Relationships of tumor differentiation and immune infiltration in gastric cancers revealed by single-cell RNA-seq analyses.

Gastric cancers are highly heterogeneous malignant tumors. To reveal the relationship between differentiation status of cancer cells and tumor immune microenvironments in gastric cancer, single-cell RNA-sequencing was performed on normal mucosa tissue, differentiated gastric cancer (DGC) tissue, poorly differentiated gastric cancer (PDGC) tissue and neuroendocrine carcinoma (NEC) tissue sampled from surgically resected gastric cancer specimens. We identified the signature genes for both DGC and PDGC, and found that signature genes of PDGC strongly enriched in the epithelial-mesenchymal transition (EMT) program. Furthermore, we found that DGC tends to be immune-rich type whereas PDGC tends to be immune-poor type defined according to the density of tumor-infiltrating CD8+ T cells. Additionally, interferon alpha and gamma responding genes were specifically expressed in the immune-rich malignant cells compared with immune-poor malignant cells. Through analyzing the mixed adenoneuroendocrine carcinoma, we identified intermediate state malignant cells during the trans-differentiation process from DGC to NEC, which showed double-negative expressions of both DGC marker genes and NEC marker genes. Interferon-related pathways were gradually downregulated along the DGC to NEC trans-differentiation path, which was accompanied by reduced CD8+ cytotoxic T-cell infiltration. In summary, molecular features of both malignant cells and immune microenvironment cells of DGC, PDGC and NEC were systematically revealed, which may partially explain the strong tumor heterogeneities of gastric cancer. Especially along the DGC to NEC trans-differentiation path, immune-evasion was gradually enhanced with the decreasing activities of interferon pathway responses in malignant cells.

Updated incidence rates and risk factors of esophageal cancer in Nan'ao Island, a coastal high-risk area in southern China.

Esophageal cancer (EC) is one of the most common cancers in China. The purpose of this study was to investigate the updated incidence rates and risk factors of EC in Nan'ao Island, where the EC incidence rate was chronically the highest in southern China. To calculate the annual incidence rate, data on 338 EC cases from Nan'ao Cancer Registry system diagnosed during 2005-2011 were collected. A case-control study was conducted to explore the EC risk factors. One hundred twenty-five alive EC patients diagnosed during 2005-2011 and 250 controls were enrolled into the case-control study. A pre-test questionnaire on demography, dietary factors, drinking water treatment, and behavioral factors was applied to collect information of all participants. The average EC incidence rates during 2005-2011 were 66.09/105, 94.62/105, 36.83/105 for both genders, males and females, respectively, in Nan'ao Island. The EC incidence rate in males was 2.40- to 4.55-fold higher than that in females in the period from 2006 to 2011 (P < 0.05). Considering the onset age, males tend to be much younger than females and reached peak incidence rate at a younger age (P < 0.05). Drinking water treatment by filter (odds ratio [OR] = 0.28, 95% confidence interval [95% CI] = 0.13-0.58) and fruit consumption (OR = 0.55, 95% CI = 0.32-0.94) reduced the risk for EC. On the contrary, the pickled vegetables consumption (OR = 2.64, 95% CI = 1.46-4.76) and liquor drinking (OR = 2.32, 95% CI = 1.21-4.44) increased the risk for EC. These results may be of importance for future research on EC etiology and prevention strategies.

Characterization and comparative analyses of transcriptomes for in vivo and in vitro produced peri-implantation conceptuses and endometria from sheep.

An increasing number of reports indicate that in vitro fertilization (IVF) is highly associated with long­term side effects on embryonic and postnatal development, and can sometimes result in embryonic implant failure. While high­throughput gene expression analysis has been used to explore the mechanisms underlying IVF-induced side effects on embryonic development, little is known about the effects of IVF on conceptus-endometrial interactions during the peri-implantation period. Using sheep as a model, we performed a comparative transcriptome analysis between in vivo (IVO; in vivo fertilized followed by further development in the uterus) and in vitro produced (IVP; IVF with further culture in the incubator) conceptuses, and the caruncular and intercaruncular areas of the ovine endometrium. We identified several genes that were differentially expressed between the IVO and IVP groups on day 17, when adhesion between the trophoblast and the uterine luminal epithelium begins in sheep. By performing Gene Ontology enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, we found that, in the conceptus, differentially expressed genes (DEGs) were associated mainly with functions relating to cell binding and the cell cycle. In the endometrial caruncular area, DEGs were involved in cell adhesion/migration and apoptosis, and in the intercaruncular area, they were significantly enriched in pathways of signal transduction and transport. Thus, these DEGs are potential candidates for further exploring the mechanism underlying IVF/IVP-induced embryonic implant failure that occurs due to a loss of interaction between the conceptus and endometrium during the peri-implantation period.

Enzyme stoichiometry evidence revealed that five years nitrogen addition exacerbated the carbon and phosphorus limitation of soil microorganisms in a Phyllostachys pubescens forest.

The activity and stoichiometry of soil extracellular enzyme can provide a good indication for changes in soil nutrient availability and microbial demands for nutrients. However, it remains unclear how would nitrogen (N) deposition affect nutrient limitation of microbes in subtropical forest soils. We conducted a 5 years N addition experiment in a subtropical Phyllostachys pubescens forest. The soil nutrients and enzyme activities associated with carbon (C), N, and phosphorus (P) cycles were measured. We also examined the nutrient distribution of microorganisms using enzyme stoichiometry and vector analysis. The results showed that N addition significantly decreased the contents of soil soluble organic C and available P and increased that of available N. Furthermore, N addition significantly decreased ß-N-acetyl-glucosaminidase (NAG) activity and NAG/ microbial biomass carbon (MBC), and increased acid phosphatase (ACP) and ACP/MBC. The low and moderate N addition levels significantly increased enzyme C/P, vector length, and vector angle, but significantly decreased enzyme N/P. Results of redundancy analysis showed that the change in soil enzyme activity and enzymatic stoichiometry were mainly driven by soil available P content under N addition. In summary, N addition altered the microbial nutrient acquisition strategy, which increased nutrient allocation to P-acquiring enzyme production but reduced that to N-acquiring enzyme production. Moreover, N addition exacerbated the C and P limitation of soil microorganisms. Appropriate amount of P fertilizer could be applied to improve soil fertility of subtropical P. pubescens forest in the future.

[Responses of soil phosphorus fractions and microorganisms to nitrogen application in a subtropical Phyllostachys pubescen forest]. / 亚热带毛竹林土壤磷组分和微生物对施氮的响应.

Phosphorus (P) is an important nutrient for plant and microbial growth. Soil P availabi-lity is poor in subtropical areas. Long-term heavy nitrogen (N) deposition might further reduce P availability. The experiment was performed in a Phyllostachys pubescens forest in Daiyun Mountain. The effects of N application on soil basic physical and chemical properties, soil P fractions, microbial biomass, and acid phosphomonoesterase activity were analyzed after three years of N application. The results showed that N application significantly increased NO3--N content and thus soil N availability, while it significantly reduced the percentage of decomposable organic P to total P, with the ratio of carbon (C) to organic P being over 200. The soil microbial biomass C, microbial biomass P, acid phosphomonoesterase, and the ratio of microbial biomass N to microbial biomass P and microbial biomass C to microbial biomass P were increased as the N application rate increased. There was a significant negative correlation between the percentage of decomposable organic P to total P and microbial biomass P. Consequently, N application enhanced soil P limitation and increased microbial P demand.

Managing congestion at visitor hotspots using park-level use level data: Case study of a Chinese World Heritage Site.

Tourist congestion at hot spots has been a major management concern for UNESCO World Heritage Sites and other iconic protected areas. A growing number of heritage sites employ technologies, such as cameras and electronic ticket-checking systems, to monitor user levels, but data collected by these monitoring technologies are often under-utilized. In this study, we illustrated how to integrate data from hot spots by camera-captured monitoring and entrance counts to manage use levels at a World Heritage Site in Southeastern China. 6,930 photos of a congestion hotspot (scenic outlook on a trail) were collected within the park at a 10-minute interval over 105 days from January to November 2017. The entrance counts were used to predict daily average and maximum use level at the hotspots. Results showed that the average use level at the congestion hotspot did not exceed the use limit mandated by the park administration agency. However, from 9:20 am to 12:00 pm, the use level at hotspots exceeded visitor preferred use level. Visitor use level was significantly higher at the hotspot during a major Chinese "Golden Week". The daily entrance counts significantly predicted the average and maximum use level at the hotspot. Based on our findings, park managers can achieve the management goals by permitting the corresponding number of visitors passing the entrances. The gap manifested the complexities in visitor capacity management at high-use World Heritage Sites and other protected areas and calls for innovative monitoring and management strategies.

[Effects of nitrogen deposition on the concentration and spectral characteristics of dissolved organic matter in soil in Moso bamboo plantations.] / æ°®æ²‰é™å¯¹æ¯›ç«¹æž—åœŸå£¤å¯æº¶æ€§æœ‰æœºè´¨æ•°é‡ä¸Žå ‰è°±å­¦ç‰¹å¾çš„å½±å“.

The subtropical zone in China is one of the regions most affected by nitrogen deposition. Soil dissolved organic matter (DOM) is considered to be an important indicator of soil organic matter. Nitrogen deposition may alter the quality and quantity of soil DOM by changing soil microbial activity. In this study, we explored the effects of nitrogen addition on soil DOM content, its spectral characteristics and microbial extraceller enzyme activity in the Moso bamboo plantations by setting control (CT), low-nitrogen (LN), and high-nitrogen (HN) addition levels for three-year nitrogen addition. The results showed that there was no significant change in soil pH, dissolved organic carbon, dissolved organic nitrogen, and aroma index following nitrogen addition, while the humification index increased significantly, microbial enzyme activities increased first and then decreased with the increases of nitrogen addition. Fourier transform infrared spectroscopy results showed that soil DOM had similar absorption peaks in seven regions, and that the absorption peaks of 1000 to 1260 cm-1 were the strongest, indicating an enhanced amount of polysaccharides, alcohols, carboxyl acids, and esters after nitrogen addition. The results of three-dimensional fluorescence spectroscopy showed that soil DOM structure significantly changed following nitrogen addition, with a decrease in low-molecular substances such as protein-like substances and microbial metabolites and a significant increase in high-molecular substances such as humus-like substances. In general, nitrogen addition made soil nitrogen compatible with microbial requirements. Microorganisms decompose substances that were easily degraded in DOM. The structure of soil DOM was more complex after nitrogen addition. Therefore, short-term nitrogen deposition might be conducive to preserving soil fertility.

[Characteristics of soil phosphorus fractions of different vegetation types in subtropical forests and their driving factors.] / äºšçƒ­å¸¦ä¸åŒæ¤è¢«ç±»åž‹åœŸå£¤ç£·ç»„åˆ†ç‰¹å¾åŠå ¶å½±å“å› ç´ .

Soil P fraction, microbial biomass P (MBP), and activities of acid phosphomonoesterase (ACP) and phosphodiesterase (PD) were analyzed under evergreen broad-leaved forest, mixed forest and coniferous forest in Daiyun Mountains. The results showed that labile-P comprised only 1.0%-4.5% of soil total phosphorus (TP). The ratio of soil carbon to organic phosphorus (C:Po) was >200, indicating phosphorus limitation across the three vegetation types. Organic phosphorus (Po) was a significant fraction of soil P, which accounted for 44.8%-47.1% and 28.6%-30.6% of TP in A and B horizons, respectively. Results from the redundancy analysis showed that the changes in P fractions were mainly driven by PD in the A horizon and by ACP in the B horizon. Moreover, the activities of PD and ACP had a significant negative correlation with Po. The results suggested that phosphorus deficiency occurred in the three vegetation types, and that PD and ACP could play major roles in the depletion of soil Po in response to phosphorus limitation in subtropical forests.

[Phosphorus characteristics in rhizosphere soil of Cunninghamia lanceolata, Pinus massoniana and their mixed plantations].

In 2007-2010, a comparative study was conducted on the phosphorus characteristics in the rhizosphere soil of Cunninghamia lanceolata, Pinus massoniana and C. lanceolata-P. massoniana mixed plantations in a forest farm in Nanping City of Fujian Province, East China. In the rhizosphere soil of pure C. lanceolata and P. massoniana plantations, the content of available P was higher than that in non-rhizosphere soil. As compared with non-rhizosphere soil, the rhizophere soil in the three plantations had lower pH and O-P content but higher Al-P and Fe-P contents, and its P adsorption capacity was lower while the P desorption rate and desorbed P were in adverse. In the rhizophere soil of pure P. massoniana plantation, the contents of available P, Fe-P, and Al-P, their desorption rates, and desorption capacity were higher, but the O-P content and the adsorbed P were lower, as compared with those in the rhizophere soil of pure C. lanceolata plantation. In the mixed plantation, the P activation in rhizophere soil was further improved, being more obvious under C. lanceolata, which suggested that mixed plantation of C. lanceolata and P. massoniana could promote the phosphorus nutrition of C. lanceolata.