Biogeography of microbial communities in high-latitude ecosystems: Contrasting drivers for methanogens, methanotrophs and global prokaryotes.

Methane-cycling is becoming more important in high-latitude ecosystems as global warming makes permafrost organic carbon increasingly available. We explored 387 samples from three high-latitudes regions (Siberia, Alaska and Patagonia) focusing on mineral/organic soils (wetlands, peatlands, forest), lake/pond sediment and water. Physicochemical, climatic and geographic variables were integrated with 16S rDNA amplicon sequences to determine the structure of the overall microbial communities and of specific methanogenic and methanotrophic guilds. Physicochemistry (especially pH) explained the largest proportion of variation in guild composition, confirming species sorting (i.e., environmental filtering) as a key mechanism in microbial assembly. Geographic distance impacted more strongly beta diversity for (i) methanogens and methanotrophs than the overall prokaryotes and, (ii) the sediment habitat, suggesting that dispersal limitation contributed to shape the communities of methane-cycling microorganisms. Bioindicator taxa characterising different ecological niches (i.e., specific combinations of geographic, climatic and physicochemical variables) were identified, highlighting the importance of Methanoregula as generalist methanogens. Methylocystis and Methylocapsa were key methanotrophs in low pH niches while Methylobacter and Methylomonadaceae in neutral environments. This work gives insight into the present and projected distribution of methane-cycling microbes at high latitudes under climate change predictions, which is crucial for constraining their impact on greenhouse gas budgets.

Continuous Measurement of Diffusive and Ebullitive Fluxes of Methane in Aquatic Ecosystems by an Open Dynamic Chamber Method.

An open dynamic chamber for the continuous monitoring of diffusive and ebullitive fluxes of methane (CH4) in aquatic ecosystems was designed and developed. This method is based on a standard floating chamber in which a well-defined carrier gas flows. The concentration of CH4 is measured continuously at the outlet of the chamber, and the flux is determined from a mass balance equation. The method was carefully tested in a laboratory and was subsequently applied to two lakes, in Mexico, with contrasting trophic states. We show here that the method allows for the continuous quantification of CH4 diffusive flux higher than 25 × 10-6 g m-2 h-1, the determination of ebullitive flux, and the individual characterization of bubbles larger than 1.50-1.72 mm in diameter. The method was also applied to determine carbon dioxide emissions (CO2). In that case, the method was less sensitive but allowed for the characterization of diffusive fluxes higher than 10 mg CO2 m-2 h-1 and of bubbles larger than 5.3-8.4 mm in diameter. This high-throughput method can be adapted to any gas detector at low cost, making it a convenient tool to better constrain greenhouse gas emission from freshwater ecosystems.

In situ measurement of dissolved methane and carbon dioxide in freshwater ecosystems by off-axis integrated cavity output spectroscopy.

A novel low-cost method for the combined, real-time, and in situ determination of dissolved methane and carbon dioxide concentrations in freshwater ecosystems was designed and developed. This method is based on the continuous sampling of water from a freshwater ecosystem to a gas/liquid exchange membrane. Dissolved gas is transferred through the membrane to a continuous flow of high purity nitrogen, which is then measured by an off-axis integrated cavity output spectrometer (OA-ICOS). This method, called M-ICOS, was carefully tested in a laboratory and was subsequently applied to four lakes in Mexico and Alaska with contrasting climates, ecologies, and morphologies. The M-ICOS method allowed for the determination of dissolved methane and carbon dioxide concentrations with a frequency of 1 Hz and with a method detection limit of 2.76 × 10(-10) mol L(-1) for methane and 1.5 × 10(-7) mol L(-1) for carbon dioxide. These detection limits are below saturated concentrations with respect to the atmosphere and significantly lower than the minimum concentrations previously reported in lakes. The method is easily operable by a single person from a small boat, and the small size of the suction probe allows the determination of dissolved gases with a minimized impact on shallow freshwater ecosystems.

A combined microbial and biogeochemical dataset from high-latitude ecosystems with respect to methane cycle.

High latitudes are experiencing intense ecosystem changes with climate warming. The underlying methane (CH4) cycling dynamics remain unresolved, despite its crucial climatic feedback. Atmospheric CH4 emissions are heterogeneous, resulting from local geochemical drivers, global climatic factors, and microbial production/consumption balance. Holistic studies are mandatory to capture CH4 cycling complexity. Here, we report a large set of integrated microbial and biogeochemical data from 387 samples, using a concerted sampling strategy and experimental protocols. The study followed international standards to ensure inter-comparisons of data amongst three high-latitude regions: Alaska, Siberia, and Patagonia. The dataset encompasses different representative environmental features (e.g. lake, wetland, tundra, forest soil) of these high-latitude sites and their respective heterogeneity (e.g. characteristic microtopographic patterns). The data included physicochemical parameters, greenhouse gas concentrations and emissions, organic matter characterization, trace elements and nutrients, isotopes, microbial quantification and composition. This dataset addresses the need for a robust physicochemical framework to conduct and contextualize future research on the interactions between climate change, biogeochemical cycles and microbial communities at high-latitudes.

Sub-oxycline methane oxidation can fully uptake CH4 produced in sediments: case study of a lake in Siberia.

It is commonly assumed that methane (CH4) released by lakes into the atmosphere is mainly produced in anoxic sediment and transported by diffusion or ebullition through the water column to the surface of the lake. In contrast to that prevailing idea, it has been gradually established that the epilimnetic CH4 does not originate exclusively from sediments but is also locally produced or laterally transported from the littoral zone. Therefore, CH4 cycling in the epilimnion and the hypolimnion might not be as closely linked as previously thought. We utilized a high-resolution method used to determine dissolved CH4 concentration to analyze a Siberian lake in which epilimnetic and hypolimnetic CH4 cycles were fully segregated by a section of the water column where CH4 was not detected. This layer, with no detected CH4, was well below the oxycline and the photic zone and thus assumed to be anaerobic. However, on the basis of a diffusion-reaction model, molecular biology, and stable isotope analyses, we determined that this layer takes up all the CH4 produced in the sediments and the deepest section of the hypolimnion. We concluded that there was no CH4 exchange between the hypolimnion (dominated by methanotrophy and methanogenesis) and the epilimnion (dominated by methane lateral transport and/or oxic production), resulting in a vertically segregated lake internal CH4 cycle.

Methane dynamics in the subsaline ponds of the Chihuahuan Desert: A first assessment.

The Cuatro Cienegas Basin (CCB) in the Chihuahuan desert is characterized by the presence of over 500 ponds located in an endorheic basin. These ponds are subsaline ecosystems characterized by a low productivity and a particularly high sulfate concentration, comparable to marine environments. This study focused on assessing the main physicochemical parameters in these ponds along with the characterization of the CH4 dynamics through the determination of fluxes, dissolved CH4 concentrations, and net methanotrophic and methanogenic activity. Despite a sulfate concentration ranging from 1.06 to 4.73 g L-1, the studied ponds showed moderate but clear CH4 production and emission, which suggests that methanogenesis is not completely outcompeted by sulfate reduction. CH4 fluxes ranged from 0.12 to 0.98 mg m-2 d-1, which falls within the higher range of marine emissions and within the lower range reported for coastal saline lagoons and saline ponds. During summer, significant CH4 production in the oxic water column was observed. In addition to CH4, CO2 fluxes were determined at levels from 0.2 to 53 g m-2 d-1, which is within the range recorded for saline lakes in other parts of the world. Our results provide additional evidence that subsaline/saline aquatic ecosystems play an important role in the emission of greenhouse gases to the atmosphere.

Initial report on methane and carbon dioxide emission dynamics from sub-Antarctic freshwater ecosystems: A seasonal study of a lake and a reservoir.

The sub-Antarctic Magellanic ecoregion is a part of the world where ecosystems have been understudied and where the CH4 cycling and emissions in lakes has not ever been reported. To fill that knowledge gap, a lake and a reservoir located at 53°S were selected and studied during three campaigns equally distributed over one year. Among the parameters measured were CH4 and CO2 emissions, as well their dissolved concentrations in the water column, which were determined with high spatial resolution. No ebullition was observed and the CH4 flux ranged from 0.0094 to 4.47mmolm-2d-1 while the CO2 flux ranged from -22.95 to 35.68mmolm-2d-1. Dissolved CH4 concentrations varied over more than four orders of magnitude (0.025-128.75µmolL-1), and the dissolved carbon dioxide ranged from below the detection limit of our method (i.e., 0.15µmolL-1) to 379.09µmolL-1. The high spatial resolution of the methods used enabled the construction of bathymetric maps, surface contour maps of CH4 and CO2 fluxes, and transect contour maps of dissolved oxygen, temperature, and dissolved greenhouse gases. Overall, both lakes were net greenhouse gas producers and were not significantly different from temperate lakes located at a similar northern latitudes (53°N), except that ebullition was never observed in the studied sub-Antarctic lakes.