Detalhe da pesquisa
1.
scCorrector: a robust method for integrating multi-study single-cell data.
Brief Bioinform
; 25(2)2024 Jan 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-38271483
2.
Computational prediction and characterization of cell-type-specific and shared binding sites.
Bioinformatics
; 39(1)2023 01 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-36484687
3.
scInterpreter: a knowledge-regularized generative model for interpretably integrating scRNA-seq data.
BMC Bioinformatics
; 24(1): 481, 2023 Dec 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-38104057
4.
Locating transcription factor binding sites by fully convolutional neural network.
Brief Bioinform
; 22(5)2021 09 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-33498086
5.
A survey on deep learning in DNA/RNA motif mining.
Brief Bioinform
; 22(4)2021 07 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-33005921
6.
Base-resolution prediction of transcription factor binding signals by a deep learning framework.
PLoS Comput Biol
; 18(3): e1009941, 2022 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-35263332
7.
DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes.
PLoS Comput Biol
; 18(10): e1010572, 2022 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-36206320
8.
Nucleotide-level prediction of CircRNA-protein binding based on fully convolutional neural network.
Front Genet
; 14: 1283404, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-37867600
9.
Predicting the Sequence Specificities of DNA-Binding Proteins by DNA Fine-Tuned Language Model With Decaying Learning Rates.
IEEE/ACM Trans Comput Biol Bioinform
; 20(1): 616-624, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-35389869
10.
MV-CVIB: a microbiome-based multi-view convolutional variational information bottleneck for predicting metastatic colorectal cancer.
Front Microbiol
; 14: 1238199, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-37675425
11.
DeepTPpred: A Deep Learning Approach With Matrix Factorization for Predicting Therapeutic Peptides by Integrating Length Information.
IEEE J Biomed Health Inform
; 27(9): 4611-4622, 2023 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-37368803
12.
Using Fully Convolutional Network to Locate Transcription Factor Binding Sites Based on DNA Sequence and Conservation Information.
IEEE/ACM Trans Comput Biol Bioinform
; 20(5): 2690-2699, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-36374878
13.
FCNGRU: Locating Transcription Factor Binding Sites by Combing Fully Convolutional Neural Network With Gated Recurrent Unit.
IEEE J Biomed Health Inform
; 26(4): 1883-1890, 2022 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-34613923
14.
Predicting In-Vitro DNA-Protein Binding With a Spatially Aligned Fusion of Sequence and Shape.
IEEE/ACM Trans Comput Biol Bioinform
; 19(6): 3144-3153, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-34882561
15.
Predicting transcription factor binding sites using DNA shape features based on shared hybrid deep learning architecture.
Mol Ther Nucleic Acids
; 24: 154-163, 2021 Jun 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-33767912
16.
Identification of Essential Proteins Based on Improved HITS Algorithm.
Genes (Basel)
; 10(2)2019 02 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-30823614