Evolution of mitochondrial and nuclear genomes in Pennatulacea.

We examine the phylogeny of sea pens using sequences of whole mitochondrial genomes and the nuclear ribosomal cluster generated through low coverage Illumina sequencing. Taxon sampling includes 30 species in 19 genera representing 13 families. Ancestral state reconstruction shows that most sea pen mitochondrial genomes have the ancestral gene order, and that Pennatulacea with diverse gene orders are found in a single clade. The monophyly of Pennatulidae and Protoptilidae are rejected by both the mitochondrial and nuclear dataset, while the mitochondrial dataset further rejects monophyly of Virgulariidae, and the nuclear dataset rejects monophyly of Kophobelemnidae. We show discordance between nuclear ribosomal gene cluster phylogenies and whole mitochondrial genome phylogenies and highlight key Pennatulacea taxa that could be included in cnidarian genome-wide studies to better resolve the sea pen tree of life. We further illustrate how well frequently sequenced markers capture the overall diversity of the mitochondrial genome and the nuclear ribosomal genes in sea pens.

The "Little MonSta" Deep-Sea Benthic, Precision Deployable, Multi-Sensor and Sampling Lander Array.

The "Little MonSta" benthic lander array consists of 8 ROV-deployable (remotely operated vehicle) instrumented lander platforms for monitoring physical and chemical oceanographic properties and particle sampling developed as part of the MMMonKey_Pro program (mapping, modeling, and monitoring key processes and controls in cold-water coral habitats in submarine canyons). The Little MonStas offer flexible solutions to meet the need to monitor marine benthic environments during a historically unprecedented time of climate-driven oceanic change, develop an understanding of meso-scale benthic processes (natural and man-made), and to calibrate geological environmental archives. Equipped with acoustic Doppler current profilers (ADCPs), sediment traps, nylon settlement plates and homing beacons, the compact and upgradable lander platforms can be deployed by ROVs to precise locations in extreme terrains to a water depth of 3000 m. The array allows cluster-monitoring in heterogeneous environments or simultaneous monitoring over wider areas. A proof-of-concept case study was presented from the cold-water coral habitable zone in the upper Porcupine Bank Canyon, where the Little MonStas collected 868.8 h of current speed, direction, temperature, and benthic particulate flux records, as well as 192 particle samples subsequently analyzed for particular organic carbon (POC), lithic sediment, live foraminifera, and microplastics. The potential to upgrade the Little MonStas with additional sensors and acoustic releases offers greater and more flexible operational capabilities.

Microplastics and cellulosic microparticles in North Atlantic deep waters and in the cold-water coral Lophelia pertusa.

This study explores microplastic and cellulosic microparticle occurrences in the NE Atlantic, focusing on the Porcupine Bank Canyon and Porcupine Seabight. Water samples from depths ranging between 605 and 2126 m and Lophelia pertusa coral samples from 950 m depth were analysed. Microparticles were detected in deep-water habitats, with concentrations varying from 2.33 to 9.67 particles L-1 in the Porcupine Bank Canyon, notably lower at greater depths. This challenges the assumption of deeper habitats solely acting as microplastic sinks. We also found evidence of microparticle adsorption and ingestion by L. pertusa. The presence of microparticles in cold-water corals underscores their vulnerability to pollutants. Furthermore, the dominance of rayon microparticles in both water and coral samples raises questions about marine pollution sources, potentially linked to terrestrial origins. This research emphasises the critical need for comprehensive exploration and conservation efforts in deep-sea environments, especially to protect vital ecosystems like L. pertusa reefs.

Influence of benthic currents on cold-water coral habitats: a combined benthic monitoring and 3D photogrammetric investigation.

Strong currents are a key component of benthic habitats by supplying food and nutrients to filter-feeding organisms such as cold-water corals. Although field measurements show that cold-water coral habitats exist in areas of elevated bottom currents, flume studies show that cold-water corals feed more effectively at lower flow speeds. This research aims to explore this disconnect in situ by utilising high spatial resolution ROV photogrammetric data coupled with high temporal resolution in situ acoustic doppler current profile measurements at seven study sites within the upper Porcupine Bank Canyon (uPBC), NE Atlantic. Object-based image analysis of photogrammetric data show that coral habitats vary considerably within the upper canyon. Although there is a regional hydrodynamic trend across the uPBC, this variation is likely driven locally by topographic steering. Although live coral tends not to face directly into the prevailing current direction, preferring lower local flows speeds, they can tolerate exposure to high-flow speeds of up to 114 cm s-1, the highest recorded in a Desmophyllum pertusum habitat. Not only do these high flow speeds supply food and nutrients, they may also help contribute to coral rubble production through physical erosion. These results can be incorporated into simulations of future deep-water habitat response to changing environmental conditions while extending the upper current speed threshold for cold-water corals.

High resolution mapping of a cold water coral mound.

Cold-water coral (CWC) mounds are biogenic, long-lived morphostructures composed primarily by scleractinian CWC's and hemipelagic sediments that form complex deep-sea microhabitats found globally but specifically along the European-Atlantic margin. In this work, high-resolution mapping was applied to identify individual organismal distribution and zonation across a CWC Piddington Mound within the Porcupine Seabight, Ireland Margin. Marine Object-Based Image Analysis (MOBIA) and different machine learning classification methods (decision tree, logistic regression, and deep neural network) were applied to a high-resolution (2 mm) reef-scale video mosaic and ROV-mounted multibeam data in order to provide new insights into the spatial organization of coral frameworks and environmental factors on CWC mounds. The results showed an accurate quantification of the amount of Coral Framework (14.5%; ~2% live and ~12.5% dead) and sponges (~3.5%) with heterogeneous distribution, restricted to a certain portion of the mound. This is the first object level quantification of live and dead coral framework facies and individual sponges across an entire CWC mound. This approach has application for habitat and conservation studies, provides a quantification tool for carbon budget assessments and can provide a baseline to assess CWC mound change. The approach can also be modified for application in other habitats.

Novel diversity in mitochondrial genomes of deep-sea Pennatulacea (Cnidaria: Anthozoa: Octocorallia).

We present the first documented complete mitogenomes of deep-sea Pennatulacea, representing nine genera and eight families. These include one species each of the deep-sea genera Funiculina, Halipteris, Protoptilum and Distichoptilum, four species each of Umbellula and Pennatula, three species of Kophobelemnon and two species of Anthoptilum, as well as one species of the epi- and mesobenthic genus Virgularia. Seventeen circular genomes ranged from 18,513 bp (Halipteris cf. finmarchica) to 19,171 bp (Distichoptilum gracile) and contained all genes standard to octocoral mitochondrial genomes (14 protein-coding genes, two ribosomal RNA genes and one transfer RNA). We found at least three different gene orders in Pennatulacea: the ancestral gene order, the gene order found in bamboo corals (Family Isididae), and a novel gene order. The mitogenome of one species of Umbellula has a bipartite genome (∼13 kbp and ∼5 kbp), with good evidence that both parts are circular.

Reefs of the deep: the biology and geology of cold-water coral ecosystems.

Coral reefs are generally associated with shallow tropical seas; however, recent deep-ocean exploration using advanced acoustics and submersibles has revealed unexpectedly widespread and diverse coral ecosystems in deep waters on continental shelves, slopes, seamounts, and ridge systems around the world. Advances reviewed here include the use of corals as paleoclimatic archives and their biogeological functioning, biodiversity, and biogeography. Threats to these fragile, long-lived, and rich ecosystems are mounting: The impacts of deep-water trawling are already widespread, and effects of ocean acidification are potentially devastating.