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DNA has long been used as a template for the construction of helical assemblies of inorganic nanoparticles1-5. For example, gold nanoparticles decorated with DNA (or with peptides) can create helical assemblies6-9. But without such biological ligands, helices are difficult to achieve and their mechanism of formation is challenging to understand10,11. Atomically precise nanoclusters that are protected by ligands such as thiolate12,13 have demonstrated hierarchical structural complexity in their assembly at the interparticle and intraparticle levels, similar to biomolecules and their assemblies14. Furthermore, carrier dynamics can be controlled by engineering the structure of the nanoclusters15. But these nanoclusters usually have isotropic structures16,17 and often assemble into commonly found supercrystals18. Here we report the synthesis of homodimeric and heterodimeric gold nanoclusters and their self-assembly into superstructures. While the homodimeric nanoclusters form layer-by-layer superstructures, the heterodimeric nanoclusters self-assemble into double- and quadruple-helical superstructures. These complex arrangements are the result of two different motif pairs, one pair per monomer, where each motif bonds with its paired motif on a neighbouring heterodimer. This motif pairing is reminiscent of the paired interactions of nucleobases in DNA helices. Meanwhile, the surrounding ligands on the clusters show doubly or triply paired steric interactions. The helical assembly is driven by van der Waals interactions through particle rotation and conformational matching. Furthermore, the heterodimeric clusters have a carrier lifetime that is roughly 65 times longer than that of the homodimeric clusters. Our findings suggest new approaches for increasing complexity in the structural design and engineering of precision in supercrystals.
Assuntos
Ouro/química , Nanopartículas Metálicas/química , Cristalização , DNA/química , Ligantes , Modelos MolecularesRESUMO
Regarded as a superior urban stormwater management solution, rain gardens can effectively store rainfall runoff and purify water quality. However, the efficiency of traditional rain gardens (TRG) in regulating runoff and removing nitrogen and phosphorus varies under different hydrological conditions. In this study, the TRG was retrofitted to construct a two-stage tandem rain garden (TTRG). Based on the experimental monitoring of rain gardens under natural rainfall from 2011 to 2013, results indicated a significantly higher runoff reduction capacity for the TTRG compared to the traditional garden (p < 0.05), with average runoff and peak flow reduction rates increasing by 42.8% and 36.2%, respectively. Rainfall characteristics significantly impacted the runoff reduction of the TRG (p < 0.05), but not the TTRG (p > 0.05), demonstrating the enhanced control and stability of the TTRG in managing rainfall runoff. The concentration removal efficiency of nitrate nitrogen (NO3--N) was significantly improved (p < 0.05), whereas the total phosphorus (TP), ammonium nitrogen (NH3-N) and total nitrogen (TN) were not significantly changed (p > 0.05). The first-order kinetic model was used to fit the removal effect of different pollutants before and after retrofitting the rain garden, and the removal of NO3--N by the TTRG was better than that of the TRG. The TTRG showed significantly higher load removal efficiencies for TP, NO3--N, and NH3-N compared to TRG (p < 0.05), with average load removal rates increasing by 49.92%, 75.02%, and 14.81%, respectively. The TTRG can regulate urban rainfall runoff more efficiently and stably. By changing the water flow path in the rain garden, the TTRG has a better runoff reduction ability and pollutant purification effect.
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Vanillin holds significant importance as a flavoring agent in various industries, including food, pharmaceuticals, and cosmetics. The CoA-dependent pathway for the biosynthesis of vanillin from ferulic acid involved feruloyl-CoA synthase (Fcs) and enoyl-CoA hydratase/lyase (Ech). In this research, the Fcs and Ech were derived from Streptomyces sp. strain V-1. The sequence conservation and structural features of Ech were analyzed by computational techniques including sequence alignment and molecular dynamics simulation. After detailed study for the major binding modes and key amino acid residues between Ech and substrates, a series of mutations (F74W, A130G, A130G/T132S, R147Q, Q255R, ΔT90, ΔTGPEIL, ΔN1-11, ΔC260-287) were obtained by rational design. Finally, the yield of vanillin produced by these mutants was verified by whole-cell catalysis. The results indicated that three mutants, F74W, Q147R, and ΔN1-11, showed higher yields than wild-type Ech. Molecular dynamics simulations and residue energy decomposition identified the basic residues K37, R38, K561, and R564 as the key residues affecting the free energy of binding between Ech and feruloyl-coenzyme A (FCA). The large changes in electrostatic interacting and polar solvating energies caused by the mutations may lead to decreased enzyme activity. This study provides important theoretical guidance as well as experimental data for the biosynthetic pathway of vanillin.
Assuntos
Liases , Enoil-CoA Hidratase/genética , Benzaldeídos , AminoácidosRESUMO
Metallic-state gold nanorods are well known to exhibit strong longitudinal plasmon excitations in the near-infrared region (NIR) suitable for photothermal conversion. However, when the size decreases below â¼2 nm, Au nanostructures become nonmetallic, and whether the longitudinal excitation in plasmonic nanorods can be inherited is unknown. Here, we report atomically precise rod-shaped Au42(SCH2Ph)32 with a hexagonal-close-packed Au20 kernel of aspect ratio as high as 6.2, which exhibits an intense absorption at 815 nm with a high molar absorption coefficient of 1.4 × 105 M-1 cm-1. Compared to other rod-shaped nanoclusters, Au42 possesses a much more effective photothermal conversion with a large temperature increase of â¼27 °C within 5 min (λex = 808 nm, 1 W cm-2) at an ultralow concentration of 50 µg mL-1 in toluene. Density functional theory calculations show that the NIR transition is mainly along the long axis of the Au20 kernel in Au42, i.e., a longitudinal excitonic oscillation, akin to the longitudinal plasmon in metallic-state nanorods. Transient absorption spectroscopy reveals that the fast decay in Au42 is similar to that of shorter-aspect-ratio nanorods but is followed by an additional slow decay with a long lifetime of 2400 ns for the Au42 nanorod. This work provides the first case that an intense longitudinal excitation is obtained in molecular-like nanorods, which can be used as photothermal converters and hold potential in biomedical therapy, photoacoustic imaging, and photocatalysis.
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Nanoestruturas , Nanotubos , Ouro/química , Nanoestruturas/química , Nanotubos/químicaRESUMO
Accomplishing optical activity in achiral materials has long been a challenge. Achiral nanomaterials that crystallize in achiral point groups are generally optically inactive. Herein we report the surprising observation of optical activity in several achiral point groups for supercrystals assembled from anisotropic metal nanoclusters with atomic precision. By analyzing multiple achiral nanoclusters with different molecular structures and symmetry space groups, we have identified that the molecular anisotropy of nanocluster entities and their asymmetric arrangement in point groups of supercrystals are the two key factors for the realization of optical activity in such supercrystals. We have further exploited the polarization effect of the nanocluster supercrystals as a polarization switch that can alter the polarized state of the linearly polarized light. Our findings have broadened the fundamental principles for producing nanomaterial-based optical activity and devices with polarization effects.
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Nanoestruturas , Anisotropia , Cristalografia , Estrutura Molecular , Rotação OcularRESUMO
Trigeminal neuralgia (TN) is a common type of peripheral neuralgia in clinical practice, which is usually difficult to cure. Common analgesic drugs are difficult for achieving the desired analgesic effect. Syb-prII-1 is a ß-type scorpion neurotoxin isolated from the scorpion venom of Buthus martensi Karsch (BmK). It has an important influence on the voltage-gated sodium channel (VGSCs), especially closely related to Nav1.8 and Nav1.9. To explore whether Syb-prII-1 has a good analgesic effect on TN, we established the Sprague Dawley (SD) rats' chronic constriction injury of the infraorbital nerve (IoN-CCI) model. Behavioral, electrophysiological, Western blot, and other methods were used to verify the model. It was found that Syb-prII-1 could significantly relieve the pain behavior of IoN-CCI rats. After Syb-prII-1 was given, the phosphorylation level of the mitogen-activated protein kinases (MAPKs) pathway showed a dose-dependent decrease after IoN-CCI injury. Moreover, Syb-prII-1(4.0 mg/kg) could significantly change the steady-state activation and inactivation curves of Nav1.8. The steady-state activation and inactivation curves of Nav1.9 were similar to those of Nav1.8, but there was no significant difference. It was speculated that it might play an auxiliary role. The binding mode, critical residues, and specific interaction type of Syb-prII-1 and VSD2rNav1.8 were clarified with computational simulation methods. Our results indicated that Syb-prII-1 could provide a potential treatment for TN by acting on the Nav1.8 target.
Assuntos
Venenos de Escorpião , Neuralgia do Trigêmeo , Analgésicos/farmacologia , Animais , Proteínas Quinases Ativadas por Mitógeno , Neurotoxinas/toxicidade , Ratos , Ratos Sprague-Dawley , Venenos de Escorpião/química , Venenos de Escorpião/farmacologia , Escorpiões/químicaRESUMO
Electrocatalytic hydrogen evolution reaction (HER) holds promise in the renewable clean energy scheme. Crystalline Au and Ag are, however, poor in catalyzing HER, and the ligands on colloidal nanoparticles are generally another disadvantage. Herein, we report a thiolate (SR)-protected Au36Ag2(SR)18 nanocluster with low coverage of ligands and a core composed of three icosahedral (Ih) units for catalyzing HER efficiently. This trimeric structure, together with the monomeric Ih Au25(SR)18- and dimeric Ih Au38(SR)24, constitutes a unique series, providing an opportunity for revealing the correlation between the catalytic properties and the catalyst's structure. The Au36Ag2(SR)18 surprisingly exhibits high catalytic activity at lower overpotentials for HER due to its low ligand-to-metal ratio, low-coordinated Au atoms and unfilled superatomic orbitals. The current density of Au36Ag2(SR)18 at -0.3 V vs RHE is 3.8 and 5.1 times that of Au25(SR)18- and Au38(SR)24, respectively. Density functional theory (DFT) calculations reveal lower hydrogen binding energy and higher electron affinity of Au36Ag2(SR)18 for an energetically feasible HER pathway. Our findings provide a new strategy for constructing highly active catalysts from inert metals by pursuing atomically precise nanoclusters and controlling their geometrical and electronic structures.
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Ouro/química , Hidrogênio/química , Nanopartículas Metálicas/química , Nanotecnologia , Catálise , Teoria da Densidade Funcional , Elétrons , Prata/químicaRESUMO
Thiolate-protected nanoclusters with different charge states usually show similar structure frameworks but different electronic configurations, which are proved to dramatically affect their properties such as magnetism, photoluminescence, and catalytic activity. Until now, few nanoclusters with alterable charge states have been reported and only some of them are structurally solved, limiting the in-depth studies on their interesting properties. Here, a new AuCu alloy nanocluster [Au18 Cu32 (SPhCl)36 ]2- (HSPhCl = 4-chlorophenylthiophenol) is synthesized and structurally solved by X-ray crystallography. Interestingly, it is found that this nanocluster can be reduced to another nanocluster with a different charge state, that is, [Au18 Cu32 (SPhCl)36 ]3- . This change in charge states is clearly proved by X-ray crystallography, electrospray ionization mass spectrometry, thermogravimetric analysis, and electron paramagnetic resonance. Furthermore, several redox methods are carried out to realize the reversible interconversion between these two nanoclusters, including electrochemical redox, introduction of H2 O2 /NaBH4 , and oxidation with silica under air atmosphere. This work offers new insight into the transform progress of charge states with AuCu alloy nanoclusters which contributes to the understanding of the relationship between electronic structure and properties of nanoclusters and further development of AuCu nanoclusters with excellent performance.
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The structure/composition of nanoclusters has a decisive influence on their physicochemical properties. In this work, we obtained two different Au-Ag nanoclusters, [Au9Ag12(SAdm)4(dppm)6Cl6]3+ and Au11Ag6(dppm)4(SAdm)4(CN)4, via controlling the Au/Ag molar ratios by a one-pot synthetic approach. The structure of nanoclusters was confirmed and testified by single-crystal x-ray diffraction, electrospray ionization time-of-flight mass spectrometry, XPS, powder x-ray diffraction, and electron paramagnetic resonance. The Au11Ag6 nanocluster possessed a M13 core caped by four Au atoms and four dppm and four AdmS ligands. Interestingly, four CN are observed to locate at the equator of the M13 core. Both nanoclusters contain a similar icosahedral M13 core, whereas their surface structures are totally different. However, the Au11Ag6 nanocluster exhibits good stability and strong red photoluminescence in solution.
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Atom-by-atom manipulation on metal nanoclusters (NCs) has long been desired, as the resulting series of NCs can provide insightful understanding of how a single atom affects the structure and properties as well as the evolution with size. Here, we report crystallizations of Au22(SAdm)16 and Au22Cd1(SAdm)16 (SAdm = adamantanethiolate) which link up with Au21(SAdm)15 and Au24(SAdm)16 NCs and form an atom-by-atom evolving series protected by the same ligand. Structurally, Au22(SAdm)16 has an Au3(SAdm)4 surface motif which is longer than the Au2(SAdm)3 on Au21(SAdm)15, whereas Au22Cd1(SAdm)16 lacks one staple Au atom compared to Au24(SAdm)16 and thus the surface structure is reconstructed. A single Cd atom triggers the structural transition from Au22 with a 10-atom bioctahedral kernel to Au22Cd1 with a 13-atom cuboctahedral kernel, and correspondingly, the optical properties are dramatically changed. The photoexcited carrier lifetime demonstrates that the optical properties and excited state relaxation are highly sensitive at the single atom level. By contrast, little change in both ionization potential and electron affinity is found in this series of NCs by theoretical calculations, indicating the electronic properties are independent of adding a single atom in this series. The work provides a paradigm that the NCs with continuous metal atom numbers are accessible and crystallizable when meticulously designed, and the optical properties are more affected at the single atom level than the electronic properties.
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An understanding of the response of nanomaterials to specific environmental parameters is an essential prerequisite for their practical use, especially in living systems. Herein, we disclose the preparation of a water-soluble nanocluster Au16(SR)12 (SR denotes deprotonated captopril) and its characterization by a combination of theoretical (e.g., density functional theory calculations) and experimental (UV-vis, electrospray ionization mass spectrometry, etc.) methods. Interestingly, Au16(SR)12 was found to convert to Au18(SR)14 under acidic conditions, while the reverse conversion from Au18(SR)14 to Au16(SR)12 occurred upon the addition of base. A mechanistic investigation determined this pH regulation to originate from the distinct steric and electrostatic properties of these two clusters. This study is the first to report the susceptibility of Au18(SR)14 and Au16(SR)12 to pH, and the distinct pH stability unambiguously reveals the importance of size-tracking of nanomaterials in living systems for future clinical applications.
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Cloperastine is a central antitussive used to reduce the frequency and intensity of coughing on a short-term basis. In this study, a reliable chiral LC-MS/MS technology has been developed for the quantification of cloperastine enantiomers in the rat plasma. Carbinoxamine was selected as the internal standard. The enantioseparation of cloperastine was performed on a Chiralpak IA column with a mobile phase composed of acetonitrile-water-ammonium hydroxide (80:20:0.1, v/v/v) at a flow rate of 0.6 mL/min. Cloperastine enantiomers were detected by mass spectrometry in multiple reaction monitoring mode with a positive electrospray ionization source. The method was validated over the linear concentration range of 0.05 to 10.0 ng/mL (5.0 × 10-4 ng to 0.10 ng) for both enantiomers. The lower limit of quantification (LLOQ) for each analyte was determined as 0.05 ng/mL. The relative standard deviations (RSDs) of intraday and interday precision was less than 13.9%, and the relative error (RE) of accuracy ranged from -5.4% to 6.1%, which were within the acceptance criteria. Finally, an application to the stereoselective pharmacokinetics of cloperastine in rats was successfully realized in our assay. The developed method on a commercially available Chiralpak IA column under isocratic mobile phase is advantageous to analyze cloperastine enantiomers in plasma samples collected for enantioselective metabolism or drug interaction studies.
Assuntos
Cromatografia Líquida/métodos , Piperidinas/sangue , Piperidinas/farmacocinética , Espectrometria de Massas em Tandem/métodos , Animais , Limite de Detecção , Piperidinas/química , Ratos , Estereoisomerismo , Distribuição TecidualRESUMO
Atomically precise gold nanocluster based on linear assembly of repeating icosahedrons (clusters of clusters) is a unique type of linear nanostructure, which exhibits strong near-infrared absorption as their free electrons are confined in a one-dimensional quantum box. Little is known about the carrier dynamics in these nanoclusters, which limit their energy-related applications. Here, we reported the observation of exciton localization in triicosahedral Au37 nanoclusters (0.5 nm in diameter and 1.6 nm in length) by measuring femtosecond and nanosecond carrier dynamics. Upon photoexcitation to S1 electronic state, electrons in Au37 undergo â¼100-ps localization from the two vertexes of three icosahedrons to one vertex, forming a long-lived S1* state. Such phenomenon is not observed in Au25 (dimer) and Au13 (monomer) consisting of two and one icosahedrons, respectively. We have further observed temperature dependence on the localization process, which proves it is thermally driven. Two excited-state vibration modes with frequencies of 20 and 70 cm-1 observed in the kinetic traces are assigned to the axial and radial breathing modes, respectively. The electron localization is ascribed to the structural distortion of Au37 in the excited state induced by the strong coherent vibrations. The observed electron localization phenomenon provides unique physical insight into one-dimensional gold nanoclusters and other nanostructures, which will advance their applications in solar-energy storage and conversion.
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Enantiomeric separation of six ß-adrenergic blockers was systematically studied for the first time on a polysaccharide-based chiral stationary phase, i.e. Chiralpak IB, under the normal-phase mode. The effect of alcohol modifiers, alcohol content and basic additive on enantiomeric separation was evaluated and optimized. Under the optimal conditions, the enantiomers of atenolol, bevantolol, cartelol, esmolol, metoprolol and propranolol were all baseline resolved with resolutions of 1.50, 8.56, 2.05, 2.11, 3.56 and 4.02, respectively. Additionally, molecular docking was tested to explain chiral recognition mechanisms of this set of the drug enantiomers on Chiralpak IB. The details of the various interactions affecting enantiomeric separation were confirmed from the molecular level and the modeling data were in agreement with the chromatographic results concerning the enantioselectivity.
Assuntos
Antagonistas Adrenérgicos beta/química , Antagonistas Adrenérgicos beta/isolamento & purificação , Cromatografia Líquida/métodos , Cromatografia Líquida/instrumentação , Simulação de Acoplamento Molecular , EstereoisomerismoRESUMO
Human Cav1.3 (hCav1.3) is of great interest as a potential target for Parkinson's disease. However, common medications like dihydropyridines (DHPs), a kind of classic calcium channel blocker, have poor selectivity to hCav1.3 in clinical treatment, mainly due to being implicated in cardiovascular side-effects mediated by human Cav1.2 (hCav1.2). Recently, pyrimidine-2,4,6-triones (PYTs) have received extensive attention as prominent selective inhibitors to hCav1.3. In this study, we describe the selectivity mechanism of PYTs for hCav1.2 and hCav1.3 based on molecular dynamic simulation methods. Our results reveal that the van der Waals (vdW) interaction was the most important force affecting selectivity. Moreover, the hydrophobic interaction was more conducive to the combination. The highly hydrophobic amino acid residues on hCav1.3, such as V162 (IR1), L303 (IR2), M481 (IR3), and F484 (IR3), provided the greatest contributions in the binding free energy. On the other hand, the substituents of a halogen-substituted aromatic ring, cycloalkyl and norbornyl on PYTs, which are pertinent to the steric hindrance of the compounds, played core roles in the selectivity and affinity for hCav1.3, whereas strong polar substituents needed to be avoided. The findings could provide valuable information for designing more effective and safe medicines for Parkinson's disease.
Assuntos
Canais de Cálcio Tipo L/química , Simulação de Dinâmica Molecular , Pirimidinonas/química , Pirimidinonas/farmacologia , Sítios de Ligação , Bloqueadores dos Canais de Cálcio/química , Bloqueadores dos Canais de Cálcio/farmacologia , Humanos , Interações Hidrofóbicas e Hidrofílicas , Modelos Moleculares , Conformação Molecular , Estrutura Molecular , Ligação Proteica , Domínios e Motivos de Interação entre Proteínas , Relação Estrutura-AtividadeRESUMO
Precise atomic structure of metal nanoclusters (NCs) is fundamental for elucidating the structure-property relationships and the inherent size-evolution principles. Reported here is the largest known FCC-based (FCC=face centered cubic) silver nanocluster, [Ag100 (SC6 H3 3,4 F2 )48 (PPh3 )8 ]- : the first all-octahedral symmetric nesting Ag nanocluster with a four-layered Ag6 @Ag38 @Ag48 S24 @Ag8 S24 P8 structure, consistent symmetry elements, and a unique rhombicuboctahedral morphology distinct from theoretical predictions and previously reported FCC-based Ag clusters. DFT studies revealed extensive interlayer interactions and degenerate frontier orbitals. The FCC-based Russian nesting doll model constitutes a new platform for the study of the size-evolution principles of Ag NCs.
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Herein, a Au-Cu bimetal nanocluster (bi-MNC) with strong emission (13.2% quantum yield) was synthesized and structurally determined. Its structure features a sandwich construction: a ring-like Au7Cu6 kernel is caught in the middle of the two "hat-like" (CuSPNC)3 motifs with four Br atoms, resulting in a formula of [Au7Cu12(dppy)6(TBBT)6Br4]3+ (dppy = PPh2Py, TBBT = SPh- t-Bu). Interestingly, structural analysis shows that the bonding (N-Cu and µ3S-Cu3) is the key factor to endow this bi-MNC with strong emission by locking the intramolecular motion of surface structure, and destroying the intramolecular π···π interactions is designed to boost emission (19.2% vs 13.2%). Furthermore, the structure-luminescence relationship is further explored by theoretical calculation. This work will provide new idea and strategy to prepare bi-MNCs with strong emission.
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Herein, a new basket-like Au26Ag22(TBBT)30 nanocluster (where TBBT = 4- tert-butylthiophenol) was synthesized by a coreduction method. Also, the precise structure was characterized by single-crystal X-ray diffraction and displays a shell-by-shell construction with a Au12@AuAg19 kernel protected by a Au13S26@Ag3S4 surface motif. Interestingly, a handle-like Ag3S4 motif was observed that composes the outermost shell. Except for this Ag3S4 motif, the other motifs are all monomeric "-S-Au-S-" motifs, which are rarely reported in thiolate-capped metal (Au or Ag) nanoclusters with small size ( n < 60). This work will provide new insight into the growth pattern of thiolate-capped metal nanoclusters.
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A new high-performance liquid chromatography (HPLC) method was developed for the enantiomeric resolution of five ß-adrenergic blockers on a Chiralpak IC column (250 mm × 4.6 mm, 5.0 µm particle size) in normal phase mode. The mobile phase used was n-hexane-ethanol-diethylamine in different proportions at the flow rate of 1.0 mL/min with the column temperature of 25°C using a UV detector at 230 nm. The influences of base additives and alcohol modifiers were evaluated and optimized. The maximum resolution values for bevantolol, propranolol carteolol, esmolol, and metoprolol were 4.80, 2.77, 2.09, 2.30, and 1.11, respectively. To gain a better understanding of the interaction between chiral stationary phase and analyte enantiomers, the molecular docking of chiral stationary phase with five pairs of enantiomer was carried out using AutoDock molecular docking technique. By simulation studies, the mechanism of chiral recognition was determined. According to the results, hydrogen bond interactions and π-π interactions were the chief interactions for the chiral recognition.
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Scorpion toxins can kill other animals by inducing paralysis and arrhythmia, which limits the potential applications of these agents in the clinical management of diseases. Antitumor-analgesic peptide (AGAP), purified from Buthus martensii Karsch, has been proved to possess analgesic and antitumor activities. Trp38, a conserved aromatic residue of AGAP, might play an important role in mediating AGAP activities according to the sequence and homology-modeling analyses. Therefore, an AGAP mutant, W38G, was generated, and effects of both AGAP and the mutant W38G were examined by whole-cell patch clamp techniques on the sodium channels hNav1.4 and hNav1.5, which were closely associated with the biotoxicity of skeletal and cardiac muscles, respectively. The data showed that both W38G and AGAP inhibited the peak currents of hNav1.4 and hNav1.5; however, W38G induced a much weaker inhibition of both channels than AGAP. Accordingly, W38G exhibited much less toxic effect on both skeletal and cardiac muscles than AGAP in vivo The analgesic activity of W38G and AGAP were verified in vivo as well, and W38G retained analgesic activity similar to AGAP. Inhibition to both Nav1.7 and Nav1.8 was involved in the analgesic mechanism of AGAP and W38G. These findings indicated that Trp38 was a key amino acid involved in the biotoxicity of AGAP, and the AGAP mutant W38G might be a safer alternative for clinical application because it retains the analgesic efficacy with less toxicity to skeletal and cardiac muscles.