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1.
J Exp Bot ; 75(3): 1004-1015, 2024 Feb 02.
Artigo em Inglês | MEDLINE | ID: mdl-37819624

RESUMO

Phenotypic plasticity is an important topic in biology and evolution. However, how to generate broadly applicable insights from individual studies remains a challenge. Here, with flowering time observed from a large geographical region for sorghum and rice genetic populations, we examine the consistency of parameter estimation for reaction norms of genotypes across different subsets of environments and searched for potential strategies to inform the study design. Both sample size and environmental mean range of the subset affected the consistency. The subset with either a large range of environmental mean or a large sample size resulted in genetic parameters consistent with the overall pattern. Furthermore, high accuracy through genomic prediction was obtained for reaction norm parameters of untested genotypes using models built from tested genotypes under the subsets of environments with either a large range or a large sample size. With 1428 and 1674 simulated settings, our analyses suggested that the distribution of environmental index values of a site should be considered in designing experiments. Overall, we showed that environmental context was critical, and considerations should be given to better cover the intended range of the environmental variable. Our findings have implications for the genetic architecture of complex traits, plant-environment interaction, and climate adaptation.


Assuntos
Oryza , Sorghum , Fenótipo , Oryza/genética , Sorghum/genética , Genótipo , Adaptação Fisiológica
2.
J Environ Sci (China) ; 139: 150-159, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38105043

RESUMO

Dichloromethane (DCM) has been listed as a toxic and harmful water pollutant, and its removal needs attention. Microbial electrolysis cells (MECs) are viewed as a promising alternative for pollutant removal, which can be strengthened from two aspects: microbial inoculation and acclimation. In this study, the MEC for DCM degradation was inoculated with the active sludge enhanced by Methylobacterium rhodesianum H13 (strain H13) and then acclimated in the form of a microbial fuel cell (MFC). Both the introduction of strain H13 and the initiation in MFC form significantly promoted DCM degradation. The degradation kinetics were fitted by the Haldane model, with Vmax, Kh, Ki and vmax values of 103.2 mg/L/hr, 97.8 mg/L, 268.3 mg/L and 44.7 mg/L/hr/cm2, respectively. The cyclic voltammogram implies that DCM redox reactions became easier with the setup of MEC, and the electrochemical impedance spectrogram shows that the acclimated and enriched microbes reduced the charge transfer resistance from the electrode to the electrolyte. In the biofilm, the dominant genera shifted from Geobacter to Hyphomicrobium in acclimation stages. Moreover, Methylobacterium played an increasingly important role. DCM metabolism mainly occurred through the hydrolytic glutathione S-transferase pathway, given that the gene dcmA was identified rather than the dhlA and P450/MO. The exogenous electrons facilitated the reduction of GSSG, directly or indirectly accelerating the GSH-catalyzed dehalogenation. This study provides support for the construction of an efficient and stable MEC for DCM removal in water environment.


Assuntos
Fontes de Energia Bioelétrica , Microbiota , Cloreto de Metileno/metabolismo , Eletrólise , Cinética , Eletrodos
3.
Genome Res ; 30(5): 673-683, 2020 05.
Artigo em Inglês | MEDLINE | ID: mdl-32299830

RESUMO

The phenotypic variation of living organisms is shaped by genetics, environment, and their interaction. Understanding phenotypic plasticity under natural conditions is hindered by the apparently complex environment and the interacting genes and pathways. Herein, we report findings from the dissection of rice flowering-time plasticity in a genetic mapping population grown in natural long-day field environments. Genetic loci harboring four genes originally discovered for their photoperiodic effects (Hd1, Hd2, Hd5, and Hd6) were found to differentially respond to temperature at the early growth stage to jointly determine flowering time. The effects of these plasticity genes were revealed with multiple reaction norms along the temperature gradient. By coupling genomic selection and the environmental index, accurate performance predictions were obtained. Next, we examined the allelic variation in the four flowering-time genes across the diverse accessions from the 3000 Rice Genomes Project and constructed haplotypes at both individual-gene and multigene levels. The geographic distribution of haplotypes revealed their preferential adaptation to different temperature zones. Regions with lower temperatures were dominated by haplotypes sensitive to temperature changes, whereas the equatorial region had a majority of haplotypes that are less responsive to temperature. By integrating knowledge from genomics, gene cloning and functional characterization, and environment quantification, we propose a conceptual model with multiple levels of reaction norms to help bridge the gaps among individual gene discovery, field-level phenotypic plasticity, and genomic diversity and adaptation.


Assuntos
Flores/genética , Oryza/genética , Adaptação Fisiológica , Flores/crescimento & desenvolvimento , Genes de Plantas , Haplótipos , Oryza/crescimento & desenvolvimento , Fenótipo , Análise de Regressão , Temperatura
4.
PLoS Pathog ; 17(3): e1009428, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-33720995

RESUMO

EDP-938 is a novel non-fusion replication inhibitor of respiratory syncytial virus (RSV). It is highly active against all RSV-A and B laboratory strains and clinical isolates tested in vitro in various cell lines and assays, with half-maximal effective concentrations (EC50s) of 21, 23 and 64 nM against Long (A), M37 (A) and VR-955 (B) strains, respectively, in the primary human bronchial epithelial cells (HBECs). EDP-938 inhibits RSV at a post-entry replication step of the viral life cycle as confirmed by time-of-addition study, and the activity appears to be mediated by viral nucleoprotein (N). In vitro resistance studies suggest that EDP-938 presents a higher barrier to resistance compared to viral fusion or non-nucleoside L polymerase inhibitors with no cross-resistance observed. Combinations of EDP-938 with other classes of RSV inhibitors lead to synergistic antiviral activity in vitro. Finally, EDP-938 has also been shown to be efficacious in vivo in a non-human primate model of RSV infection.


Assuntos
Antivirais/farmacologia , Infecções por Vírus Respiratório Sincicial , Animais , Linhagem Celular , Chlorocebus aethiops , Modelos Animais de Doenças , Células Epiteliais/efeitos dos fármacos , Células Epiteliais/virologia , Humanos , Mucosa Respiratória/efeitos dos fármacos , Mucosa Respiratória/virologia , Vírus Sincicial Respiratório Humano/efeitos dos fármacos
5.
Appl Environ Microbiol ; 89(5): e0043323, 2023 05 31.
Artigo em Inglês | MEDLINE | ID: mdl-37098893

RESUMO

Bacteria employ multiple transcriptional regulators to orchestrate cellular responses to adapt to constantly varying environments. The bacterial biodegradation of polycyclic aromatic hydrocarbons (PAHs) has been extensively described, and yet, the PAH-related transcriptional regulators remain elusive. In this report, we identified an FadR-type transcriptional regulator that controls phenanthrene biodegradation in Croceicoccus naphthovorans strain PQ-2. The expression of fadR in C. naphthovorans PQ-2 was induced by phenanthrene, and its deletion significantly impaired both the biodegradation of phenanthrene and the synthesis of acyl-homoserine lactones (AHLs). In the fadR deletion strain, the biodegradation of phenanthrene could be recovered by supplying either AHLs or fatty acids. Notably, FadR simultaneously activated the fatty acid biosynthesis pathway and repressed the fatty acid degradation pathway. As intracellular AHLs are synthesized with fatty acids as substrates, boosting the fatty acid supply could enhance AHL synthesis. Collectively, these findings demonstrate that FadR in C. naphthovorans PQ-2 positively regulates PAH biodegradation by controlling the formation of AHLs, which is mediated by the metabolism of fatty acids. IMPORTANCE Master transcriptional regulation of carbon catabolites is extremely important for the survival of bacteria that face changes in carbon sources. Polycyclic aromatic hydrocarbons (PAHs) can be utilized as carbon sources by some bacteria. FadR is a well-known transcriptional regulator involved in fatty acid metabolism; however, the connection between FadR regulation and PAH utilization in bacteria remains unknown. This study revealed that a FadR-type regulator in Croceicoccus naphthovorans PQ-2 stimulated PAH biodegradation by controlling the biosynthesis of the acyl-homoserine lactone quorum-sensing signals that belong to fatty acid-derived compounds. These results provide a unique perspective for understanding bacterial adaptation to PAH-containing environments.


Assuntos
Fenantrenos , Hidrocarbonetos Policíclicos Aromáticos , Percepção de Quorum , Hidrocarbonetos Policíclicos Aromáticos/metabolismo , Biodegradação Ambiental , Bactérias/metabolismo , Ácidos Graxos
6.
Plant Cell ; 32(1): 152-165, 2020 01.
Artigo em Inglês | MEDLINE | ID: mdl-31690654

RESUMO

Stalk lodging, which is generally determined by stalk strength, results in considerable yield loss and has become a primary threat to maize (Zea mays) yield under high-density planting. However, the molecular genetic basis of maize stalk strength remains unclear, and improvement methods remain inefficient. Here, we combined map-based cloning and association mapping and identified the gene stiff1 underlying a major quantitative trait locus for stalk strength in maize. A 27.2-kb transposable element insertion was present in the promoter of the stiff1 gene, which encodes an F-box domain protein. This transposable element insertion repressed the transcription of stiff1, leading to the increased cellulose and lignin contents in the cell wall and consequently greater stalk strength. Furthermore, a precisely edited allele of stiff1 generated through the CRISPR/Cas9 system resulted in plants with a stronger stalk than the unedited control. Nucleotide diversity analysis revealed that the promoter of stiff1 was under strong selection in the maize stiff-stalk group. Our cloning of stiff1 reveals a case in which a transposable element played an important role in maize improvement. The identification of stiff1 and our edited stiff1 allele pave the way for efficient improvement of maize stalk strength.


Assuntos
Elementos de DNA Transponíveis/genética , Regiões Promotoras Genéticas , Zea mays/genética , Alelos , Sistemas CRISPR-Cas , Parede Celular/metabolismo , Mapeamento Cromossômico , Genes de Plantas , Lignina/metabolismo , Fenótipo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Locos de Características Quantitativas , Análise de Sequência , Transformação Genética
7.
Environ Res ; 238(Pt 2): 117214, 2023 12 01.
Artigo em Inglês | MEDLINE | ID: mdl-37783332

RESUMO

Biodesulfurization is a mature technology, but obtaining biosulfur (S0) that can be easily settled naturally is still a challenge. Increasing the sulfide load is one of the known methods to obtain better settling of S0. However, the inhibitory effect of high levels of sulfide on microbes has also not been well studied. We constructed a high loading sulfide (1.55-10.86 kg S/m3/d) biological removal system. 100% sulfide removal and 0.56-2.53 kg S/m3/d S0 (7.0 ± 0.09-16.4 ± 0.25 µm) recovery were achieved at loads of 1.55-7.75 kg S/m3/d. Under the same load, S0 in the reflux sedimentation tank, which produced larger S0 particles (24.2 ± 0.73-53.8 ± 0.70 µm), increased the natural settling capacity and 45% recovery. For high level sulfide inhibitory effect, we used metagenomics and metatranscriptomics analyses. The increased sulfide load significantly inhibited the expression of flavin cytochrome c sulfide dehydrogenase subunit B (fccB) (Decreased from 615 ± 75 to 30 ± 5 TPM). At this time sulfide quinone reductase (SQR) (324 ± 185-1197 ± 51 TPM) was mainly responsible for sulfide oxidation and S0 production. When the sulfide load reached 2800 mg S/L, the SQR (730 ± 100 TPM) was also suppressed. This resulted in the accumulation of sulfide, causing suppression of carbon sequestration genes (Decreased from 3437 ± 842 to 665 ± 175 TPM). Other inhibitory effects included inhibition of microbial respiration, production of reactive oxygen species, and DNA damage. More sulfide-oxidizing bacteria (SOB) and newly identified potential SOB (99.1%) showed some activity (77.6%) upon sulfide accumulation. The main microorganisms in the sulfide accumulation environment were Thiomicrospiracea and Burkholderiaceae, whose sulfide oxidation capacity and respiration were not significantly inhibited. This study provides a new approach to enhance the natural sedimentation of S0 and describes new microbial mechanisms for the inhibitory effects of sulfide.


Assuntos
Sulfeto de Hidrogênio , Sulfetos , Oxirredução , Bactérias/metabolismo , Reatores Biológicos
8.
J Environ Manage ; 345: 118571, 2023 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-37421725

RESUMO

Mechanochemical (MC) remediation with zero-valent iron (ZVI) as co-milling agent enables the non-combustion and solvent-free disposal of solid halogenated organic pollutants (HOPs) via solid-phase reaction, but suffers from incomplete dechlorination (especially for less chlorinated chemicals). Herein, a reduction-oxidation coupling strategy using ZVI and peroxydisulfate as synergistic (ZVI-PDS) co-milling agents was investigated, with 2,4-dichlorophenol (2,4-DCP) as probe contaminant. By revisiting the MC destruction process of 2,4-DCP by ZVI, the contribution of both reductive and oxidative routes is confirmed, and the inefficient •OH generation is addressed. With ball-to-material and reagent-to-pollutant mass ratios of 30:1 and 13:1, respectively, ZVI-PDS achieves higher dechlorination ratio (86.8%) for 2,4-DCP within 5 h, outcompeting sole ZVI (40.3%) or PDS (33.9%), due to the accumulation of numerous SO4•-. As suggested by a two-compartment kinetic model, the optimal ZVI/PDS molar ratio of 4:1 is determined, which balances the relative contribution of reductive/oxidative routes and leads to a maximum mineralization efficiency of 77.4%. The analysis on product distribution verifies the generation of dechlorinated, ring-opening and minor coupling products (with low acute toxicity). This work validates the necessity to couple reduction with oxidation in MC destruction for solid HOPs, and may provide information on reagent formulation.


Assuntos
Poluentes Ambientais , Poluentes Químicos da Água , Ferro/análise , Poluentes Ambientais/análise , Oxirredução , Poluentes Químicos da Água/análise
9.
Genome Res ; 29(12): 1962-1973, 2019 12.
Artigo em Inglês | MEDLINE | ID: mdl-31744902

RESUMO

The shoot apical meristem (SAM) orchestrates the balance between stem cell proliferation and organ initiation essential for postembryonic shoot growth. Meristems show a striking diversity in shape and size. How this morphological diversity relates to variation in plant architecture and the molecular circuitries driving it are unclear. By generating a high-resolution gene expression atlas of the vegetative maize shoot apex, we show here that distinct sets of genes govern the regulation and identity of stem cells in maize versus Arabidopsis. Cell identities in the maize SAM reflect the combinatorial activity of transcription factors (TFs) that drive the preferential, differential expression of individual members within gene families functioning in a plethora of cellular processes. Subfunctionalization thus emerges as a fundamental feature underlying cell identity. Moreover, we show that adult plant characters are, to a significant degree, regulated by gene circuitries acting in the SAM, with natural variation modulating agronomically important architectural traits enriched specifically near dynamically expressed SAM genes and the TFs that regulate them. Besides unique mechanisms of maize stem cell regulation, our atlas thus identifies key new targets for crop improvement.


Assuntos
Arabidopsis/genética , Bases de Dados de Ácidos Nucleicos , Regulação da Expressão Gênica de Plantas/fisiologia , Genes de Plantas , Meristema/genética , Arabidopsis/metabolismo , Meristema/metabolismo
10.
New Phytol ; 233(4): 1768-1779, 2022 02.
Artigo em Inglês | MEDLINE | ID: mdl-34870847

RESUMO

Phenotypic plasticity is observed widely in plants and often studied with reaction norms for adult plant or end-of-season traits. Uncovering genetic, environmental and developmental patterns behind the observed phenotypic variation under natural field conditions is needed. Using a sorghum (Sorghum bicolor) genetic population evaluated for plant height in seven natural field conditions, we investigated the major pattern that differentiated these environments. We then examined the physiological relevance of the identified environmental index by investigating the developmental trajectory of the population with multistage height measurements in four additional environments and conducting crop growth modelling. We found that diurnal temperature range (DTR) during the rapid growth period of sorghum development was an effective environmental index. Three genetic loci (Dw1, Dw3 and qHT7.1) were consistently detected for individual environments, reaction-norm parameters across environments and growth-curve parameters through the season. Their genetic effects changed dynamically along the environmental gradient and the developmental stage. A conceptual model with three-dimensional reaction norms was proposed to showcase the interconnecting components: genotype, environment and development. Beyond genomic and environmental analyses, further integration of development and physiology at the whole-plant and molecular levels into complex trait dissection would enhance our understanding of mechanisms underlying phenotypic variation.


Assuntos
Locos de Características Quantitativas , Sorghum , Adaptação Fisiológica , Genótipo , Fenótipo , Locos de Características Quantitativas/genética , Sorghum/genética , Temperatura
11.
Nano Lett ; 21(13): 5805-5812, 2021 07 14.
Artigo em Inglês | MEDLINE | ID: mdl-34128686

RESUMO

Metal-organic frameworks (MOFs) have been proposed as emerging fillers for composite polymer electrolytes (CPEs). However, MOF particles are usually served as passive fillers that yield limited ionic conductivity improvement. Building continuous MOF reinforcements and exploiting their active roles remain challenging. Here we demonstrate the feasibility of engineering fast Li+ conduction within MOF on molecule conception. Two-dimensional Cu(BDC) MOF is selected as an active filler due to its sufficient accessible open metal sites for perchlorate anion anchoring to release free Li+, verified by theoretical calculations and measurements. A novel Cu(BDC)-scaffold-reinforced CPE is developed via in situ growth of MOF, which provides fast Li+ channels inside MOF and continuous Li+ paths along the MOF/polymer interface for high Li+ conductivity (ambient 0.24 mS cm-1) and enables high mechanical strength. Stable cycling is achieved in solid-state Li-NCM811 full cell using the MOF-reinforced CPE. This molecule-basis Li+ conduction strategy brings new ideas for designing advanced CPEs.


Assuntos
Estruturas Metalorgânicas , Eletrólitos , Íons , Lítio , Polímeros
12.
Environ Sci Technol ; 55(6): 3956-3966, 2021 03 16.
Artigo em Inglês | MEDLINE | ID: mdl-33629580

RESUMO

Several typical active substances (•NO, •NO2, H2O2, O3, •OH, and O2-•), directly or indirectly play dominant roles during dielectric barrier discharge (DBD) reaction. This study measured these active substances and removed them by using radical scavengers, such as catalase, superoxide dismutase, carboxy-PTIO (c-PTIO), tert-butanol (TBA), and MnO2 in different reaction atmospheres (air, N2, and O2). The mechanism for chlorobenzene (CB) removal by plasma in air atmosphere was also investigated. The production of O═NOO-• generated by •NO took around 75% of the total production of O═NOO-•. Removing •NO increased the O3 amount by about 80% likely because of the mutual inhibition between O3 and reactive nitrogen species in or out of the discharge area. The quantitative comparison of •OH and H2O2 revealed that the formation of •OH was 3.06-4.65 times that of H2O2 in these reaction atmospheres. Calculation results showed that approximately 1.61% of H2O was used for O3 generation. Ionization patterns affected the form of solid deposits during the removal of CB in N2 and O2 atmospheres caused by Penning ionization and thermal radiation tendencies, respectively. Correlation analysis results suggested the macroscopic synergistic or inhibitory effects happened among these active substances. A zero-dimensional reaction kinetics model was adopted to analyze the reactions during the formation of active substances in DBD, and the results showed good consistency with experiments. The interactions of each active substance were clarified. Finally, a response surface method model was developed to predict CB removal by the DBD plasma process. Stepwise regression analysis results showed that CB removal was affected by the contents of different active substances in air, N2 atmosphere, and O2 atmosphere, respectively: O2-•, •OH, and O3; H2O2, O═NOO-•, and O3; •OH and O3.


Assuntos
Peróxido de Hidrogênio , Compostos de Manganês , Clorobenzenos , Cinética , Óxidos
13.
Proc Natl Acad Sci U S A ; 115(26): 6679-6684, 2018 06 26.
Artigo em Inglês | MEDLINE | ID: mdl-29891664

RESUMO

Observed phenotypic variation in living organisms is shaped by genomes, environment, and their interactions. Flowering time under natural conditions can showcase the diverse outcome of the gene-environment interplay. However, identifying hidden patterns and specific factors underlying phenotypic plasticity under natural field conditions remains challenging. With a genetic population showing dynamic changes in flowering time, here we show that the integrated analyses of genomic responses to diverse environments is powerful to reveal the underlying genetic architecture. Specifically, the effect continuum of individual genes (Ma1 , Ma6 , FT, and ELF3) was found to vary in size and in direction along an environmental gradient that was quantified by photothermal time, a combination of two environmental factors (photoperiod and temperature). Gene-gene interaction was also contributing to the observed phenotypic plasticity. With the identified environmental index to quantitatively connect environments, a systematic genome-wide performance prediction framework was established through either genotype-specific reaction-norm parameters or genome-wide marker-effect continua. These parallel genome-wide approaches were demonstrated for in-season and on-target performance prediction by simultaneously exploiting genomics, environment profiling, and performance information. Improved understanding of mechanisms for phenotypic plasticity enables a concerted exploration that turns challenge into opportunity.


Assuntos
Interação Gene-Ambiente , Fenótipo , Sorghum/genética , Epistasia Genética , Flores/crescimento & desenvolvimento , Estudos de Associação Genética , Endogamia , Meio-Oeste dos Estados Unidos , Fotoperíodo , Melhoramento Vegetal , Polimorfismo de Nucleotídeo Único , Porto Rico , Estações do Ano , Sorghum/crescimento & desenvolvimento , Temperatura
15.
Nano Lett ; 20(10): 7397-7404, 2020 Oct 14.
Artigo em Inglês | MEDLINE | ID: mdl-32903000

RESUMO

Solid polymer electrolytes for safe lithium batteries are in general flexible and easy to process, yet they have limited ionic conductivity and low mechanical strength. Introducing nano/microsized fillers into polymer electrolytes has been proven effective to address these issues, while formation of a percolated network of fillers for efficient Li+ conduction remains challenging. In this work, composite polymer electrolyte with 3D cellulose/ceramic networks is successfully developed using natural cellulose fibers and Li+-conducting ceramic nanoparticles. Monodisperse ceramic nanofillers first form interconnected networks driven by the self-assembly of hybrid cellulose fibers. The hierarchical cellulose skeleton provides spatial guidance for ceramic fillers and firmly supports the whole structure. After polymer electrolyte infusion, the resultant hybrid electrolyte affords both 3D continuous Li+ pathways for high Li+ conductivity and sufficient mechanical strength for dendrite suppression. This cellulose-confined particle percolation approach enables efficient and strong solid electrolytes for lithium batteries.

16.
Plant Biotechnol J ; 18(12): 2456-2465, 2020 12.
Artigo em Inglês | MEDLINE | ID: mdl-32452105

RESUMO

Effective evaluation of millions of crop genetic stocks is an essential component of exploiting genetic diversity to achieve global food security. By leveraging genomics and data analytics, genomic prediction is a promising strategy to efficiently explore the potential of these gene banks by starting with phenotyping a small designed subset. Reliable genomic predictions have enhanced selection of many macroscopic phenotypes in plants and animals. However, the use of genomicprediction strategies for analysis of microscopic phenotypes is limited. Here, we exploited the power of genomic prediction for eight maize traits related to the shoot apical meristem (SAM), the microscopic stem cell niche that generates all the above-ground organs of the plant. With 435 713 genomewide single-nucleotide polymorphisms (SNPs), we predicted SAM morphology traits for 2687 diverse maize inbreds based on a model trained from 369 inbreds. An empirical validation experiment with 488 inbreds obtained a prediction accuracy of 0.37-0.57 across eight traits. In addition, we show that a significantly higher prediction accuracy was achieved by leveraging the U value (upper bound for reliability) that quantifies the genomic relationships of the validation set with the training set. Our findings suggest that double selection considering both prediction and reliability can be implemented in choosing selection candidates for phenotyping when exploring new diversity is desired. In this case, individuals with less extreme predicted values and moderate reliability values can be considered. Our study expands the turbocharging gene banks via genomic prediction from the macrophenotypes into the microphenotypic space.


Assuntos
Genômica , Zea mays , Animais , Genótipo , Modelos Genéticos , Fenótipo , Polimorfismo de Nucleotídeo Único , Reprodutibilidade dos Testes , Seleção Genética
17.
Plant J ; 93(6): 1032-1044, 2018 03.
Artigo em Inglês | MEDLINE | ID: mdl-29364547

RESUMO

The maize nodal root system plays a crucial role in the development of the aboveground plant and determines the yield via the uptake of water and nutrients in the field. However, the genetic architecture of the maize nodal root system is not well understood, and it has become the 'dark matter' of maize genetics. Here, a large teosinte-maize population was analyzed, and high-resolution mapping revealed that 62 out of 133 quantitative trait loci (QTLs), accounting for approximately half of the total genetic variation in nodal root number, were derived from QTLs for flowering time, which was further validated through a transgenic analysis and a genome-wide association study. However, only 16% of the total genetic variation in nodal root number was derived from QTLs for plant height. These results gave a hint that flowering time played a key role in shaping nodal root number via indirect selection during maize domestication. Our results also supported that more aerial nodal roots and fewer crown roots might be favored in temperate maize, and this root architecture might efficiently improve root-lodging resistance and the ability to take up deep water and nitrogen under dense planting.


Assuntos
Genes de Plantas/genética , Raízes de Plantas/genética , Locos de Características Quantitativas/genética , Zea mays/genética , Mapeamento Cromossômico , Domesticação , Flores/genética , Flores/crescimento & desenvolvimento , Variação Genética , Estudo de Associação Genômica Ampla , Fenótipo , Raízes de Plantas/crescimento & desenvolvimento , Seleção Genética , Fatores de Tempo , Zea mays/crescimento & desenvolvimento
18.
Mol Biol Evol ; 35(11): 2762-2772, 2018 11 01.
Artigo em Inglês | MEDLINE | ID: mdl-30184112

RESUMO

Meiotic recombination is an evolutionary force that generates new genetic diversity upon which selection can act. Whereas multiple studies have assessed genome-wide patterns of recombination and specific cases of intragenic recombination, few studies have assessed intragenic recombination genome-wide in higher eukaryotes. We identified recombination events within or near genes in a population of maize recombinant inbred lines (RILs) using RNA-sequencing data. Our results are consistent with case studies that have shown that intragenic crossovers cluster at the 5' ends of some genes. Further, we identified cases of intragenic crossovers that generate transgressive transcript accumulation patterns, that is, recombinant alleles displayed higher or lower levels of expression than did nonrecombinant alleles in any of ∼100 RILs, implicating intragenic recombination in the generation of new variants upon which selection can act. Thousands of apparent gene conversion events were identified, allowing us to estimate the genome-wide rate of gene conversion at SNP sites (4.9 × 10-5). The density of syntenic genes (i.e., those conserved at the same genomic locations since the divergence of maize and sorghum) exhibits a substantial correlation with crossover frequency, whereas the density of nonsyntenic genes (i.e., those which have transposed or been lost subsequent to the divergence of maize and sorghum) shows little correlation, suggesting that crossovers occur at higher rates in syntenic genes than in nonsyntenic genes. Increased rates of crossovers in syntenic genes could be either a consequence of the evolutionary conservation of synteny or a biological process that helps to maintain synteny.


Assuntos
Alelos , Troca Genética , Meiose , Zea mays/genética , Expressão Gênica , Sintenia , Zea mays/metabolismo
19.
Small ; 15(44): e1902729, 2019 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-31497933

RESUMO

Solid-state electrolytes have recently attracted significant attention toward safe and high-energy lithium chemistries. In particular, polyethylene oxide (PEO)-based composite polymer electrolytes (CPEs) have shown outstanding mechanical flexibility and manufacturing feasibility. However, their limited ionic conductivity, poor electrochemical stability, and insufficient mechanical strength are yet to be addressed. In this work, a novel CPE supported by Li+ -containing SiO2 nanofibers is developed. The nanofibers are obtained via sol-gel electrospinning, during which lithium sulfate is in situ introduced into the nanofibers. The uniform doping of Li2 SO4 in SiO2 nanofibers increases the Li+ conductivity of SiO2 , generates mesopores on the surface of SiO2 nanofibers, and improves the wettability between SiO2 and PEO. As a result, the obtained SiO2 /Li2 SO4 /PEO CPE yields high Li+ conductivity (1.3 × 10-4 S cm-1 at 60 °C, ≈4.9 times the Li2 SO4 -free CPE) and electrochemical stability. Furthermore, the all-solid-state LiFePO4 -Li full cell demonstrates stable cycling with high capacities (over 80 mAh g-1 , 50 cycles at C/2 at 60 °C). The Li+ -containing mesoporous SiO2 nanofibers show great potential as the filler for CPEs. Similar methods can be used to incorporate Li salts into other filler materials for CPEs.

20.
Theor Appl Genet ; 132(3): 817-849, 2019 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-30798332

RESUMO

Maize has for many decades been both one of the most important crops worldwide and one of the primary genetic model organisms. More recently, maize breeding has been impacted by rapid technological advances in sequencing and genotyping technology, transformation including genome editing, doubled haploid technology, parallelled by progress in data sciences and the development of novel breeding approaches utilizing genomic information. Herein, we report on past, current and future developments relevant for maize breeding with regard to (1) genome analysis, (2) germplasm diversity characterization and utilization, (3) manipulation of genetic diversity by transformation and genome editing, (4) inbred line development and hybrid seed production, (5) understanding and prediction of hybrid performance, (6) breeding methodology and (7) synthesis of opportunities and challenges for future maize breeding.


Assuntos
Melhoramento Vegetal/métodos , Zea mays/genética , Mapeamento Cromossômico , Variação Genética , Genoma de Planta , Genômica
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