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1.
Mol Phylogenet Evol ; 186: 107854, 2023 09.
Artigo em Inglês | MEDLINE | ID: mdl-37302675

RESUMO

Species C rotaviruses (RVC) are the second most common rotavirus species known to cause gastroenteritis in humans and pigs and with occurrence documented in cattle, dogs, ferrets, and sloth bears. Despite the host-specific nature of RVC genotypes, cross-species transmission, reassortment, and recombination events are also documented. In the present study, we inferred the evolutionary history of globally circulating RVC strains, including time scale stasis, the most probable ancestral country, and the most probable source host using Bayesian methods implemented in BEAST v.1.8.4. The human-derived RVC strains were majorly monophyletic and further grouped into two lineages. The RVC strains derived from pigs were monophyletic for the VP1 and the remaining genes were classified into 2 to 4 groups based on the high posterior support. The root mean age for all the genes indicated the circulation of RVC for over 800 years. Overall, the time to Most Recent Common Ancestor of human RVC strains dated back to the beginning of the 20th century. The VP7 and NSP2 genes had the lowest rates of evolution compared to other genes. The majority of the genes of RVC showed their origin in Japan except for VP7 and VP4 genes in South Korea. The phylogeographic analysis with the country as a trait showed the role of Japan, China, and India in the dispersion of the virus. In the current study, significant transmission links between different hosts were analyzed for the first time using the host as a trait. Significant transmission links between pigs and other animal species as well as humans indicate possible transmission from the pig as a source host and suggest monitoring of proximity with animals.


Assuntos
Infecções por Rotavirus , Rotavirus , Humanos , Animais , Bovinos , Cães , Suínos , Rotavirus/genética , Animais Domésticos , Infecções por Rotavirus/veterinária , Infecções por Rotavirus/epidemiologia , Teorema de Bayes , Filogenia , Furões , Genótipo
2.
Arch Virol ; 168(6): 160, 2023 May 12.
Artigo em Inglês | MEDLINE | ID: mdl-37169986

RESUMO

In India, studies on the epidemiological and genetic characteristics of enteric viruses in adults with acute gastroenteritis (AGE) are lacking. In this study, fecal samples (n = 110) from adults with acute gastroenteritis in Pune, Western India, were tested for six enteric viruses, and the prevalence of these viruses was as follows: rotavirus A (RVA), 38.5%; enterovirus (EV), 23.1%; astrovirus (AstV), 23.1%; adenovirus (AdV), 7.7%; human bocavirus (HBoV), 7.7%; norovirus (NoV), 0%. Circulation of the RVA G1P[8], G3P[8], G9P[4], CVA-10, echovirus E13, EVC-116, AstV-5, AstV-2, HBoV-1, and AdVC-2 types was observed. When compared to the RotaTeq, Rotarix, and RotaVac vaccine strains, antigenic changes were found in the A, B, C, and F regions of the RVA strains. The circulation of genetically diverse, unusual enteric virus strains, reported here for the first time in adults with acute gastroenteritis, warrants multi-center hospital-based surveillance studies across the country.


Assuntos
Astroviridae , Infecções por Enterovirus , Enterovirus , Gastroenterite , Bocavirus Humano , Infecções por Rotavirus , Rotavirus , Vírus , Adulto , Humanos , Lactente , Índia/epidemiologia , Gastroenterite/epidemiologia , Rotavirus/genética , Vírus/genética , Infecções por Enterovirus/epidemiologia , Antígenos Virais/genética , Fezes , Genótipo , Filogenia
3.
J Med Virol ; 94(6): 2613-2623, 2022 06.
Artigo em Inglês | MEDLINE | ID: mdl-34811775

RESUMO

Rotaviruses (RVs) are the major causative agents of acute gastroenteritis in children, but in neonates, RV infections are generally nosocomial in origin and mostly asymptomatic. However, there have been infrequent reports of nosocomial outbreaks of clinical disease in this population. In this study, we describe uncommon RV genotype; G12P[11] associated with an outbreak of acute gastroenteritis in the neonatal ward and neonatal intensive care unit (NICU) in New Delhi, North India. Full-genome analyses of the pathogenic G12P[11] strain was carried out to map the genotype constellation and further to explore the variations in the antigenic epitopes on the immunodominant VP7 and VP4 proteins, the amino acid sequences were compared with neonatal strains; ROTAVAC® (G9P[11]) and asymptomatic G12P[11] and also other G/P-type matched strains. The study revealed G12-P[11]-I1-R1-C1-M1-A1-N1-T1-E1-H1 human Wa-like genotype constellation and highlights evidence of gene reassortment. No significant differences were observed in the sequences of structural (except VP3) and nonstructural encoding genes of G12P[11] strains recovered from symptomatic and asymptomatic neonates. Presence of additional N-linked glycosylation site was noted in the G12 strains, as a consequence of a change from Asp→Asn at amino acid position 238. Interestingly, only two and four amino acids substitution within the 7-1a and 8-1 antigenic epitope were observed, respectively, compared with asymptomatic G12P[11] strain. The study emphasizes the importance of close monitoring of RV outbreaks in neonates for early alarming of novel strain.


Assuntos
Infecção Hospitalar , Gastroenterite , Infecções por Rotavirus , Rotavirus , Criança , Infecção Hospitalar/epidemiologia , Diarreia/epidemiologia , Surtos de Doenças , Genoma Viral , Genótipo , Humanos , Índia/epidemiologia , Recém-Nascido , Filogenia , Rotavirus/genética
4.
Arch Virol ; 167(12): 2665-2675, 2022 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-36169718

RESUMO

Asymptomatic infection with rotavirus C (RVC) was observed in pigs in India, with a detection rate of 20%. Sequencing of the VP6, VP7, and NSP4 genes of RVC strains identified the genotypes I7/I10, G1, and E5, respectively. Full genome sequencing of one of these strains revealed that the genotypes of the VP4, VP1, VP2, VP3, NSP1, NSP2, NSP3, and NSP5 genes were P1, R1, C1, M3, A1, N5, T5, and H1, respectively. The detection of porcine RVC strains at two different locations in India at different time points strongly suggests that they are circulating continuously in the pig population through asymptomatic infections.


Assuntos
Infecções por Rotavirus , Rotavirus , Animais , Suínos , Filogenia , Genótipo , Infecções por Rotavirus/epidemiologia , Infecções por Rotavirus/veterinária , Rotavirus/genética , Genoma Viral
5.
J Med Virol ; 93(6): 3572-3580, 2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-32833231

RESUMO

Hand, Foot, and Mouth disease (HFMD) is a mild exanthematous and febrile disease occurs in children aged ≤10 years old. The present study highlights clinical, epidemiological characteristics, distribution of enterovirus (EV) types, and sub genotypes in HFMD cases reported during 2017 to 2018 in Western India. A total of 93 clinical samples collected from 68 HFMD cases were included. The presence of EV-RNA was determined by 5'UTR based nested reverse transcription polymerase chain reaction followed by molecular typing, sub genotyping by VP1/2A junction or VP1, full VP1 gene amplification, and phylogenetic analysis. The study reports 80.64% (75/93) EV positivity and 94.66% (71/75) typing rate, with a predominant circulation of CVA16 and CVA6 strains. Sequence analysis revealed the presence of coxsackievirus (CV)A16 (57.7%), CVA6 (40.8%), and Echo1 (1.4%) strains. EV infections were predominantly observed in children aged 1 to 3 years old (43.9%). Although cases were reported throughout the year, peaked in July (15.8%) and August (24.6%) months and persisted till September (19.3%). All the CVA16 and CVA6 positive strains were genotyped using full VP1 gene amplification. All CVA16 Indian strains (n = 41) were clustered with rarely reported B1c sub genotype and CVA6 strains (n = 29) with E2 sub-lineage. The study highlights the genetic characteristics of circulating CVA16, CVA6, and Echo1 strains in HFMD cases from Western India. The emergence of CVA16 B1c genotype and sub-lineage E2 of CVA6 strains and their constant circulation further demands systemic surveillance studies on HFMD from different parts of India to facilitate the rapid diagnosis of CVA16 and CVA6 strains using the molecular and serological based approach and for intervention strategies.


Assuntos
Enterovirus/classificação , Enterovirus/genética , Genótipo , Doença de Mão, Pé e Boca/epidemiologia , Regiões 5' não Traduzidas , Criança , Pré-Escolar , Doença de Mão, Pé e Boca/virologia , Humanos , Índia/epidemiologia , Lactente , Recém-Nascido , Tipagem Molecular , Filogenia , RNA Viral/genética
6.
J Med Virol ; 93(6): 3590-3600, 2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-32997382

RESUMO

Among enteric viruses, rotavirus A (RVA), norovirus (NoV), adenovirus, and astrovirus (AstV) are the major etiological agents associated in acute gastroenteritis. The present study highlights, clinical, epidemiological, and molecular aspects with respect to RVA, NoV, enterovirus (EV), and human parechovirus (HPeVs) in sporadic cases (n = 305) of acute gastroenteritis, Pune (Maharashtra), Western India. Detection of RVA was carried out by enzyme-linked immunosorbent assay, NoV, EV, and HPeVs by reverse transcription PCR. Prevalence of 36.06%, 20.32%, 14.09%, 3.93%, respectively was observed for RVA, EV, HPeVs, and NoV along with coinfections. Infections occurred in children less than 2 years old, with peak infections within 12 months age. The disease severity in RV infections was found high (70.90%) with severe disease, followed by EV (62.9%), NoV (58.33%), and HPeV (44.58%). Predominant strains of RV G1P[8], G2P[4] types with unusual G9P[4], NoV Genogroup II of genotype 4 strains and multiple EV types with EV-B species, E14 and E17 and two novel EV-75, EV-107 types were detected. Circulation of heterogeneous HPeV genotypes (HPeV1-5, 7, 8, 13, 14, 16) with predominance of HPeV-1 was noticed. Changing trends in circulation of a rare HPeV-2 genotype, with emerging and reemerging strains was noted. The study highlights association of RVA, NoV, EV, and HPeV and their mono-infections, genotype distribution, and changing trends in acute gastroenteritis, and added more knowledge on rota and nonrota enteric viruses in acute gastroenteritis. More such studies in rota vaccinated era are required across the country, as Indian rotavirus vaccine has been implemented under the National Immunization program.


Assuntos
Gastroenterite/epidemiologia , Genótipo , Filogenia , Infecções por Picornaviridae/epidemiologia , Picornaviridae/classificação , Picornaviridae/genética , Antígenos Virais/genética , Proteínas do Capsídeo/genética , Pré-Escolar , Fezes/virologia , Gastroenterite/virologia , Variação Genética , Humanos , Índia/epidemiologia , Lactente , Recém-Nascido , Picornaviridae/patogenicidade , Infecções por Picornaviridae/virologia , Estudos Retrospectivos , Análise de Sequência de DNA
7.
J Med Virol ; 93(8): 4805-4816, 2021 08.
Artigo em Inglês | MEDLINE | ID: mdl-33990988

RESUMO

Four gastroenteritis viruses were responsible for 54% of the acute gastroenteritis (AGE) cases in children hospitalized between May 2017 and December 2019 in Pune city of Maharashtra state, Western India. The majority (79%) of the children were <2 years of age. The prevalence of Rotavirus A (RVA) was 30.5% followed by 14.3% for norovirus, 8.4% for adenovirus, and 5.5% for astrovirus. The severity of the disease was highest in patients with coinfections compared with the patients with a single infection or negative for all (p = 0.024). Genotyping analysis showed that the majority of the RVA-positive samples (66%) could be typed as G3P[8], 63.6% of the norovirus as GII.4 Sydney [P16], 44% of the adenovirus as type 41%, and 56.2% of the astrovirus as astrovirus type 1. The almost equivalent prevalence of rotavirus and nonrotaviruses and acute gastroenteritis (AGE) cases without known etiology in around 46% of the cases was noted in the present study. Our data highlight that after the recent inclusion of rotavirus vaccines as a part of the National Immunization schedule in India, conducting extensive AGE surveillance in children should include nonrotaviruses such as norovirus.


Assuntos
Fezes/virologia , Gastroenterite/epidemiologia , Gastroenterite/virologia , Variação Genética , Vírus/genética , Doença Aguda/epidemiologia , Pré-Escolar , Diarreia/virologia , Feminino , Genótipo , Humanos , Índia/epidemiologia , Lactente , Recém-Nascido , Masculino , Prevalência , Índice de Gravidade de Doença , Vírus/classificação , Vírus/isolamento & purificação , Vírus/patogenicidade
8.
BMC Infect Dis ; 20(1): 740, 2020 Oct 09.
Artigo em Inglês | MEDLINE | ID: mdl-33036575

RESUMO

BACKGROUND: From 2016, the Government of India introduced the oral rotavirus vaccine into the national immunization schedule. Currently, two indigenously developed vaccines (ROTAVAC, Bharat Biotech; ROTASIIL, Serum Institute of India) are included in the Indian immunization program. We report the rotavirus disease burden and the diversity of rotavirus genotypes from 2005 to 2016 in a multi-centric surveillance study before the introduction of vaccines. METHODS: A total of 29,561 stool samples collected from 2005 to 2016 (7 sites during 2005-2009, 3 sites from 2009 to 2012, and 28 sites during 2012-2016) were included in the analysis. Stools were tested for rotavirus antigen using enzyme immunoassay (EIA). Genotyping was performed on 65.8% of the EIA positive samples using reverse transcription- polymerase chain reaction (RT-PCR) to identify the G (VP7) and P (VP4) types. Multinomial logistic regression was used to quantify the odds of detecting genotypes across the surveillance period and in particular age groups. RESULTS: Of the 29,561 samples tested, 10,959 (37.1%) were positive for rotavirus. There was a peak in rotavirus positivity during December to February across all sites. Of the 7215 genotyped samples, G1P[8] (38.7%) was the most common, followed by G2P[4] (12.3%), G9P[4] (5.8%), G12P[6] (4.2%), G9P[8] (4%), and G12P[8] (2.4%). Globally, G9P[4] and G12P[6] are less common genotypes, although these genotypes have been reported from India and few other countries. There was a variation in the geographic and temporal distribution of genotypes, and the emergence or re-emergence of new genotypes such as G3P[8] was seen. Over the surveillance period, there was a decline in the proportion of G2P[4], and an increase in the proportion of G9P[4]. A higher proportion of mixed and partially typed/untyped samples was also seen more in the age group 0-11 months. CONCLUSIONS: This 11 years surveillance highlights the high burden of severe rotavirus gastroenteritis in Indian children < 5 years of age before inclusion of rotavirus vaccines in the national programme. Regional variations in rotavirus epidemiology were seen, including the emergence of G3P[8] in the latter part of the surveillance. Having pre-introduction data is important to track changing epidemiology of rotaviruses, particularly following vaccine introduction.


Assuntos
Gastroenterite/epidemiologia , Genótipo , Hospitalização , Infecções por Rotavirus/epidemiologia , Rotavirus/genética , Doença Aguda , Antígenos Virais/imunologia , Pré-Escolar , Fezes/virologia , Feminino , Gastroenterite/prevenção & controle , Gastroenterite/virologia , Técnicas de Genotipagem , Humanos , Programas de Imunização , Esquemas de Imunização , Técnicas Imunoenzimáticas , Índia/epidemiologia , Lactente , Recém-Nascido , Masculino , Prevalência , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Rotavirus/imunologia , Infecções por Rotavirus/prevenção & controle , Infecções por Rotavirus/virologia , Vacinas contra Rotavirus/imunologia
9.
J Gen Virol ; 100(12): 1605-1630, 2019 12.
Artigo em Inglês | MEDLINE | ID: mdl-31553304

RESUMO

Species A rotaviruses (RVAs) are genetically diverse pathogens. These are the most evolutionarily adaptable organisms, with a multitude of mechanisms for evolutionary change. To date, full-genome classification has been proved to be an excellent tool for studying the evolution of unusual rotavirus strains. As limited data are available from Pune (Maharashtra), western India, the current study was undertaken with the aim of understanding the genetic diversity in three (G1P[6], G9P[4] and G9P[4]) unusual RVA strains circulating in Pune, India during 2013-2015. Full-genome analysis of these strains classified them as G1-P[6]-I1-R1-C1-M1-A1-N1-T1-E1-H1, G9-P[4]-I2-R2-C2-[M1-M2_R]-[A1-A2_R]-N2-T2-E6-H2 and G9-[P4-P6_R]-I1-R1-C1-M1-A1-N1-T1-E1-H1. Sequencing and phylogenetic analysis of the structural and non-structural genes of these unusual RVA strains showed nucleotide/amino acid identities of 82.3-98.5 %/77.3-99.8 % and 86.6-97.6 %/89.6-97.8 % between the strains of the study. Evidence of recombination events was found within the genes encoding VP3, VP4 and NSP1, which showed a combination of genetic information for genogroup 1 [M1/P[6]/A1] and genogroup 2 [M2/P[4]/A2] strains. This study will facilitate future investigations into the molecular pathogenesis of such RVAs as the exchange of whole or partial genetic material between rotaviruses through recombination contributes directly to their diversification, adaptation and evolution.


Assuntos
Gastroenterite/epidemiologia , Gastroenterite/virologia , Genes Virais , Infecções por Rotavirus/epidemiologia , Infecções por Rotavirus/virologia , Rotavirus/classificação , Rotavirus/genética , Proteínas do Capsídeo/genética , Pré-Escolar , Fezes/virologia , Gastroenterite/história , Genoma Viral , História do Século XXI , Humanos , Índia/epidemiologia , Lactente , Filogenia , Vigilância em Saúde Pública , Vírus Reordenados/genética , Recombinação Genética , Rotavirus/isolamento & purificação , Infecções por Rotavirus/história , Proteínas não Estruturais Virais/genética
10.
J Gen Virol ; 100(7): 1055-1072, 2019 07.
Artigo em Inglês | MEDLINE | ID: mdl-31166164

RESUMO

The number of whole-genome sequences of human rotavirus C (RVC) strains available in public databases is recently increasing. Thus far from India only a single whole genome of human RVC of a sporadic case was available. In this study, nearly full-length genome sequencing and phylogenetic analyses of three RVC strains isolated from three different gastroenteritis outbreaks during 2010-2014 in Western India was carried out. Further, an intra-genotypic lineage classification system for human RVCs based on the nucleotide divergence cut-off values was proposed by using the algorithm of the Rotavirus Classification Working Group. Two lineages could be defined for all the genes except the VP7 gene and the M3 VP3 genotype. Provisional classification of the lineages indicated the absence of reassortment events in the genomic constellation of Indian strains, contrary to earlier reports. The comparatively higher variability of the NSP1, NSP3, NSP5 and M2 VP3 genotype, emphasizes their utility in lineage classification.


Assuntos
Gastroenterite/virologia , Genoma Viral , Infecções por Rotavirus/virologia , Rotavirus/classificação , Rotavirus/genética , Animais , Proteínas do Capsídeo/genética , Surtos de Doenças , Gastroenterite/epidemiologia , Genótipo , Humanos , Índia/epidemiologia , Filogenia , Rotavirus/isolamento & purificação , Infecções por Rotavirus/epidemiologia , Proteínas não Estruturais Virais/genética
11.
J Med Virol ; 91(10): 1887-1890, 2019 10.
Artigo em Inglês | MEDLINE | ID: mdl-31180141

RESUMO

Human bocavirus (HBoV) has been frequently associated with acute gastroenteritis. A 5-year retrospective study was undertaken to understand the circulation pattern and genotype distribution of HBoV in acute gastroenteritis cases in Pune, Western India. A total of 985 stool samples collected from sporadic acute gastroenteritis cases and asymptomatic controls (2007-2011) from children (≤5 years) were examined for the presence of HBoV. HBoV1 was detected throughout the study period while HBoV2 during 2007-2010, HBoV3 in 2007-2009 and in 2011, and HBoV4 in 2009 and 2011. Interestingly, HBoV2 was observed to be predominant in 2007 while HBoV1 and HBoV2 were detected at an equal frequency in the year 2008. HBoV1 was predominant from 2009 onwards. The present study highlights the changing pattern of genotypic circulation, emergence, and re-emergence of HBoV variants in acute gastroenteritis cases over a 5-year study period in Western India. The severity of gastroenteritis is reported to vary with HBoV genotypes. Thus, the present study emphasizes the need for routine HBoV surveillance in acute gastroenteritis cases from other parts of the country. This data will be valuable in the current scenario because implementation of rotavirus vaccination has led to the rising of other enteric viruses associated with the disease.


Assuntos
Gastroenterite/epidemiologia , Gastroenterite/virologia , Bocavirus Humano/genética , Infecções por Parvoviridae/epidemiologia , Infecções por Parvoviridae/virologia , Genótipo , Humanos , Índia/epidemiologia , Filogenia , Estudos Retrospectivos
12.
J Med Virol ; 91(10): 1877-1881, 2019 10.
Artigo em Inglês | MEDLINE | ID: mdl-31276221

RESUMO

An acute gastroenteritis outbreak at Devli Karad village, Maharashtra, India with an attack rate of 22.6% affected mainly adolescent and adult population. The viral investigations conducted on fecal specimens of patients hospitalized indicated the presence of rotavirus B (RVB) using RNA polyacrylamide gel electrophoresis and reverse transcription polymerase chain reaction. The samples collected from the source of drinking water also showed the presence of the only RVB. Absence of other viral agents and identification of RVB of genotype G2 as the etiological agent of the acute gastroenteritis outbreak highlights, the necessity of monitoring RVB, the viral agent known for its large outbreak potential.


Assuntos
Água Potável/virologia , Gastroenterite/virologia , Infecções por Rotavirus/virologia , Rotavirus/genética , Rotavirus/isolamento & purificação , Adolescente , Adulto , Antígenos Virais/genética , Proteínas do Capsídeo/genética , Criança , Pré-Escolar , Surtos de Doenças , Fezes/virologia , Feminino , Gastroenterite/epidemiologia , Humanos , Índia/epidemiologia , Lactente , Masculino , Pessoa de Meia-Idade , Filogenia , Infecções por Rotavirus/epidemiologia , Microbiologia da Água , Adulto Jovem
13.
J Med Virol ; 89(1): 17-23, 2017 01.
Artigo em Inglês | MEDLINE | ID: mdl-27272684

RESUMO

Although acute gastroenteritis is a major public health problem worldwide, ∼40% of the cases remain undiagnosed for any etiological agent. Human Bocavirus (HBoV) has been detected frequently in feces of diarrhoeic children suggesting its possible etiological involvement in the disease. HBoV has not been reported in association with acute gastroenteritis from India. Fecal samples (n = 418) collected from children (age ≤5 years) hospitalized with acute gastroenteritis, between January 2009 and December 2011, from three local hospitals were examined for presence of HBoV using PCR targeting the partial VP1/VP2 capsid region (∼575 bp) followed by phylogenetic analysis. HBoV was detected in 24/418 (5.7%) cases. Co-infection was observed in 5/24 (21%) cases. HBoV infections occurred in children ≤12 months of age. Peak HBoV activity was observed in monsoon and post monsoon season. All four HBoV genotypes were detected in the study region. Major clinical symptoms of HBoV mono infections included diarrhoea (100%), fever (90%), dehydration (74%), and vomiting (58%). Dehydration was observed in all of the HBoV2-4 cases and in 50% of the HBoV1 cases. Clinical severity varied with genotype (HBoV2 > HBoV1 > HBoV3 > HBoV4). HBoV2 cases recorded severe and very severe infections. The study illustrates prevalence and vast genetic diversity of HBoVs in acute gastroenteritis. It highlights the clinical features of HBoV1-4 infections and sheds light on clinical impact of HBoV genotypes in gastroenteritis. J. Med. Virol. 89:17-23, 2017. © 2016 Wiley Periodicals, Inc.


Assuntos
Gastroenterite/epidemiologia , Gastroenterite/patologia , Genótipo , Bocavirus Humano/classificação , Bocavirus Humano/genética , Infecções por Parvoviridae/epidemiologia , Infecções por Parvoviridae/patologia , Fatores Etários , Proteínas do Capsídeo/genética , Pré-Escolar , Coinfecção/epidemiologia , Coinfecção/patologia , Coinfecção/virologia , Fezes/virologia , Feminino , Gastroenterite/virologia , Hospitalização , Bocavirus Humano/isolamento & purificação , Humanos , Índia/epidemiologia , Lactente , Recém-Nascido , Masculino , Epidemiologia Molecular , Infecções por Parvoviridae/virologia , Filogenia , Reação em Cadeia da Polimerase , Prevalência , Estudos Retrospectivos , Estações do Ano , Índice de Gravidade de Doença
14.
J Med Virol ; 89(8): 1354-1363, 2017 08.
Artigo em Inglês | MEDLINE | ID: mdl-28240365

RESUMO

Group A rotaviruses (RVA) are the major enteric etiological agents of severe acute gastroenteritis among children globally. As G9 RVA now represents as one of the major human RVA genotypes, studies on full genome of this particular genotype are being carried out worldwide. So far, no such studies on G9P[8] RVAs have been reported from Pune, western part of India. Keeping in view of this, the study was undertaken to understand the degree of genetic diversity of the commonly circulating G9P[8] RVA strains. Rotavirus surveillance studies carried out earlier during the years 2009-2011 showed increase in the prevalence of G9P[8] RVAs. Representative G9P[8] RVA strains from the years 2009, 2010, and 2011 were selected for the study. In general, all the G9 RVA strains showed clustering in the globally circulating sublineage of the VP7 gene and showed nucleotide/amino acid identities of 96.8-99.7%/96.9-99.8% with global G9 RV strains. Full genome analysis, of all three RVAs in this study indicated Wa-like genotype constellation G9-P[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1. Within the strains nucleotide/amino acid divergence of 0.1-3.4%/0.0-4.1% was noted in all the RVA structural and non-structural genes. In conclusion, the present study highlights intra-genotypic variations throughout the RVA genome. The study further emphasizes the need for surveillance and analysis of the whole genomic constellation of the commonly circulating RVA strains of other regions in the country for understanding to a greater degree of the impact of rotavirus vaccination recently introduced in India.


Assuntos
Gastroenterite/virologia , Variação Genética , Infecções por Rotavirus/virologia , Rotavirus/classificação , Rotavirus/genética , Análise por Conglomerados , Genoma Viral , Genótipo , Humanos , Índia , Filogenia , Rotavirus/isolamento & purificação , Análise de Sequência de DNA , Homologia de Sequência
15.
J Med Virol ; 89(12): 2244-2248, 2017 12.
Artigo em Inglês | MEDLINE | ID: mdl-28710858

RESUMO

Acute gastroenteritis outbreak occurred at Pargaon, Maharashtra, India in 1789 cases with an attack rate of 32.5% between November to December 2015. The stool specimens (n = 32) were investigated for different enteric viral agents using conventional methods. Transmission electron microscopy and RNA polyacrylamide gel electrophoresis respectively identified morphologically distinct rotavirus particles in 28% and RNA migration pattern of Group B Rotavirus (GBR) in 72% of the specimens. Reverse transcription polymerase chain reaction and nucleotide sequencing confirmed presence of GBR in 97% of the samples analyzed. The predominance of GBR infections and absence or insignificant presence of other agents confirmed GBR as an etiological agent of the gastroenteritis outbreak occurred in Maharashtra, India.


Assuntos
Surtos de Doenças , Gastroenterite/etiologia , Gastroenterite/virologia , Infecções por Rotavirus/epidemiologia , Rotavirus/isolamento & purificação , Doença Aguda/epidemiologia , Adolescente , Adulto , Criança , Pré-Escolar , Diarreia/virologia , Eletroforese em Gel de Poliacrilamida , Fezes/virologia , Feminino , Gastroenterite/epidemiologia , Sequenciamento de Nucleotídeos em Larga Escala , Humanos , Índia/epidemiologia , Masculino , Microscopia Eletrônica de Transmissão , Pessoa de Meia-Idade , RNA Viral/análise , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Rotavirus/genética , Rotavirus/ultraestrutura , Infecções por Rotavirus/virologia , Adulto Jovem
16.
J Med Virol ; 88(12): 2100-2105, 2016 12.
Artigo em Inglês | MEDLINE | ID: mdl-27152842

RESUMO

Epidemic keratoconjunctivitis (EKC) is a highly contagious infectious disease of the ocular surface and is caused mainly due to adenoviruses species D, B, and E. The present study was carried out to identify and characterize the viral etiological agents associated with the keratoconjunctivitis cases reported from Pune (Maharashtra), Western India between November-December 2013 and January, October-November 2014. Conjunctival swab specimens (n = 23) obtained from keratoconjunctivitis patients were subjected to detection of Adenovirus (AdV) and Enterovirus (EV) by PCR/RT-PCR using hexon and 5' NCR gene specific primers, respectively. Molecular typing of AdV and EV positive specimens was carried out by amplifying penton, fiber, and VP1 genes, respectively followed by sequencing and phylogenetic analysis. In this study, human adenovirus (HAdV) was identified as an etiological agent. None of the clinical specimens were found positive for enterovirus. AdV positivity in keratoconjunctivitis cases was found to be 60.9% (14/23). Fourteen of the HAdV positive strains, all of them were amplified by hexon gene, nine strains by fiber gene, and all 14 strains by penton gene specific primers. Sequencing of all HAdV positive samples revealed the presence of HAdV-8, HAdV-37, HAdV-3, and HAdV-4. All Indian strains showed highest nucleotide identity with the reference strains reported worldwide. The study revealed the circulation of HAdV-8 (78.6%) as predominant AdV strain followed by HAdV-37, HAdV-3, and HAdV-4 (7.2%) identified in the epidemic keratoconjunctivitis. Multiple types of AdVs in EKC reported for the first time in Western India. J. Med. Virol. 88:2100-2105, 2016. © 2016 Wiley Periodicals, Inc.


Assuntos
Infecções por Adenovirus Humanos/epidemiologia , Adenovírus Humanos/genética , Adenovírus Humanos/isolamento & purificação , Conjuntivite Viral/epidemiologia , Epidemias , Ceratoconjuntivite/epidemiologia , Ceratoconjuntivite/virologia , Infecções por Adenovirus Humanos/virologia , Adenovírus Humanos/classificação , Adolescente , Adulto , Proteínas do Capsídeo/genética , Criança , Pré-Escolar , DNA Viral/genética , Enterovirus/genética , Feminino , Genoma Viral , Humanos , Índia/epidemiologia , Lactente , Ceratoconjuntivite/etiologia , Masculino , Pessoa de Meia-Idade , Tipagem Molecular , Filogenia , Reação em Cadeia da Polimerase , Estudos Retrospectivos , Análise de Sequência de DNA , Adulto Jovem
18.
Indian J Med Microbiol ; 41: 97-100, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-36470773

RESUMO

PURPOSE: Hand, Foot and Mouth disease (HFMD) is a contagious pediatric viral disease caused due to enteroviruses (EV) of the family Picornaviridae. Cases of HFMD were reported from a tertiary care health centre, Udhampur, (Jammu and Kashmir), Northern India. The present study highlights the clinical and molecular virological aspects of HFMD cases. MATERIAL AND METHODS: Cases reported during August 2016-September 2017, and clinically diagnosed as HFMD of all age groups were included. Clinical, Biochemical and molecular virology aspects were compared. Clinical samples (n â€‹= â€‹50) such as vesicle swab, buccal and throat swabs were collected for enterovirus detection. EV-RNA was detected by 5'NCR based RT-PCR and genotyping by VP1 gene amplification and cycle sequencing. RESULTS: Of the cases of HFMD enrolled (n â€‹= â€‹50), highest (84%) were of children aged <5 years, presented either or both anathemas and exanthemas with prodromal symptoms (fever, irritability). Clinical presentations involved mainly oral ulcers on lips and tongue (48%). Oral erosions were either single or multiple in numbers. Exanthemas were seen on hand and palm, widely spread up to buttocks, legs, arms and trunk. Of these, six patients were found anemic. Complete blood count (CBC) indicated lymphocytosis and C-reactive protein (n â€‹= â€‹10) in children aged <5 years. EV-RNA was detected in 78% (39/50) of the clinical samples. VP1 gene based typing indicated the presence of CV-A16, CVA6 and EV-A71 types. CONCLUSIONS: The study highlights association of EVs in HFMD cases in the reported region. CV-A16, CV-A6 and EV-A71 types were reported for the first time from Udhampur (J&K), Northern India. No differences were observed in the clinical profile of EV strains detected. Circulation of the strains warrant and alarm outbreaks. More focused studies on HFMD and monitoring of viral strains is mandatory.


Assuntos
Infecções por Enterovirus , Enterovirus , Doença de Mão, Pé e Boca , Criança , Humanos , Lactente , Enterovirus/genética , Tipagem Molecular , Antígenos Virais/genética , Índia/epidemiologia , RNA , China/epidemiologia
19.
Infect Genet Evol ; 112: 105454, 2023 08.
Artigo em Inglês | MEDLINE | ID: mdl-37257799

RESUMO

Human adenoviruses (HAdVs) are the viral agents responsible for a wide spectrum of acute and chronic diseases. HAdVs are the most important etiological agents of acute gastroenteritis (AGE) and are identified as the major contributor to the deaths of diarrheal children globally. The significant rise in HAdV infections in rotavirus-vaccinated children documented in multiple studies demands continuous monitoring of HAdV strains. After the inclusion of rotavirus vaccines in the immunization schedule of India, public health research regarding prevalence, etiology, and risk factors is highly necessary for evidence-based policies and their implementation to sustain diarrhea prevention programs. In the present study, children admitted for AGE between 2013 and 2016 in seven different hospitals in Maharashtra and Gujrat states of Western India were subjected for investigation. HAdVs were found in 5.2% of the fecal specimens with the dominance of species-F (52.4%) strains, followed by the occurrence of non-enteric adenoviruses of species A (17.4%), C (11.4%), B (8.2%), and D (3.2%). The species-F strains were predominant in Ahmadabad (78.5%), Mumbai (61.5%), and Surat (57.1%) cities, followed by species-A strains. In Pune city, species B strains were detected in all HAdV patients, with none of the species A strains. Clinically, patients infected with enteric and non-enteric HAdV strains were indistinguishable. However, a high viral load was observed in species-F specimens as compared to non-species-F. The present study on fecal specimens collected in the pre-rotavirus vaccination era from hospitalized AGE patients will be important for future comparative analysis to know the exact impact of vaccination in children of Western India.


Assuntos
Infecções por Adenovirus Humanos , Adenovírus Humanos , Gastroenterite , Humanos , Criança , Lactente , Índia/epidemiologia , Infecções por Adenovirus Humanos/epidemiologia , Fezes , Análise de Sequência de DNA , Filogenia , Reação em Cadeia da Polimerase , Gastroenterite/epidemiologia , Diarreia , Adenovírus Humanos/genética , Genótipo
20.
Am J Trop Med Hyg ; 106(1): 229-232, 2021 10 25.
Artigo em Inglês | MEDLINE | ID: mdl-34695790

RESUMO

In rural India, since 2014, the Swachh Bharat Abhiyan (Clean India Mission) has ensured construction of more than 100 million toilets and is now focusing on reinforcement of sanitation behaviors. We report a cholera outbreak in a remote village in western India where open defecation was implicated in causation. A water pipeline was damaged in the vicinity of a stream flowing from a site of open defecation. Despite the availability of a toilet facility in the majority of households (75%), open defecation was widely practiced (62.8%). Many reported not washing hands with soap and water before eating (78.5%) and after defecation (61.1%). The study emphasizes the need for focused health behavior studies and evidence-based interventions to reduce the occurrence of cholera outbreaks. This could be the last lap in the path toward achieving the United Nations Sustainable Development Goal 6, which aims to "ensure availability and sustainable management of water and sanitation for all."


Assuntos
Cólera/prevenção & controle , Surtos de Doenças/prevenção & controle , Prática Clínica Baseada em Evidências/educação , Educação de Pacientes como Assunto , Cólera/epidemiologia , Comportamentos Relacionados com a Saúde/classificação , Comportamentos de Risco à Saúde , Humanos , Índia/epidemiologia , Educação de Pacientes como Assunto/estatística & dados numéricos , Fatores de Risco , População Rural
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