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1.
Mol Phylogenet Evol ; 57(3): 1037-48, 2010 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-20801224

RESUMO

Recently developed comparative phylogenetic methods offer a wide spectrum of applications in evolutionary biology, although it is generally accepted that their statistical properties are incompletely known. Here, we examine and compare the statistical power of the ML and Bayesian methods with regard to selection of best-fit models of fruiting-body evolution and hypothesis testing of ancestral states on a real-life data set of a physiological trait (autodigestion) in the family Psathyrellaceae. Our phylogenies are based on the first multigene data set generated for the family. Two different coding regimes (binary and multistate) and two data sets differing in taxon sampling density are examined. The Bayesian method outperformed Maximum Likelihood with regard to statistical power in all analyses. This is particularly evident if the signal in the data is weak, i.e. in cases when the ML approach does not provide support to choose among competing hypotheses. Results based on binary and multistate coding differed only modestly, although it was evident that multistate analyses were less conclusive in all cases. It seems that increased taxon sampling density has favourable effects on inference of ancestral states, while model parameters are influenced to a smaller extent. The model best fitting our data implies that the rate of losses of deliquescence equals zero, although model selection in ML does not provide proper support to reject three of the four candidate models. The results also support the hypothesis that non-deliquescence (lack of autodigestion) has been ancestral in Psathyrellaceae, and that deliquescent fruiting bodies represent the preferred state, having evolved independently several times during evolution.


Assuntos
Agaricales/genética , Evolução Molecular , Carpóforos/genética , Filogenia , Teorema de Bayes , DNA Fúngico/genética , Funções Verossimilhança , Modelos Genéticos , Alinhamento de Sequência , Análise de Sequência de DNA
2.
Mycol Res ; 112(Pt 10): 1165-85, 2008 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-18707856

RESUMO

Psathyrella species growing on dung or occasionally on dung in the Nordic countries were studied using morphological characters and nu-rDNA sequence data and type collections were examined when available. Fourteen species capable of growing on dung were identified. Descriptions are given of all dung-inhabiting species and to a lesser extent of the species occasionally growing on dung. Three new species are described: Psathyrella fimiseda, P. merdicola, and P. scatophila. P. stercoraria is described as a new species in order to validate the name. A key to the coprophilous species in Europe including the species described by Peck & Smith from North America is provided. The phylogenetic analyses recovered four major supported clades within Psathyrellaceae corresponding to Parasola, Coprinopsis, Lacrymaria/Spadiceae pro parte, and Psathyrella. The status of Coprinellus was ambiguous. The current morphology-based infrageneric classification of Psathyrella was not supported by the phylogenetic analyses and a coprophilous habit has apparently evolved on multiple occasions. Three new combinations are proposed: Parasola conopilus, Coprinopsis marcescibilis, and Coprinopsis pannucioides.


Assuntos
Agaricales/classificação , Agaricales/citologia , Núcleo Celular/genética , DNA Ribossômico/genética , Fezes/microbiologia , Microbiologia do Solo , Agaricales/genética , Agaricales/isolamento & purificação , Animais , DNA Fúngico/genética , Europa (Continente) , Dados de Sequência Molecular , Filogenia
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