Application of non-negative matrix factorization in oncology: one approach for establishing precision medicine.

The increase in the expectations of artificial intelligence (AI) technology has led to machine learning technology being actively used in the medical field. Non-negative matrix factorization (NMF) is a machine learning technique used for image analysis, speech recognition, and language processing; recently, it is being applied to medical research. Precision medicine, wherein important information is extracted from large-scale medical data to provide optimal medical care for every individual, is considered important in medical policies globally, and the application of machine learning techniques to this end is being handled in several ways. NMF is also introduced differently because of the characteristics of its algorithms. In this review, the importance of NMF in the field of medicine, with a focus on the field of oncology, is described by explaining the mathematical science of NMF and the characteristics of the algorithm, providing examples of how NMF can be used to establish precision medicine, and presenting the challenges of NMF. Finally, the direction regarding the effective use of NMF in the field of oncology is also discussed.

X-DC: Explainable Deep Clustering Based on Learnable Spectrogram Templates.

Deep neural networks (DNNs) have achieved substantial predictive performance in various speech processing tasks. Particularly, it has been shown that a monaural speech separation task can be successfully solved with a DNN-based method called deep clustering (DC), which uses a DNN to describe the process of assigning a continuous vector to each time-frequency (TF) bin and measure how likely each pair of TF bins is to be dominated by the same speaker. In DC, the DNN is trained so that the embedding vectors for the TF bins dominated by the same speaker are forced to get close to each other. One concern regarding DC is that the embedding process described by a DNN has a black-box structure, which is usually very hard to interpret. The potential weakness owing to the noninterpretable black box structure is that it lacks the flexibility of addressing the mismatch between training and test conditions (caused by reverberation, for instance). To overcome this limitation, in this letter, we propose the concept of explainable deep clustering (X-DC), whose network architecture can be interpreted as a process of fitting learnable spectrogram templates to an input spectrogram followed by Wiener filtering. During training, the elements of the spectrogram templates and their activations are constrained to be nonnegative, which facilitates the sparsity of their values and thus improves interpretability. The main advantage of this framework is that it naturally allows us to incorporate a model adaptation mechanism into the network thanks to its physically interpretable structure. We experimentally show that the proposed X-DC enables us to visualize and understand the clues for the model to determine the embedding vectors while achieving speech separation performance comparable to that of the original DC models.

Supervised Determined Source Separation with Multichannel Variational Autoencoder.

This letter proposes a multichannel source separation technique, the multichannel variational autoencoder (MVAE) method, which uses a conditional VAE (CVAE) to model and estimate the power spectrograms of the sources in a mixture. By training the CVAE using the spectrograms of training examples with source-class labels, we can use the trained decoder distribution as a universal generative model capable of generating spectrograms conditioned on a specified class index. By treating the latent space variables and the class index as the unknown parameters of this generative model, we can develop a convergence-guaranteed algorithm for supervised determined source separation that consists of iteratively estimating the power spectrograms of the underlying sources, as well as the separation matrices. In experimental evaluations, our MVAE produced better separation performance than a baseline method.