Detalhe da pesquisa
1.
Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
PLoS Comput Biol
; 17(12): e1009687, 2021 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-34890406
2.
Tempo and mode of genome evolution in a 50,000-generation experiment.
Nature
; 536(7615): 165-70, 2016 08 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-27479321
3.
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis.
Nucleic Acids Res
; 48(D1): D579-D589, 2020 01 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-31647104
4.
MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.
Brief Bioinform
; 20(4): 1071-1084, 2019 07 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-28968784
5.
panRGP: a pangenome-based method to predict genomic islands and explore their diversity.
Bioinformatics
; 36(Suppl_2): i651-i658, 2020 12 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-33381850
6.
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
PLoS Comput Biol
; 16(3): e1007732, 2020 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-32191703
7.
The Arginine Deiminase Operon Is Responsible for a Fitness Trade-Off in Extended-Spectrum-ß-Lactamase-Producing Strains of Escherichia coli.
Antimicrob Agents Chemother
; 63(8)2019 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-31138573
8.
Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis.
Nat Chem Biol
; 13(8): 858-866, 2017 Aug.
Artigo
em Inglês
| MEDLINE | ID: mdl-28581482
9.
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes.
Nucleic Acids Res
; 45(D1): D517-D528, 2017 01 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-27899624
10.
GROOLS: reactive graph reasoning for genome annotation through biological processes.
BMC Bioinformatics
; 19(1): 132, 2018 04 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-29642842
11.
Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation.
BMC Genomics
; 19(1): 373, 2018 May 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-29783948
12.
The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria.
Environ Microbiol
; 19(3): 1103-1119, 2017 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-27902881
13.
Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria.
BMC Evol Biol
; 16: 86, 2016 Apr 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-27108090
14.
Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment.
Mol Biol Evol
; 32(11): 2897-904, 2015 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-26199375
15.
The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.
Environ Microbiol
; 18(10): 3403-3424, 2016 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-26913973
16.
Revealing the hidden functional diversity of an enzyme family.
Nat Chem Biol
; 10(1): 42-9, 2014 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-24240508
17.
Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.
Extremophiles
; 20(3): 301-10, 2016 May.
Artigo
em Inglês
| MEDLINE | ID: mdl-27039108
18.
RNase J depletion leads to massive changes in mRNA abundance in Helicobacter pylori.
RNA Biol
; 13(2): 243-53, 2016.
Artigo
em Inglês
| MEDLINE | ID: mdl-26726773
19.
Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load.
Proc Natl Acad Sci U S A
; 110(1): 222-7, 2013 Jan 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-23248287
20.
A new network representation of the metabolism to detect chemical transformation modules.
BMC Bioinformatics
; 16: 385, 2015 Nov 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-26573681