, 2018 10.

Artigo em Inglês | MEDLINE | ID: mdl-29940256

9.

Resolving the evolutionary relationships of molluscs with phylogenomic tools.

Smith, Stephen A; Wilson, Nerida G; Goetz, Freya E; Feehery, Caitlin; Andrade, Sónia C S; Rouse, Greg W; Giribet, Gonzalo; Dunn, Casey W.

Nature ; 480(7377): 364-7, 2011 Oct 26.

Artigo em Inglês | MEDLINE | ID: mdl-22031330

10.

Automation and Evaluation of the SOWH Test with SOWHAT.

Church, Samuel H; Ryan, Joseph F; Dunn, Casey W.

Syst Biol ; 64(6): 1048-58, 2015 Nov.

Artigo em Inglês | MEDLINE | ID: mdl-26231182

11.

Genomics: Acorn worms in a nutshell.

Dunn, Casey W.

Nature ; 527(7579): 448-9, 2015 Nov 26.

Artigo em Inglês | MEDLINE | ID: mdl-26580019

12.

A phylogenetic backbone for Bivalvia: an RNA-seq approach.

González, Vanessa L; Andrade, Sónia C S; Bieler, Rüdiger; Collins, Timothy M; Dunn, Casey W; Mikkelsen, Paula M; Taylor, John D; Giribet, Gonzalo.

Proc Biol Sci ; 282(1801): 20142332, 2015 Feb 22.

Artigo em Inglês | MEDLINE | ID: mdl-25589608

13.

The histology of Nanomia bijuga (Hydrozoa: Siphonophora).

Church, Samuel H; Siebert, Stefan; Bhattacharyya, Pathikrit; Dunn, Casey W.

J Exp Zool B Mol Dev Evol ; 324(5): 435-49, 2015 Jul.

Artigo em Inglês | MEDLINE | ID: mdl-26036693

14.

Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda.

Zapata, Felipe; Wilson, Nerida G; Howison, Mark; Andrade, Sónia C S; Jörger, Katharina M; Schrödl, Michael; Goetz, Freya E; Giribet, Gonzalo; Dunn, Casey W.

Proc Biol Sci ; 281(1794): 20141739, 2014 11 07.

Artigo em Inglês | MEDLINE | ID: mdl-25232139

15.

Toward a statistically explicit understanding of de novo sequence assembly.

Howison, Mark; Zapata, Felipe; Dunn, Casey W.

Bioinformatics ; 29(23): 2959-63, 2013 Dec 01.

Artigo em Inglês | MEDLINE | ID: mdl-24021385

16.

Broad phylogenomic sampling improves resolution of the animal tree of life.

Dunn, Casey W; Hejnol, Andreas; Matus, David Q; Pang, Kevin; Browne, William E; Smith, Stephen A; Seaver, Elaine; Rouse, Greg W; Obst, Matthias; Edgecombe, Gregory D; Sørensen, Martin V; Haddock, Steven H D; Schmidt-Rhaesa, Andreas; Okusu, Akiko; Kristensen, Reinhardt Møbjerg; Wheeler, Ward C; Martindale, Mark Q; Giribet, Gonzalo.

Nature ; 452(7188): 745-9, 2008 Apr 10.

Artigo em Inglês | MEDLINE | ID: mdl-18322464

17.

Cell type evolution reconstruction across species through cell phylogenies of single-cell RNA sequencing data.

Mah, Jasmine L; Dunn, Casey W.

Nat Ecol Evol ; 8(2): 325-338, 2024 Feb.

Artigo em Inglês | MEDLINE | ID: mdl-38182680

18.

Normalizing need not be the norm: count-based math for analyzing single-cell data.

Church, Samuel H; Mah, Jasmine L; Wagner, Günter; Dunn, Casey W.

Theory Biosci ; 143(1): 45-62, 2024 Feb.

Artigo em Inglês | MEDLINE | ID: mdl-37947999

19.

Giants among Cnidaria: Large Nuclear Genomes and Rearranged Mitochondrial Genomes in Siphonophores.

Ahuja, Namrata; Cao, Xuwen; Schultz, Darrin T; Picciani, Natasha; Lord, Arianna; Shao, Shengyuan; Jia, Kejue; Burdick, David R; Haddock, Steven H D; Li, Yuanning; Dunn, Casey W.

Genome Biol Evol ; 16(3)2024 Mar 02.

Artigo em Inglês | MEDLINE | ID: mdl-38502059

20.

Agalma: an automated phylogenomics workflow.

Dunn, Casey W; Howison, Mark; Zapata, Felipe.

BMC Bioinformatics ; 14: 330, 2013 Nov 19.

Artigo em Inglês | MEDLINE | ID: mdl-24252138

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