Characterization of the MIKCC-type MADS-box gene family in blueberry and its possible mechanism for regulating flowering in response to the chilling requirement.

MAIN CONCLUSION: The expression peak of VcAP1.4, VcAP1.6, VcAP3.1, VcAP3.2, VcAG3, VcFLC2, and VcSVP9 coincided with the endo-dormancy release of flower buds. Additionally, GA4+7 not only increased the expression of these genes but also promoted flower bud endo-dormancy release. The MIKCC-type MADS-box gene family is involved in the regulation of flower development. A total of 109 members of the MIKCC-type MADS-box gene family were identified in blueberry. According to the phylogenetic tree, these 109 MIKCC-type MADS-box proteins were divided into 13 subfamilies, which were distributed across 40 Scaffolds. The results of the conserved motif analysis showed that among 20 motifs, motifs 1, 3, and 9 formed the MADS-box structural domain, while motifs 2, 4, and 6 formed the K-box structural domain. The presence of 66 pairs of fragment duplication events in blueberry suggested that gene duplication events contributed to gene expansion and functional differentiation. Additionally, the presence of cis-acting elements revealed that VcFLC2, VcAG3, and VcSVP9 might have significant roles in the endo-dormancy release of flower buds. Meanwhile, under chilling conditions, VcAP3.1 and VcAG7 might facilitate flower bud dormancy release. VcSEP11 might promote flowering following the release of endo-dormancy, while the elevated expression of VcAP1.7 (DAM) could impede the endo-dormancy release of flower buds. The effect of gibberellin (GA4+7) treatment on the expression pattern of MIKCC-type MADS-box genes revealed that VcAP1.4, VcAP1.6, VcAP3.1, VcAG3, and VcFLC2 might promote flower bud endo-dormancy release, while VcAP3.2, VcSEP11, and VcSVP9 might inhibit its endo-dormancy release. These results indicated that VcAP1.4, VcAP1.6, VcAP1.7 (DAM), VcAP3.1, VcAG3, VcAG7, VcFLC2, and VcSVP9 could be selected as key regulatory promoting genes for controlling the endo-dormancy of blueberry flower buds.

Molecular characterization of SPL gene family during flower morphogenesis and regulation in blueberry.

The SPL gene is a plant-specific transcription factor involved in the regulation of plant growth and development, which have been identified in woody plants. The process of floral bud differentiation affects the timing of flowering and fruit set and regulates plant growth, however, the mechanism of regulation of flower development by SPL genes is less studied. In this study, 56 VcSPL genes were identified in the tetraploid blueberry. The VcSPL gene family was classified into six subfamilies, and analysis of cis-elements showed that VcSPL genes were regulated by light, phytohormones (abscisic acid, MeJA), and low temperature. In the evolutionary analysis, segmental replication may play an important role in VcSPL gene amplification. Interestingly, we also studied diploid blueberry (Bilberry), in which 24 SPL genes were identified, and 36 homologous pairs were found, suggesting a high degree of convergence in the syntenic relationship between blueberry (Vaccinium corymbosum L) and bilberry (Vaccinium darrowii). Based on the expression profile, VcSPL genes were expressed at high levels in flowers, shoots, and roots, indicating a diversity of gene functions. Then we selected 20 differentially-expressed SPL genes to further investigate the role of VcSPL in floral induction and initiation. It showed that the genes VcSPL40, VcSPL35, VcSPL45, and VcSPL53 may play a crucial role in the blueberry floral transition phase (from vegetative growth to flower initiation). These results provided important information for understanding and exploring the role of VcSPLs in flower morphogenesis and plant growth.

Identification of ARF family in blueberry and its potential involvement of fruit development and pH stress response.

BACKGROUND: Auxin responsive factor (ARF) family is one of core components in auxin signalling pathway, which governs diverse developmental processes and stress responses. Blueberry is an economically important berry-bearing crop and prefers to acidic soil. However, the understandings of ARF family has not yet been reported in blueberry. RESULTS: In the present study, 60 ARF genes (VcARF) were identified in blueberry, and they showed diverse gene structures and motif compositions among the groups and similar within each group in the phylogenetic tree. Noticeably, 9 digenic, 5 trigenic and 6 tetragenic VcARF pairs exhibited more than 95% identity to each other. Computational analysis indicated that 23 VcARFs harbored the miRNA responsive element (MRE) of miR160 or miR167 like other plant ARF genes. Interestingly, the MRE of miR156d/h-3p was observed in the 5'UTR of 3 VcARFs, suggesting a potentially novel post-transcriptional control. Furthermore, the transcript accumulations of VcARFs were investigated during fruit development, and three categories of transcript profiles were observed, implying different functional roles. Meanwhile, the expressions of VcARFs to different pH conditions (pH4.5 and pH6.5) were surveyed in pH-sensitive and tolerant blueberry species, and a number of VcARFs showed different transcript accumulations. More importantly, distinct transcriptional response to pH stress (pH6.5) were observed for several VcARFs (such as VcARF6s and VcARF19-3/19-4) between pH-sensitive and tolerant species, suggesting their potential roles in adaption to pH stress. CONCLUSIONS: Sixty VcARF genes were identified and characterized, and their transcript profiles were surveyed during fruit development and in response to pH stress. These findings will contribute to future research for eliciting the functional roles of VcARFs and regulatory mechanisms, especially fruit development and adaption to pH stress.

Response of metabolic and lipid synthesis gene expression changes in Camellia oleifera to mulched ecological mat under drought conditions.

Plants respond to adverse conditions by activating defense mechanisms that alter metabolism and impact agricultural crop yield. Organic mulching of Camellia oleifera leads to increased oil yield compared to control. In this study, multi-platform untargeted metabolomics and qRT-PCR were used to measure the effects of organic mulching on seed kernel metabolism. Metabolomics analysis revealed that tyrosine, tryptophan, and several flavonoids and polyphenol metabolites were significantly lower in the mulched treatment compared to the control, indicating lower stress levels with mulching. The qRT-PCR analysis showed that EAR, SAD, and CoHCD were up-regulated by mulching, while CT, FAD7, FAD8, CoATS1, SQS, SQE, FATB, and ß-AS were down-regulated. Correlation network analysis was used to integrate data from this multi-omics investigation to analyze the relationships between differentially expressed genes, metabolites, and fruit and soil indicators concerning mulch treatment of C. oleifera.

Preharvest and postharvest UV radiation affected flavonoid metabolism and antioxidant capacity differently in developing blueberries (Vaccinium corymbosum L.).

Flavonoids can protect plants against UV but the mechanism by which specific flavonoids during fruit development is unclear, especially in blueberries on living plants. We analyzed the gene expression and metabolite profiles of flavonols, proanthocyanidins (PAs), and anthocyanins under preharvest UV-B/-C and postharvest UV-A/-B/-C irradiation in developing blueberries. Both pre- and postharvest UV irradiation significantly increased flavonol accumulation during early fruit development, while increased anthocyanin and PA contents during late fruit development. However, PAs decreased during postharvest but increased during preharvest UV irradiation in green fruit. The antioxidant capacity increased by postharvest UV irradiation, while hardly affected by preharvest UV irradiation. Overall, the gene expression changes paralleled the flavonoid contents after UV irradiation. Notably, VcMYBPA1 was closely related with VcLAR and VcANR under pre- and postharvest UV irradiation, which could relate to PA biosynthesis. During natural fruit maturation and UV conditions, the elevated PA content exhibited higher potential antioxidant activity. Our results show that UV resistance is greater in living plants than detached fruits, the former showing a systemic and moderate response and the latter a non-systemic but strong response. These results might contribute to the development of pre- and postharvest technologies to promote healthier fruit consumption.

Transcriptional Activation of Anthocyanin Biosynthesis in Developing Fruit of Blueberries ( Vaccinium corymbosum L.) by Preharvest and Postharvest UV Irradiation.

The effect and mechanism of preharvest and postharvest ultraviolet (UV) irradiation on anthocyanin biosynthesis during blueberry development were investigated. The results showed that preharvest UV-B,C and postharvest UV-A,B,C irradiation significantly promoted anthocyanin biosynthesis and the transcripts of late biosynthetic genes (LBG) VcDFR, VcANS, VcUFGT, and VcMYB transcription factor as well as DFR and UFGT activities in anthocyanin pathway in a UV wavelength- and developmental stage-dependent manner. VcMYB expression was positively correlated with that of VcANS and VcUFGT and coincided with anthocyanin biosynthesis responding to the UV radiation. Sugar decreased during postharvest but increased during preharvest UV radiation in mature fruit. Our results indicate that UV-responsive production of anthocyanins is mainly caused by the activation of anthocyanin downstream pathway genes, which could be upregulated by VcMYB. Furthermore, different potential response mechanisms may exist between preharvest and postharvest UV radiation in blueberries, involving a systemic response in living plants and a nonsystemic response in postharvest fruit.

Activity and subcellular localization of glucose-6-phosphate dehydrogenase in peach fruits.

The subcellular distribution and activity of glucose-6-phosphate dehydrogenase (G6PDH, EC 1.1.1.49) were studied in developing peach (Prunus persica L. Batsch cv. Zaoyu) fruit. Fruit tissues were separated by differential centrifugation at 15,000g into plastidic and cytosolic fractions. There was no serious loss of enzyme activity (or activation) during the preparation of fractions. G6PDH activity was found in both the plastidic and cytosolic compartments. Moreover, DTT had no effect on the plastidic G6PDH activities, that is, the redox regulatory mechanism did not play an important role in the peach fleshy tissue. Results from the immunogold electron-microscope localization revealed that G6PDH isoenzymes were mainly present in the cytosol, the secondary wall and plastids (chloroplasts and chromoplasts), but scarcely found in the starch granules or the cell wall. In addition to a decrease in fruit firmness, the G6PDH activity in the cytotolic and plastidic fractions increased, and anthocyanin started to accumulate during fruit maturation. These results suggest that G6PDH, by providing precursors for metabolic processes, might be associated with the red coloration that occurs in peach fruit.

Improved determination of phoxim residue in stored wheat by HPLC with DAD.

This article presents an improved method to detect the phoxim residual in whole wheat grain (not milled). The authors used petroleum ether (PE) as solvent to extract phoxim in darkness, and then determined it with high-performance liquid chromatography (HPLC) with diode array detector (DAD) at 280 nm. Use of PE improved the extraction efficiency of phoxim from grain samples over those obtained using acetone, recovery of 83.3% and 65.9%, respectively. Light produced more side effect on the extraction of this pesticide than with darkness, recovery of 63.2% and 83.3%, respectively. The combination of PE with darkness yielded a higher recovery of phoxim in liquid-phase extraction. The peak area of phoxim compared with its absolute values of phoxim in standard solution concentration range from 0.005 mg/kg to 0.253 mg/kg showed a good linear calibration (R(2) = 0.9999). Recoveries, at spiked concentrations of 0.02, 0.05, and 0.10 mg/kg, varied between 83.3% and 106.3% with relative standard deviations (RSD) ranging from 6.5% to 8.0%. The present method provides sufficient sensitivity as reflected by the values of limit of detection (LOD) and limit of quantification (LOQ). LOD was 0.002 mg/kg (S/N 3), and the estimated LOQ was 0.006 mg/kg (S/N = 10). Use of the proposed method successfully detected phoxim residue in wheat grain from Beijing and Kunming City of China.

Immunohistochemical localization of IAA and ABP1 in strawberry shoot apexes during floral induction.

By using an anti-indole-acetic acid (anti-IAA) monoclonal antibody and an anti-auxin-binding protein 1 (anti-ABP1) polyclonal antibody, IAA and ABP1 were immunohistochemically localized in strawberry (Fragaria ananassa Duch.) shoot apexes during floral induction. The spatial distribution patterns of endogenous IAA and ABP1 and their dynamic changes during floral induction were investigated. In addition, the affect of 1-N-naphthylphtalamic acid (NPA) on IAA distribution during floral induction was also analyzed. The results showed that IAA was present in the shoot apexes throughout the floral induction process, gradually concentrating in the shoot apical meristem (SAM). The distribution of ABP1 and its dynamic changes were similar to those of IAA. In addition, the ABP1 immune signal in SAM gradually increased as floral induction developed. On a morphological level, these results indicate both the spatial distribution and dynamic changes in endogenous IAA and ABP1 during the floral induction process. The close correlation found between IAA and ABP1 indicates that a cooperation occurs during the regulation of floral induction. The results also suggest that IAA was the significant agent for floral induction, and that SAM might be the place of the main action. Treatment with NPA during floral induction prevented the accumulation of IAA in the SAM, delayed the process of floral differentiation and induced an abnormal flower development. It is likely that IAA in the shoot apex is produced in young leaves and transported through the vascular tissues to the SAM and other places of function. Finally, an appropriate amount of IAA in the SAM and normal polar auxin transport are essential for floral induction and differentiation in strawberries.