General preadaptation of viral infectors to their hosts.

We tested the hypothesis of optimal adaptation of viral infectors to eukaryotic hosts, using (1) correlation in codon and amino acid usage between organisms, and (2) canonical correlation between groups of hosts and infectors. The codon correlations between parasites and hosts vary, being low between swine and African swine fever virus (ASF; r = 0.18), and highest between potato and potato virus X (r = 0.60). The correlations might indicate different stages of evolution toward optimal adaptation of the parasite codon distribution to the host tRNA pools. The amino acid correlations vary from r = 0.71 between pig and ASF, to 0.88 between catfish and its herpesvirus. It was observed that both in virus and hosts, there is a negative correlation between frequency of an amino acid and molecular weight. Therefore, it was advanced that viral infectors might be preadapted to their hosts because of similarities of the tRNA pools of hosts, and that evolution toward optimization would be dependent on the size of the divergence between the codon distributions of infector and host. Preadaptation does not imply origin of the virus by lateral transfer from the present host, since the correlation of the molecular weight of amino acids with their abundance in proteins is a general phenomenon.

Amino acid and codon use: in two influenza viruses and three hosts.

OBJECTIVE: The aim of this study was to compare the use of amino acids and codons in influenza viruses A and B and in their common hosts, to highlight any relevant difference. METHODS: The frequency of the 20 amino acids and of the 61 codons was studied in influenza viruses A, B, and in man, pig, and chicken. The correlation in amino acid and codon use among these hosts was calculated. RESULTS: The correlation between the frequency of the 20 amino acids and the molecular weight was also calculated and it was very similar in all studied hosts, ranging from 0.506 to 0.595. The correlation of codon frequency among these organisms was highest between man and chicken (r=0.974), and lowest between pig and virus B (r=0.147). CONCLUSIONS: The important correlation in codon use among the three hosts and the two viruses suggests there was a remote lateral gene transfer among the three hosts and the two viruses. The higher use of alanine, leucine, and proline in man versus virus A is significant.

Comparison of floor sanitation methods.

Two methods for cleaning waxed polyvinylchloride and porcelain grès hospital room floors were compared in order to determine their decontamination capacity: dry wiping followed by damp washing, and damp washing followed by dry wiping. Dry wiping followed by damp washing did not produce any significant reduction in the average bacterial load. However, damp washing followed by dry wiping reduced the bacterial load for both types of flooring. The difference was statistically significant.

The bactericidal effect of microwaves on Mycobacterium bovis dried on scalpel blades.

The action of microwaves on stainless steel scalpel blades contaminated with Mycobacterium bovis was investigated. The complete destruction of M. bovis was obtained with 4 min of microwave exposure. When the preparations were subjected to scanning electron microscopy, the bacteria had undergone a progressive series of alterations consisting, initially, of the formation of deep pits in the bacterial body and eventually the complete disintegration of the microorganisms. Such phenomena are less evident when this mycobacterium is exposed to other sterilization methods such as dry heat or autoclaving.

Endoscope washers--a protocol for their use.

A protocol for the disinfection of gastroduodenoscopes, retrograde cholangiopancreatography endoscopes and colonoscopes using endoscope washers is described. The process recommends initial manual washing with a disinfectant containing didecyldimethylammonium chloride, surfactants and enzymes, a second washing in the endoscope washer using a detergent associated with a bacteriostatic, fungistatic substance (benzoisothiazolone) and finally the use of a 2% glutaraldehyde product buffered at pH6. After treatment with 2% Steranios added to the washer, less than 1 micro-organism/ml liquid was found in the following units: 83% of the colonoscopes, 83% of the oesophagogastroduodenoscopes, 83% of the main channels of the retrograde cholangiopancreatography endoscopes and 75% of the auxiliary channels of the latter instruments. In 14% of the colonoscopes, 42% of the gastroduodenoscopes, 42% of the main and 50% of auxiliary channels in the retrograde cholangiopancreatography endoscopes there were no signs of microbial growth in the wash liquid. The results obtained indicated that this protocol allowed adequate disinfection of the endoscope channels, structurally the most difficult part of the instrument to disinfect. Emphasis is given to the degree by which instrument contamination can increase during overnight storage, suggesting that endoscopes need to be submitted to further disinfection after overnight storage. Moreover, the water flowing into the washers can also cause instrument recontamination, particularly during the final rinses. Therefore, to better safeguard the health of patients undergoing endoscopy, special care must be taken to maintain the filters and disinfect the washers themselves, no matter how effective the disinfection protocol used may be.

Evaluation of the bactericidal effect of five products for surgical hand disinfection according to prEN 12054 and prEN 12791.

Surgical hand disinfection (with an alcohol-based hand rub) and surgical handwash (with an antiseptic-based liquid soap) are accepted measures to reduce the risk for surgical site infections. The new European Standards allow a comparison of their antimicrobial efficacy. The bactericidal activity of surgical hand rubs [Sterillium and Softaman, (active ingredient=alcohols)] and handwashes [Derman plus (triclosan), Hibiscrub (chlorhexidine) and Betadine (PVP-iodine)] was tested according to the prEN 12054 suspension test using Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus and Enterococcus hirae, and to prEN 12791 for the effect on resident skin flora in comparison with 1-propanol, 60% (v/v). All five products achieved a reduction of test bacteria within 3 min of >10(5)-fold so fulfilling prEN 12054. However, only Hibiscrub, Sterillium and Softa Man met the requirements of prEN 12791, giving a mean reduction of resident micro-organisms (immediate and sustained effect) which was not significantly lower than the reference alcohol (P>0.1; Wilcoxon matched-pairs signed-rank test). Sterillium was significantly more effective than the reference alcohol (immediate and sustained affect). Products for surgical hand disinfection may have equal antimicrobial activity in suspension tests but show large differences under practical conditions. Healthcare workers should not rely on results from suspension tests when deciding on a product for surgical hand disinfection.

Hospital use of decontaminating mats.

Decontaminating mats made of several layers of adhesive sheets (water-based acrylic 6 g/m2) supplemented with a bactericidal agent (3-1 benzoisothiazolin) at a concentration of 25% were placed in the passages providing access to the operating rooms of an orthopaedic service. Contact plates containing tryptone soy agar were used to assess bacterial concentration at specific points in front of and beyond the mats. For trolley passageways two areas were defined: central and lateral paths, corresponding to the areas walked upon by the personnel pushing the trolleys and to the paths covered by the trolley wheels, respectively. In order to exclude a simple mechanical effect, a comparison of bacterial loads at defined sites beyond the mats was carried out in the presence and in the absence of decontaminating mats. Bacterial colony counts in the presence of decontaminating mats were substantially and statistically significantly reduced compared with the absence of mats. The lower mean number of colony-forming units detected at points located beyond the mats parallels this finding; this difference is also statistically significant. We thus conclude that decontaminating mats are potentially useful in decreasing micro-organism carry-over due to personnel or the passage of trolleys into areas at high risk of infection such as operating rooms.

"In vitro" effect of progesterone on alpha-L-fucosidase activity of human endometrium.

Alpha-L-fucosidase activity was found to be increased in organ cultured normal endometrium and in endometrial adenocarcinoma compared with non cultured tissue. The enzyme activity was lowered with addition of progesterone to the medium. Non cultured adenocarcinoma showed a higher activity compared with non cultured normal endometrium.

[Experimental tests of a microwave sterilization system]. / Prove sperimentali su di un sistema di sterilizzazione a micro-onde.

Data obtained in our experiments indicate that the microwave sterilization system utilized may be considered as a practical and rapid method for decontaminating steel surgical instruments. For the tested organisms (7 Gram- and 2 Gram+ genera) a 3' exposure time to microwaves provides successful sterilization. Microwave irradiation also had a killing action against Bacillus subtilis spores. A study by SEM of microwave treated spores shows typical morphological alterations of spore surfaces.

Codon and aminoacid usage patterns in mycobacteria.

The large number of organisms and of genes sequenced at the present time permits now to study molecular evolution in such lower clades as genera, species, and subspecies. Here, we focus our attention on the genus Mycobacterium, in which we examined codon and aminoacid usage in 13 species, and in 12 subspecies for a total of 8,836,513 codons from 26,755 sequences. Within the genus Mycobacterium, frequencies of codon and aminoacid usage correlate between species and between subspecies. In the groups studied, aminoacid molecular weight and codon degeneracy influence correlations between frequencies, while GC content is the main factor influencing the effective number of codons. The coding GC, which is highly correlated with total genomic GC content, seems to be the main factor influencing present synonymous codon usage in the genus. In particular, the GC content at the 3rd base position seems to shape heavily the effective number of codons, giving indication that here mutational bias dominates over translational selection. Evolutionary trees based on codon and aminoacid usage are consistent with traditional phylogenies of species within the genus.

[Effect on erythropoiesis of conditioned media of mammal erythrocytes]. / Azione sull'eritropoiesi di mezzi condizionati di eritrociti di mammiferi.

It is known that a medium conditioned by erythrocytes (ECM) reduces 59Fe uptake into haem in hemopoietic cell cultures. In order to evaluate if the release of this factor in conditioned media is correlated with the whole erythrocyte surface, the same volume of packed erythrocytes of Mammals characterized by different MCV were incubated according to the method of Cole and Regan (1977). The influence of these conditioned media upon 59Fe uptake into haem in cultures of Guinea pig bone marrow cells was studied. Our results demonstrate that ECM of lamb erythrocytes (MCV = 28) caused a more marked depression of haem synthesis in vitro than ECM of calf (MCV = 34) and Guinea pig (MCV = 69) erythrocytes, and that this inhibitory effect is correlated to the MCV of considered erythrocytes.

Inhibition by beta-thalassemic erythrocytes of erythropoiesis in vitro.

It is known that a medium conditioned by erythrocytes (ECM) reduces 59Fe uptake into haem in haemopoietic cell cultures. In order to evaluate whether the release of this factor in conditioned media is correlated with the whole erythrocyte surface, the same volume of packed erythrocytes of beta-thalassemic and normal subjects were incubated according to the method of Cole and Regan (1977). The influence of these conditioned media upon 59Fe uptake into haem in cultures of guinea pig bone marrow cells was studied. The results demonstrate that ECM of beta-thalassemic erythrocytes caused a more marked depression than ECM of normal erythrocytes, and that this inhibitory effect was correlated with the mean corpuscular volume (MCV) of the erythrocytes investigated.

Microwave sterilization of enterobacteria.

A new method is described which makes it possible to treat metal materials with microwaves. In consequence scalpel blades as well as cover glasses contaminated with four species of bacteria (Salmonella typhi, Proteus mirabilis, Escherichia coli and Pseudomonas aeruginosa) were sterilized. With this method sterilization can be achieved quite rapidly (1.5-2 min). Scanning electron microscopy revealed a progressive alteration in the morphology of micro-organisms and this proved proportional to the microwave exposure time. Only in Proteus mirabilis were no modifications found, even after long periods of microwave exposure.

Effect of microwave radiation on Candida albicans.

Microwave exposure (90 s) provides an effective, rapid sterilization for surgical scalpel blades which have been contaminated with Candida albicans. SEM analysis showed that microwave irradiation induced a morphological modification of the cells. The longer the exposure time the greater such alterations and this micro-organism in effect fractures after 9 min. No evidence was found of morphological alteration of the fungus after being submerged in boiling water for the same amount of time even though cell death was actually achieved.

[Effect of microwaves on the vegetative and spore forms of Bacillus stearothermophilus]. / Azione delle microonde su forme vegetative e spore di Bacillus stearothermophilus.

Microwave irradiation provides a rapid and effective method for sterilization of stainless steel scalpel blades or cover glasses contaminated by B. stearothermophilus. A study by SEM of vegetative forms showed that microwave irradiation induce a progressive series of alterations and finally the complete destruction of the microorganism. On the contrary there were no significant morphological variations of the spores after lethal irradiation by microwaves.