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1.
Nat Immunol ; 25(9): 1565-1579, 2024 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-39103576

RESUMO

Nucleophosmin 1 (NPM1) is commonly mutated in myelodysplastic syndrome (MDS) and acute myeloid leukemia. Concurrent inflammatory bowel diseases (IBD) and MDS are common, indicating a close relationship between IBD and MDS. Here we examined the function of NPM1 in IBD and colitis-associated colorectal cancer (CAC). NPM1 expression was reduced in patients with IBD. Npm1+/- mice were more susceptible to acute colitis and experimentally induced CAC than littermate controls. Npm1 deficiency impaired the function of interleukin-22 (IL-22)-producing group three innate lymphoid cells (ILC3s). Mice lacking Npm1 in ILC3s exhibited decreased IL-22 production and accelerated development of colitis. NPM1 was important for mitochondrial biogenesis and metabolism by oxidative phosphorylation in ILC3s. Further experiments revealed that NPM1 cooperates with p65 to promote mitochondrial transcription factor A (TFAM) transcription in ILC3s. Overexpression of Npm1 in mice enhanced ILC3 function and reduced the severity of dextran sulfate sodium-induced colitis. Thus, our findings indicate that NPM1 in ILC3s protects against IBD by regulating mitochondrial metabolism through a p65-TFAM axis.


Assuntos
Colite , Imunidade nas Mucosas , Camundongos Knockout , Mitocôndrias , Proteínas Nucleares , Nucleofosmina , Fosforilação Oxidativa , Animais , Mitocôndrias/metabolismo , Camundongos , Proteínas Nucleares/metabolismo , Proteínas Nucleares/genética , Humanos , Colite/imunologia , Colite/metabolismo , Linfócitos/imunologia , Linfócitos/metabolismo , Camundongos Endogâmicos C57BL , Neoplasias Colorretais/imunologia , Neoplasias Colorretais/metabolismo , Interleucina 22 , Imunidade Inata , Doenças Inflamatórias Intestinais/imunologia , Doenças Inflamatórias Intestinais/metabolismo , Sulfato de Dextrana , Masculino , Interleucinas/metabolismo , Interleucinas/genética , Interleucinas/imunologia , Feminino
2.
Proc Natl Acad Sci U S A ; 121(26): e2402200121, 2024 Jun 25.
Artigo em Inglês | MEDLINE | ID: mdl-38885384

RESUMO

Advancing our understanding of brain function and developing treatments for neurological diseases hinge on the ability to modulate neuronal groups in specific brain areas without invasive techniques. Here, we introduce Airy-beam holographic sonogenetics (AhSonogenetics) as an implant-free, cell type-specific, spatially precise, and flexible neuromodulation approach in freely moving mice. AhSonogenetics utilizes wearable ultrasound devices manufactured using 3D-printed Airy-beam holographic metasurfaces. These devices are designed to manipulate neurons genetically engineered to express ultrasound-sensitive ion channels, enabling precise modulation of specific neuronal populations. By dynamically steering the focus of Airy beams through ultrasound frequency tuning, AhSonogenetics is capable of modulating neuronal populations within specific subregions of the striatum. One notable feature of AhSonogenetics is its ability to flexibly stimulate either the left or right striatum in a single mouse. This flexibility is achieved by simply switching the acoustic metasurface in the wearable ultrasound device, eliminating the need for multiple implants or interventions. AhSonogentocs also integrates seamlessly with in vivo calcium recording via fiber photometry, showcasing its compatibility with optical modalities without cross talk. Moreover, AhSonogenetics can generate double foci for bilateral stimulation and alleviate motor deficits in Parkinson's disease mice. This advancement is significant since many neurological disorders, including Parkinson's disease, involve dysfunction in multiple brain regions. By enabling precise and flexible cell type-specific neuromodulation without invasive procedures, AhSonogenetics provides a powerful tool for investigating intact neural circuits and offers promising interventions for neurological disorders.


Assuntos
Holografia , Neurônios , Animais , Holografia/métodos , Camundongos , Neurônios/fisiologia , Dispositivos Eletrônicos Vestíveis , Ondas Ultrassônicas , Corpo Estriado/fisiologia , Encéfalo/fisiologia
3.
Proc Natl Acad Sci U S A ; 120(21): e2212933120, 2023 05 23.
Artigo em Inglês | MEDLINE | ID: mdl-37186852

RESUMO

The glymphatic system is a perivascular fluid transport system for waste clearance. Glymphatic transport is believed to be driven by the perivascular pumping effect created by the pulsation of the arterial wall caused by the cardiac cycle. Ultrasound sonication of circulating microbubbles (MBs) in the cerebral vasculature induces volumetric expansion and contraction of MBs that push and pull on the vessel wall to generate a MB pumping effect. The objective of this study was to evaluate whether glymphatic transport can be mechanically manipulated by focused ultrasound (FUS) sonication of MBs. The glymphatic pathway in intact mouse brains was studied using intranasal administration of fluorescently labeled albumin as fluid tracers, followed by FUS sonication at a deep brain target (thalamus) in the presence of intravenously injected MBs. Intracisternal magna injection, the conventional technique used in studying glymphatic transport, was employed to provide a comparative reference. Three-dimensional confocal microscopy imaging of optically cleared brain tissue revealed that FUS sonication enhanced the transport of fluorescently labeled albumin tracer in the perivascular space (PVS) along microvessels, primarily the arterioles. We also obtained evidence of FUS-enhanced penetration of the albumin tracer from the PVS into the interstitial space. This study revealed that ultrasound combined with circulating MBs could mechanically enhance glymphatic transport in the brain.


Assuntos
Sistema Glinfático , Microbolhas , Camundongos , Animais , Encéfalo/diagnóstico por imagem , Encéfalo/metabolismo , Sistema Glinfático/diagnóstico por imagem , Sistema Glinfático/metabolismo , Ultrassonografia , Albuminas/metabolismo
4.
Radiology ; 307(2): e220869, 2023 04.
Artigo em Inglês | MEDLINE | ID: mdl-36719290

RESUMO

Background Neurodegenerative disorders (such as Alzheimer disease) characterized by the deposition of various pathogenic forms of tau protein in the brain are collectively referred to as tauopathies. Identification of the molecular drivers and pathways of neurodegeneration is critical to individualized targeted treatment of these disorders. However, despite important advances in fluid biomarker detection, characterization of these molecular subtypes is limited by the blood-brain barrier. Purpose To evaluate the feasibility and safety of focused ultrasound-mediated liquid biopsy (sonobiopsy) in the detection of brain-derived protein biomarkers in a transgenic mouse model of tauopathy (PS19 mice). Materials and Methods Sonobiopsy was performed by sonicating the cerebral hemisphere in 2-month-old PS19 and wild-type mice, followed by measurement of plasma phosphorylated tau (p-tau) species (30 minutes after sonication in the sonobiopsy group). Next, spatially targeted sonobiopsy was performed by sonicating either the cerebral cortex or the hippocampus in 6-month-old PS19 mice. To detect changes in plasma neurofilament light chain (a biomarker of neurodegeneration) levels, blood samples were collected before and after sonication (15 and 45-60 minutes after sonication). Histologic staining was performed to evaluate tissue damage after sonobiopsy. The Shapiro-Wilk test, unpaired and paired t tests, and the Mann-Whitney U test were used. Results In the 2-month-old mice, sonobiopsy significantly increased the normalized levels of plasma p-tau species compared with the conventional blood-based liquid biopsy (p-tau-181-to-mouse tau [m-tau] ratio: 1.7-fold increase, P = .006; p-tau-231-to-m-tau ratio: 1.4-fold increase, P = .048). In the 6-month-old PS19 mice, spatially targeted sonobiopsy resulted in a 2.3-fold increase in plasma neurofilament light chain after sonication of the hippocampus and cerebral cortex (P < .001). After optimization of the sonobiopsy parameters, no excess microhemorrhage was observed in the treated cerebral hemisphere compared with the contralateral side. Conclusion This study showed the feasibility of sonobiopsy to release phosphorylated tau species and neurofilament light chain to the blood circulation, potentially facilitating diagnosis of neurodegenerative disorders. © RSNA, 2023 Supplemental material is available for this article. See also the editorial by Fowlkes in this issue.


Assuntos
Doença de Alzheimer , Doenças Neurodegenerativas , Tauopatias , Camundongos , Animais , Tauopatias/diagnóstico por imagem , Tauopatias/metabolismo , Tauopatias/patologia , Proteínas tau/metabolismo , Doença de Alzheimer/metabolismo , Camundongos Transgênicos , Modelos Animais de Doenças , Biomarcadores
5.
Nano Lett ; 22(17): 7144-7150, 2022 09 14.
Artigo em Inglês | MEDLINE | ID: mdl-35868014

RESUMO

To propose the concept of single-atom-kernelled nanocluster, we synthesized a Pd-based trimetal nanocluster with a single-Ag atom-kernel for the first time by introducing some steric hindrance factors and employing a joint alloying strategy that combines the coreduction with an antigalvanic reduction (AGR). Although the AGR-derived Pd-based trimetal nanoclusters with single-silver atom kernels have low contents of gold, they show higher activity and selectivity than those of the bimetal precursor nanocluster in the electrocatalytical reduction of CO2 to CO. Furthermore, it is revealed that the kernel single atoms from both Au4Pd6(TBBT)12 and Au3AgPd6(TBBT)12 are not the active sites for catalysis, but greatly influence the catalytical performance by effecting the electronic configuration. Thus, it is demonstrated that the single-atom-kernelled nanocluster can not only improve the precious metal utilization (even to 100%) but also better the properties and provide insight into the structure-property correlation for metal nanoclusters.


Assuntos
Ouro , Prata , Catálise , Ouro/química , Prata/química
6.
Anal Bioanal Chem ; 414(2): 1015-1028, 2022 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-34750644

RESUMO

The Vitamin D External Quality Assessment Scheme (DEQAS) distributes human serum samples four times per year to over 1000 participants worldwide for the determination of total serum 25-hydroxyvitamin D [25(OH)D)]. These samples are stored at -40 °C prior to distribution and the participants are instructed to store the samples frozen at -20 °C or lower after receipt; however, the samples are shipped to participants at ambient conditions (i.e., no temperature control). To address the question of whether shipment at ambient conditions is sufficient for reliable performance of various 25(OH)D assays, the equivalence of DEQAS human serum samples shipped under frozen and ambient conditions was assessed. As part of a Vitamin D Standardization Program (VDSP) commutability study, two sets of the same nine DEQAS samples were shipped to participants at ambient temperature and frozen on dry ice. Twenty-eight laboratories participated in this study and provided 34 sets of results for the measurement of 25(OH)D using 20 ligand binding assays and 14 liquid chromatography-tandem mass spectrometry (LC-MS/MS) methods. Equivalence of the assay response for the frozen versus ambient DEQAS samples for each assay was evaluated using multi-level modeling, paired t-tests including a false discovery rate (FDR) approach, and ordinary least squares linear regression analysis of frozen versus ambient results. Using the paired t-test and confirmed by FDR testing, differences in the results for the ambient and frozen samples were found to be statistically significant at p < 0.05 for four assays (DiaSorin, DIAsource, Siemens, and SNIBE prototype). For all 14 LC-MS/MS assays, the differences in the results for the ambient- and frozen-shipped samples were not found to be significant at p < 0.05 indicating that these analytes were stable during shipment at ambient conditions. Even though assay results have been shown to vary considerably among different 25(OH)D assays in other studies, the results of this study also indicate that sample handling/transport conditions may influence 25(OH)D assay response for several assays.


Assuntos
Congelamento , Vitamina D/análogos & derivados , Vitamina D/sangue , Cromatografia Líquida/métodos , Humanos , Espectrometria de Massas em Tandem/métodos
7.
J Immunol ; 203(4): 972-980, 2019 08 15.
Artigo em Inglês | MEDLINE | ID: mdl-31253726

RESUMO

Failure of the most recent tuberculosis (TB) vaccine trial to boost bacillus Calmette-Guérin-mediated anti-TB immunity despite the induction of Th1-specific central memory cell and effector memory cell responses highlights the importance of identifying optimal T cell targets for protective vaccines. In this study, we describe a novel, Mycobacterium tuberculosis-specific IFN-γ+CD4+ T cell population expressing surface markers characteristic of naive-like memory T cells (TNLM), which were induced in both human (CD45RA+CCR7+CD27+CD95-) and murine (CD62L+CD44-Sca-1+CD122-) systems in response to mycobacteria. In bacillus Calmette-Guérin-vaccinated subjects and those with latent TB infection, TNLM were marked by the production of IFN-γ but not TNF-α and identified by the absence of CD95 expression and increased surface expression CCR7, CD27, the activation markers T-bet, CD69, and the survival marker CD74. Increased tetramer-positive TNLM frequencies were noted in the lung and spleen of ESAT-61-20-specific TCR transgenic mice at 2 wk postinfection with M. tuberculosis and progressively decreased at later time points, a pattern not seen with TNF-α+CD4+ T cells expressing naive cell surface markers. Importantly, adoptive transfer of highly purified TNLM alone, from vaccinated ESAT-61-20-specific TCR transgenic mice, conferred equivalent protection against M. tuberculosis infection in the lungs of Rag-/- mice when compared with total memory populations (central and effector memory cells). Thus, TNLM may represent a memory T cell population that, if optimally targeted, may significantly improve future TB vaccine responses.


Assuntos
Linfócitos T CD4-Positivos/imunologia , Memória Imunológica/imunologia , Interferon gama/imunologia , Subpopulações de Linfócitos T/imunologia , Tuberculose Pulmonar/imunologia , Animais , Humanos , Camundongos , Camundongos Endogâmicos C57BL , Mycobacterium tuberculosis/imunologia , Fenótipo , Vacinas contra a Tuberculose/imunologia
8.
Anal Bioanal Chem ; 413(20): 5067-5084, 2021 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-34184102

RESUMO

An interlaboratory study was conducted through the Vitamin D Standardization Program (VDSP) to assess commutability of Standard Reference Materials® (SRMs) and proficiency testing/external quality assessment (PT/EQA) samples for determination of serum total 25-hydroxyvitamin D [25(OH)D] using ligand binding assays and liquid chromatography-tandem mass spectrometry (LC-MS/MS). A set of 50 single-donor serum samples were assigned target values for 25-hydroxyvitamin D2 [25(OH)D2] and 25-hydroxyvitamin D3 [25(OH)D3] using reference measurement procedures (RMPs). SRM and PT/EQA samples evaluated included SRM 972a (four levels), SRM 2973, six College of American Pathologists (CAP) Accuracy-Based Vitamin D (ABVD) samples, and nine Vitamin D External Quality Assessment Scheme (DEQAS) samples. Results were received from 28 different laboratories using 20 ligand binding assays and 14 LC-MS/MS methods. Using the test assay results for total serum 25(OH)D (i.e., the sum of 25(OH)D2 and 25(OH)D3) determined for the single-donor samples and the RMP target values, the linear regression and 95% prediction intervals (PIs) were calculated. Using a subset of 42 samples that had concentrations of 25(OH)D2 below 30 nmol/L, one or more of the SRM and PT/EQA samples with high concentrations of 25(OH)D2 were deemed non-commutable using 5 of 11 unique ligand binding assays. SRM 972a (level 4), which has high exogenous concentration of 3-epi-25(OH)D3, was deemed non-commutable for 50% of the LC-MS/MS assays.


Assuntos
Sociedades Médicas/normas , Vitamina D/análogos & derivados , Vitamina D/química , Humanos , Padrões de Referência , Manejo de Espécimes , Vitamina D/sangue
9.
J Am Chem Soc ; 142(28): 12140-12145, 2020 07 15.
Artigo em Inglês | MEDLINE | ID: mdl-32517466

RESUMO

Oscillation is an intriguing phenomenon in nature. However, structural oscillation has not yet been found in semiconducting nanoparticles, primarily due to the difficulty of structural resolution at the atomic level. The emergence of gold nanoclusters (ultrasmall nanoparticles) has provided an excellent opportunity to address some challenging issues in the nanoparticle field. Herein, two Au28(CHT)20 (CHT: cyclohexanethiolate) structural isomers (Au28i and Au28ii for short) were concurrently synthesized by employing a quasi-antigalvanic method, and they could be reversibly transformed into each other for at least 10 cycles, driven by dissolution and crystallization processes. The transformation from Au28ii to Au28i is solvent-dielectric-constant-dependent, with a notable deuteration effect from dichloromethane. The markedly different photoluminescence values of these two isomers not only have important implications for the structure-property correlations but also have potential applications in converting, sensing, etc.


Assuntos
Ouro/química , Nanopartículas Metálicas/química , Cristalização , Estrutura Molecular
10.
Angew Chem Int Ed Engl ; 58(14): 4510-4514, 2019 Mar 26.
Artigo em Inglês | MEDLINE | ID: mdl-30719808

RESUMO

Structural isomerism allows the correlation between structures and properties to be investigated. Unfortunately, the structural isomers of metal nanoparticles are rare and genuine structural isomerism with distinctly different kernel atom packing (e.g., face-centered cubic (fcc) vs. non-fcc) has not been reported until now. Herein we introduce a novel ion-induction method to synthesize a unique gold nanocluster with a twist mirror symmetry structure. The as-synthesized nanocluster has the same composition but different kernel atom packing to an existing gold nanocluster Au42 (TBBT)26 (TBBT=4-tert-butylbenzenethiolate). The fcc-structured Au42 (TBBT)26 nanocluster shows more enhanced photoluminescence than the non-fcc-structured Au42 (TBBT)26 nanocluster, indicating that the fcc-structure is more beneficial for emission than the non-fcc structure. This idea was supported by comparison of the emission intensity of another three pairs of gold nanoclusters with similar compositions and sizes but with different kernel atom packings (fcc vs. non-fcc).

11.
J Am Chem Soc ; 140(10): 3487-3490, 2018 03 14.
Artigo em Inglês | MEDLINE | ID: mdl-29470909

RESUMO

Fine tuning nanoparticles with atomic precision is exciting and challenging and is critical for tuning the properties, understanding the structure-property correlation and determining the practical applications of nanoparticles. Some ultrasmall thiolated metal nanoparticles (metal nanoclusters) have been shown to be precisely doped, and even the protecting staple metal atom could be precisely reduced. However, the precise addition or reduction of the kernel atom while the other metal atoms in the nanocluster remain the same has not been successful until now, to the best of our knowledge. Here, by carefully selecting the protecting ligand with adequate steric hindrance, we synthesized a novel nanocluster in which the kernel can be regarded as that formed by the addition of two silver atoms to both ends of the Pt@Ag12 icosohedral kernel of the Ag24Pt(SR)18 (SR: thiolate) nanocluster, as revealed by single crystal X-ray crystallography. Interestingly, compared with the previously reported Ag24Pt(SR)18 nanocluster, the as-obtained novel bimetal nanocluster exhibits a similar absorption but a different electrochemical gap. One possible explanation for this result is that the kernel tuning does not essentially change the electronic structure, but obviously influences the charge on the Pt@Ag12 kernel, as demonstrated by natural population analysis, thus possibly resulting in the large electrochemical gap difference between the two nanoclusters. This work not only provides a novel strategy to tune metal nanoclusters but also reveals that the kernel change does not necessarily alter the optical and electrochemical gaps in a uniform manner, which has important implications for the structure-property correlation of nanoparticles.

12.
Phys Chem Chem Phys ; 20(28): 18924-18930, 2018 Jul 18.
Artigo em Inglês | MEDLINE | ID: mdl-29700538

RESUMO

Auxetic materials have numerous promising engineering applications such as fracture resistance and energy storage due to their negative Poisson's ratios (NPRs). However, compared to materials possessing positive Poisson's ratios (PPRs), auxetic materials are rare. In this paper, by employing first principles calculations, we found a high NPR two-dimensional (2D) material, tungsten carbide (W2C), in the transition metal carbides (MXenes). Our results of the relatively moderate Young's modulus and fracture strength as well as the critical strain showed that the 2D monolayer W2C is an extraordinary flexible material. Our DFT results also demonstrated that W2C possesses high NPRs while Hf2C and Ta2C have PPRs. Furthermore, the mechanically induced deformation mechanism and the NPR formation mechanism of W2C have been proposed. Such an intrinsic NPR in W2C is attributed to the strong coupling between the C-p and W-d orbitals in the pyramid structural unit. The mechanically induced deformation mechanism and the PPR formation mechanism of Hf2C have also been determined. The intrinsic NPR for W2C transforms to PPR upon the surface functionalization induced. The behavior occurs due to the W-C interaction weakening. The excellent NPR in the 2D MXene material combined with other outstanding properties such as the metallic state would bring about its promising engineering prospects, ranging from the metal-ion battery, to automobiles and aircraft.

13.
Angew Chem Int Ed Engl ; 57(35): 11273-11277, 2018 Aug 27.
Artigo em Inglês | MEDLINE | ID: mdl-30010231

RESUMO

The emergence of thiolated metal nanoclusters provides opportunities to identify significant and unprecedented phenomena because they are at quantum sizes and can be characterized with X-ray crystallography. Recently silver nanoclusters have received extensive interest owing to their merits, such as low-cost and rich properties. Herein, a thiolated silver nanocluster [Ag46 S7 (SPhMe2 )24 ]NO3 (Ag46 for short) with a face-centered cubic (fcc) structure was successfully synthesized and structurally resolved by X-ray analysis. Most importantly, interstitial sulfur was found in the lattice void of Ag46 without lattice distortion or expansion, indicating that the classic theory of interstitial metal solid solutions might be not applicable at quantum size. Furthermore, unprecedented chemical bonds and unique structural features (such as asymmetrically coordinated µ4 -S) were found in Ag46 and might be related to the interstitial sulfur, which is supported by natural population analyses.

14.
Angew Chem Int Ed Engl ; 57(47): 15450-15454, 2018 Nov 19.
Artigo em Inglês | MEDLINE | ID: mdl-30290044

RESUMO

Homology is well known in organic chemistry; however, it has not yet been reported in nanochemistry. Herein, we introduce the concept of kernel homology to describe the phenomenon of metal nanoclusters sharing the same "functional group" in kernels with some similar properties. To illustrate this point, we synthesized two novel gold nanoclusters, Au44 (TBBT)26 and Au48 (TBBT)28 (TBBTH=4-tert-butylbenzenethiol), and solved their total structures by X-ray crystallography, which reveals that they have the same Au23 bi-icosahedron capped with a similar bottom cap (Au6 and Au8 , respectively) in the kernels. The two novel gold nanoclusters, together with the existing Au38 (PET)24 nanocluster (PETH=phenylethanethiol), have the same "functional group"-Au23 -in their kernels and have some similar properties (e.g., electrochemical properties); therefore, they are comparable to the homologues in organic chemistry.

15.
Phys Chem Chem Phys ; 19(19): 11771-11777, 2017 May 17.
Artigo em Inglês | MEDLINE | ID: mdl-28294212

RESUMO

Recently, a new carbon sheet, phagraphene, was proposed by theoretical calculations [Nano Lett. 2015, 15, 6182]. In this paper, hydrogenated and fluorinated phagraphene (denoted as H-PHA and F-PHA) sheets have been systematically studied using first-principles calculations. The results of formation energy, ab initio molecular dynamics, phonon dispersion and elastic constants confirm that the modified phagraphene sheets are thermodynamically and dynamically as well as mechanically stable. We find that hydrogenation or fluorination is an effective way to modulate the bandgap, and we also find that adsorption-induced semimetal-semiconductor transition and adsorption-induced semimetal-insulator transition occur. Configuration-dependent bandgaps for partially H-PHA and configuration-independent bandgaps for fully H-PHA are determined. Adsorption-ratio-dependent bandgaps of H-PHA and F-PHA are also identified. Bandgaps calculated from HSE06 and PBE functionals of fully H-PHA are larger than those of F-PHA, and they are comparable to hydrogenated/fluorinated penta-graphene while they are larger than their corresponding graphene. Dependence of bandgaps of fully H-PHA and F-PHA on the tensile strain is investigated, and our calculations show that an insulator-semiconductor transition occurs upon increasing the tensile strain. Our results also show that the mechanical properties can be controlled using hydrogenation and fluorination. The calculations of Young's modulus and Poisson's ratio reveal that functionalized phagraphene sheets possess suitable stiffness and resistance to volume deformation, and both are smaller than those of the pristine phagraphene.

16.
J Chem Phys ; 146(19): 194303, 2017 May 21.
Artigo em Inglês | MEDLINE | ID: mdl-28527467

RESUMO

We conducted gas phase anion photoelectron spectroscopy and density functional theory studies on a number of gold acetylide species, such as AuC2H, AuC2Au, and Au2C2H. Based on the photoelectron spectra, the electron affinities of AuC2H, AuC2Au, and Au2C2H are measured to be 1.54(±0.04), 1.60(±0.08), and 4.23(±0.08) eV, respectively. The highest occupied molecular orbital-lowest unoccupied molecular orbital (HOMO-LUMO) gaps of AuC2H and AuC2Au are measured to be about 2.62 and 2.48 eV, respectively. It is interesting that photoelectron spectra of AuC2H- and AuC2Au- display similar spectral features. The comparison of experimental and theoretical results confirms that the ground-state structures of AuC2H-, AuC2Au-, and their neutrals are all linear with Au-C≡C-H and Au-C≡C-Au configurations. The similar geometric structures, spectral features, HOMO-LUMO gaps, and chemical bonding between AuC2H-/0 and AuC2Au-/0 demonstrate that Au atom behaves like H atom in these species. The photoelectron spectrum of Au2C2H- shows that Au2C2H has a high electron affinity of 4.23(±0.08) eV, indicating Au2C2H is a superhalogen. Further, we found an unusual similarity between the terminal Au atom of Au2C2H- and the iodine atom of IAuC2H-.

17.
PLoS Comput Biol ; 11(4): e1004249, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25894830

RESUMO

While the role of drug resistance mutations in HIV protease has been studied comprehensively, mutations in its substrate, Gag, have not been extensively cataloged. Using deep sequencing, we analyzed a unique collection of longitudinal viral samples from 93 patients who have been treated with therapies containing protease inhibitors (PIs). Due to the high sequence coverage within each sample, the frequencies of mutations at individual positions were calculated with high precision. We used this information to characterize the variability in the Gag polyprotein and its effects on PI-therapy outcomes. To examine covariation of mutations between two different sites using deep sequencing data, we developed an approach to estimate the tight bounds on the two-site bivariate probabilities in each viral sample, and the mutual information between pairs of positions based on all the bounds. Utilizing the new methodology we found that mutations in the matrix and p6 proteins contribute to continued therapy failure and have a major role in the network of strongly correlated mutations in the Gag polyprotein, as well as between Gag and protease. Although covariation is not direct evidence of structural propensities, we found the strongest correlations between residues on capsid and matrix of the same Gag protein were often due to structural proximity. This suggests that some of the strongest inter-protein Gag correlations are the result of structural proximity. Moreover, the strong covariation between residues in matrix and capsid at the N-terminus with p1 and p6 at the C-terminus is consistent with residue-residue contacts between these proteins at some point in the viral life cycle.


Assuntos
Farmacorresistência Viral/genética , Infecções por HIV/virologia , Inibidores da Protease de HIV/farmacologia , Protease de HIV/genética , HIV-1/efeitos dos fármacos , HIV-1/genética , Produtos do Gene gag do Vírus da Imunodeficiência Humana/genética , Biologia Computacional , Sequenciamento de Nucleotídeos em Larga Escala , Humanos , Mutação/genética
18.
Phys Chem Chem Phys ; 18(35): 24210-8, 2016 Sep 21.
Artigo em Inglês | MEDLINE | ID: mdl-27331603

RESUMO

By employing molecular dynamics simulations, a family of graphyne heterojunctions (GYHJs) made by two different graphynes (GYs) have been designed and prepared. The dependence of tunable properties of GYHJs, such as thermal conductivity, mechanical properties, interfacial thermal resistance and rectification, on the composition and type of GYHJs is determined. Upon changing the composition of a GYHJ, one can keep a constant value of its fracture strength (and/or Young's modulus), while tuning its thermal conductivity. The thermal conductivities of GYHJs in the zigzag direction are larger than those in the armchair direction, indicating GYHJs are anisotropic. By decreasing the percentage of γ-GY, the thermal conductivities of GYHJs γ-GY/6,6,12-GY/γ-GY and γ-GY/14-GY/γ-GY decrease linearly in the armchair direction, whereas they undergo three stages (first decrease, then keep a constant value, and finally increase) in the zigzag direction. Regarding the mechanical response, by increasing the percentage of the graphyne in the GYHJ which possesses smaller Young's modulus, the Young's modulus of the GYHJ decreases. These findings would provide significant insights into the potential applications of graphyne-family materials in nanodevices.

19.
J Phys Chem A ; 120(9): 1520-8, 2016 Mar 10.
Artigo em Inglês | MEDLINE | ID: mdl-26871721

RESUMO

The structural evolution and electronic properties of VnC2(-/0) and VnC4(-/0) (n = 1-6) clusters were investigated using photoelectron spectroscopy and density functional theory calculations. The adiabatic and vertical detachment energies of VnC2(-) and VnC4(-) (n = 1-6) clusters were obtained from their photoelectron spectra. The most stable structures were identified by comparing the results of our calculations with the experimental data. We found that the carbon atoms of VnC2(-/0) and VnC4(-/0) (n = 1-6) clusters were separated gradually with increasing number of vanadium atoms. For VnC2(-/0) (n = 3-6) and VnC4(-/0) (n = 4-6) clusters, the carbon atoms are separated by the vanadium atoms. The geometry of V4C4 is a cubic structure and the geometries of V5C4 and V6C4 are formed by one and two vanadium atoms capping the cubic V4C4 structure, respectively.

20.
J Am Chem Soc ; 137(49): 15350-3, 2015 Dec 16.
Artigo em Inglês | MEDLINE | ID: mdl-26595532

RESUMO

Controlling the dopant type, number, and position in doped metal nanoclusters (nanoparticles) is crucial but challenging. In the work described herein, we successfully achieved the mono-cadmium doping of Au25 nanoclusters, and revealed using X-ray crystallography in combination with theoretical calculations that one of the inner-shell gold atoms of Au25 was replaced by a Cd atom. The doping mode is distinctly different from that of mono-mercury doping, where one of the outer-shell Au atoms was replaced by a Hg atom. Au24Cd is readily transformed to Au24Hg, while the reverse (transformation from Au24Hg to Au24Cd) is forbidden under the investigated conditions.

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