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1.
Anal Biochem ; 608: 113907, 2020 11 01.
Artigo em Inglês | MEDLINE | ID: mdl-32814078

RESUMO

Snake venom prothrombin activators such as Ecarin are readily assayed by continuous spectrophotometric monitoring of p-nitroaniline production in a one step assay containing prothrombin and a p-nitroanilide peptide substrate for thrombin. The coupled reactions result in accelerating p-nitroaniline (pNA) production over the course of the assay giving non-linear progress curves, from which initial velocities are not readily obtained. Most studies therefore resort to approximate estimates of activity, based on the absorbance reached at an arbitrary time. A simple kinetic analysis of the coupled reactions shows that the early points of such curves should be fitted by second order polynomials, representing the accelerating reaction rate in µmol pNA/min/min. The first derivative of the polynomial then gives the increasing velocity of pNA production in µmol pNA/min over the time course of the assay. We demonstrate here that, with the substrate S2238, these rates can be converted to absolute thrombin concentrations using the Michaelis-Menten equation, substituted with values for kcat and Km. These thrombin concentrations increase linearly over the time course of the assay allowing the activity to be expressed in units, defined as µmol product/min, most commonly used to report enzyme activity.


Assuntos
Compostos Cromogênicos/química , Dipeptídeos/química , Endopeptidases/análise , Ensaios Enzimáticos/métodos , Compostos de Anilina/química , Animais , Humanos , Hidrólise , Cinética , Limite de Detecção , Modelos Lineares , Protrombina/química , Padrões de Referência , Reprodutibilidade dos Testes , Trombina/química
2.
Clin Chem Lab Med ; 57(4): 483-497, 2019 03 26.
Artigo em Inglês | MEDLINE | ID: mdl-30267622

RESUMO

Background Incomplete blood clotting or latent clotting in serum is a common laboratory problem, especially for patients on anticoagulant therapy or when serum tubes are centrifuged before clotting is completed. We describe a novel approach to producing high-quality serum using snake venom prothrombin activator complex (OsPA) as an additive in blood collection tubes for non-anticoagulated (normal) individuals. Methods Plasma clotting assays were performed using a Hyland-Clotek instrument. Blood clotting was visually observed, and thromboelastography was also performed to determine the important parameters of coagulation. Thrombin generation was assayed using the chromogenic substrate S-2238, and biochemical analytes in the serum were determined on chemistry and immunoassay analysers. Fibrinogen was determined by either ELISA or Clauss fibrinogen assay. Results We initially showed that OsPA had strong coagulation activity in clotting not only recalcified citrated plasma and recalcified citrated whole blood, but also fresh whole blood in a clinical setting. The use of TEG clearly showed improved speed of clotting and generation of a firmer clot. We also showed that the use of OsPA to produce serum did not interfere with the determination of commonly measured biochemical analytes. The underlying clotting mechanism involves a burst of thrombin production at the initial stages of the clotting process upon contact with prothrombin in blood. Conclusions These results demonstrate rapid generation of high-quality serum, contributing to faster turnaround times with standardised quality samples, for accurate analyte determinations in normal individuals.


Assuntos
Testes de Coagulação Sanguínea , Coagulação Sanguínea/efeitos dos fármacos , Coleta de Amostras Sanguíneas , Coagulantes/farmacologia , Protrombina/farmacologia , Animais , Voluntários Saudáveis , Humanos , Venenos de Serpentes/química
3.
Biomolecules ; 14(6)2024 May 30.
Artigo em Inglês | MEDLINE | ID: mdl-38927049

RESUMO

We recently reported the potential application of recombinant prothrombin activator ecarin (RAPClot™) in blood diagnostics. In a new study, we describe RAPClot™ as an additive to develop a novel blood collection prototype tube that produces the highest quality serum for accurate biochemical analyte determination. The drying process of the RAPClot™ tube generated minimal effect on the enzymatic activity of the prothrombin activator. According to the bioassays of thrombin activity and plasma clotting, γ-radiation (>25 kGy) resulted in a 30-40% loss of the enzymatic activity of the RAPClot™ tubes. However, a visual blood clotting assay revealed that the γ-radiation-sterilized RAPClot™ tubes showed a high capacity for clotting high-dose heparinized blood (8 U/mL) within 5 min. This was confirmed using Thrombelastography (TEG), indicating full clotting efficiency under anticoagulant conditions. The storage of the RAPClot™ tubes at room temperature (RT) for greater than 12 months resulted in the retention of efficient and effective clotting activity for heparinized blood in 342 s. Furthermore, the enzymatic activity of the RAPClot™ tubes sterilized with an electron-beam (EB) was significantly greater than that with γ-radiation. The EB-sterilized RAPClot™ tubes stored at RT for 251 days retained over 70% enzyme activity and clotted the heparinized blood in 340 s after 682 days. Preliminary clinical studies revealed in the two trials that 5 common analytes (K, Glu, lactate dehydrogenase (LD), Fe, and Phos) or 33 analytes determined in the second study in the γ-sterilized RAPClot™ tubes were similar to those in commercial tubes. In conclusion, the findings indicate that the novel RAPClot™ blood collection prototype tube has a significant advantage over current serum or lithium heparin plasma tubes for routine use in measuring biochemical analytes, confirming a promising application of RAPClot™ in clinical medicine.


Assuntos
Proteínas Recombinantes , Humanos , Coagulação Sanguínea/efeitos dos fármacos , Soro/química , Soro/metabolismo , Tromboplastina/metabolismo , Coleta de Amostras Sanguíneas/métodos , Tromboelastografia/métodos , Raios gama , Anticoagulantes/farmacologia , Anticoagulantes/química
4.
Biomolecules ; 12(11)2022 11 17.
Artigo em Inglês | MEDLINE | ID: mdl-36421717

RESUMO

We describe here the purification and cloning of a codon-optimized form of the snake prothrombin activator ecarin from the saw scaled viper (Echis carinatus) expressed in mammalian cells. Expression of recombinant ecarin (rEcarin) was carried out in human embryonic kidney cells (HEK) cells under conditions for the development and performance of a novel and scalable recombinant snake ecarin to industry standards. Clotting performance of the rEcarin was established in recalcified citrated whole blood, plasma, and fresh whole blood and found to be comparable to native ecarin (N-Ecarin). Furthermore, hemolysis was observed with N-Ecarin at relatively high doses in both recalcified citrated and fresh whole blood, while clotting was not observed with rEcarin, providing an important advantage for the recombinant form. In addition, rEcarin effectively clotted both recalcified citrated whole blood and fresh whole blood containing different anticoagulants including heparin, warfarin, dabigatran, Fondaparinux, rivaroxaban and apixaban, forming firm clots in the blood collection tubes. These results demonstrate that rEcarin efficiently clots normal blood as well as blood spiked with high concentrations of anticoagulants and has great potential as an additive to blood collection tubes to produce high quality serum for analyte analysis in diagnostic medicine.


Assuntos
Endopeptidases , Protrombina , Trombose , Venenos de Víboras , Animais , Humanos , Anticoagulantes/farmacologia , Protrombina/metabolismo , Serpentes , Tromboplastina , Venenos de Víboras/farmacologia , Endopeptidases/farmacologia
5.
Blood ; 114(3): 686-92, 2009 Jul 16.
Artigo em Inglês | MEDLINE | ID: mdl-19365080

RESUMO

Venomous snakes produce an array of toxic compounds, including procoagulants to defend themselves and incapacitate prey. The Australian snake Pseudonaja textilis has a venom-derived prothrombin activator homologous to coagulation factors V (FV) and Xa (FXa). Here we show that the FV component (pt-FV) has unique biologic properties that subvert the normal regulatory restraints intended to restrict an unregulated procoagulant response. Unlike human FV, recombinant pt-FV is constitutively active and does not require proteolytic processing to function. Sequence comparisons show that it has shed a large portion of the central B-domain, including residues that stabilize the inactive procofactor state. Remarkably, pt-FV functions in the absence of anionic membranes as it binds snake-FXa with high affinity in solution. Furthermore, despite cleavage in the heavy chain, pt-FV is functionally resistant to activated protein C, an anticoagulant. We speculate this stability is the result of noncovalent interactions and/or a unique disulfide bond in pt-FV linking the heavy and light chains. Taken together, these findings provide a biochemical rationale for the strong procoagulant nature of venom prothrombinase. Furthermore, they illustrate how regulatory mechanisms designed to limit the hemostatic response can be uncoupled to provide a sustained, disseminated procoagulant stimulus for use as a biologic toxin.


Assuntos
Coagulação Sanguínea , Fator V/fisiologia , Venenos de Serpentes/enzimologia , Tromboplastina/química , Animais , Fator V/química , Fator Xa , Hemostasia , Humanos , Estabilidade Proteica , Alinhamento de Sequência , Serpentes
6.
IUBMB Life ; 62(7): 483-5, 2010 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-20552638

RESUMO

Past and present relationships of three biochemistry and molecular biology organizations: the Australian Society for Biochemistry and Molecular Biology; the Federation of Asian and Oceanian Biochemists and Molecular Biologists (FAOBMB); and the International Union for Biochemistry and Molecular Biology are discussed. The future of these organizations, particularly FAOBMB, is then considered in the light of factors behind their current status and likely future effects of globalization, growth in Asia, changes in disciplinary focus and contribution to global issues.


Assuntos
Bioquímica , Biologia Molecular , Sociedades Científicas , Ásia , Austrália , Bioquímica/tendências , Previsões , Cooperação Internacional , Biologia Molecular/tendências
7.
Clin Chem Lab Med ; 48(5): 651-7, 2010 May.
Artigo em Inglês | MEDLINE | ID: mdl-20218902

RESUMO

BACKGROUND: Obtaining a suitable specimen for analysis in a timely manner is pivotal in clinical chemistry service provision. Serum is recognized as the preferred specimen for most assays, but because of time constraints for completion of clotting and an increasing number of patients on anti-coagulant therapy, latent clotting or no clotting is an outcome which can lead to errors and delay in delivery of critical results. Although lithium heparin plasma has unique problems, it has become an alternative in hospital-based laboratories. METHODS: The Becton-Dickinson (BD) rapid serum tube (RST) was evaluated in a hospital environment using a total of 53 participants, both healthy and anticoagulated, for 31 analytes against BD PST II and BD SST II tubes measured with Beckman DxC800 and DxI800 analyzers. RESULTS: Most results from the RST tube were comparable with those from the SST II tube. Potassium results were closer to the PST II plasma concentrations. Incomplete and latent clotting was encountered in the RST specimens from participants (cardiac and dialysis) who had received a total of >7000 units of heparin [activated partial thromboplastin time (APTT) >150 s], warfarin/heparin combination, and specimens from cardiac surgery patients who had received a total of >25,000 units of heparin (APTT >200 s) at the time of collection of specimens. CONCLUSIONS: The RST tube provides a suitable alternative to lithium heparin plasma tubes for most patients in a hospital environment. However, latent clotting continued to occur in specimens collected from participants who had received high concentrations of anticoagulants.


Assuntos
Anticoagulantes/química , Coleta de Amostras Sanguíneas/instrumentação , Heparina/química , Lítio/química , Análise Química do Sangue , Humanos
8.
Br J Haematol ; 145(2): 207-11, 2009 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-19236611

RESUMO

Aprotinin has been used widely in surgery as an anti-bleeding agent but is associated with a number of side effects. We report that textilinin-1, a serine protease inhibitor from Pseudonaja textilis venom with sequence relatedness to aprotinin, is a potent but reversible plasmin inhibitor and has a narrower range of protease inhibition compared to aprotinin. Like aprotinin, textilinin-1 at 5 micromol/l gave almost complete inhibition of tissue plasminogen activator-induced fibrinolysis of whole blood clots. The activated partial thromboplastin time for plasma was markedly increased by aprotinin but unaffected by textilinin-1. In a mouse tail-vein bleeding model, intravenous textilinin-1 and aprotinin caused similar decreases in blood loss but time to haemostasis in the textilinin-treated animals was significantly shorter than in aprotinin-treated mice. Based on these data, textilinin-1 merits further investigation as a therapeutic alternative to aprotinin.


Assuntos
Aprotinina/uso terapêutico , Perda Sanguínea Cirúrgica/prevenção & controle , Venenos Elapídicos/uso terapêutico , Fibrinolisina/antagonistas & inibidores , Inibidores de Serina Proteinase/uso terapêutico , Análise de Variância , Animais , Fibrinólise/efeitos dos fármacos , Hemostasia , Camundongos , Fatores de Tempo
9.
Bioorg Med Chem ; 17(17): 6218-32, 2009 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-19666228

RESUMO

The malarial parasite Plasmodium falciparum (Pf) lacks the de novo pathway and relies on the salvage enzyme, hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRT), for the synthesis of the 6-oxopurine nucleoside monophosphates. Specific acyclic nucleoside phosphonates (ANPs) inhibit PfHGXPRT and possess anti-plasmodial activity. Two series of novel branched ANPs derived from 9-[2-(2-phosphonoethoxy)ethyl]purines were synthesized to investigate their inhibition of PfHGXPRT and human HGPRT. The best inhibitor of PfHGXPRT has a K(i) of 1 microM. The data showed that both the position and nature of the hydrophobic substituent change the potency and selectivity of the ANPs.


Assuntos
Antimaláricos/síntese química , Inibidores Enzimáticos/síntese química , Pentosiltransferases/antagonistas & inibidores , Plasmodium falciparum/enzimologia , Purinas/síntese química , Animais , Antimaláricos/química , Antimaláricos/farmacologia , Domínio Catalítico , Simulação por Computador , Desenho de Fármacos , Inibidores Enzimáticos/química , Inibidores Enzimáticos/farmacologia , Humanos , Organofosfonatos/química , Pentosiltransferases/metabolismo , Purinas/química , Purinas/farmacologia
10.
Biochem Med (Zagreb) ; 29(3): 030706, 2019 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-31624459

RESUMO

INTRODUCTION: Failure to obtain complete blood clotting in serum is a common laboratory problem. Our aim was to determine whether snake proth-rombin activators are effective in clotting blood and producing quality serum for analyte measurement in anticoagulated patients. MATERIALS AND METHODS: Whole blood clotting was studied in a total of 64 blood samples (41 controls, 20 Warfarin patients, 3 anticoagulated patients using snake venom prothrombin activator (OsPA)) with plain tubes. Coagulation was analysed using a visual assay, Hyland-Clotek and thromboelastography. Healthy control blood was spiked with a range of anticoagulants to determine the effectiveness of OsPa-induced clotting. A paired analysis of a Dabigatran patient and a control investigated the effectiveness of the OsPA clotting tubes. Biochemical analytes (N = 31) were determined for 7 samples on chemistry and immunoassay analysers and compared with commercial tubes. RESULTS: Snake venom prothrombin activators efficiently coagulated blood and plasma spiked with heparin and commonly used anticoagulants. Clotting was observed in the presence of anticoagulants whereas no clotting was observed in BDRST tubes containing 3 U/mL of heparin. Snake venom prothrombin activator enhanced heparinised blood clotting by shortening substantially the clotting time and improving significantly the strength of the clot. Comparison of 31 analytes from the blood of five healthy and two anticoagulated participants gave very good agreement between the analyte concentrations determined. CONCLUSIONS: Our results showed that the snake venom prothrombin activators OsPA and PtPA efficiently coagulated recalcified and fresh bloods with or without added anticoagulants. These procoagulants produced high quality serum for accurate analyte measurement.


Assuntos
Anticoagulantes/farmacologia , Protrombina/farmacologia , Coagulação Sanguínea/efeitos dos fármacos , Testes de Coagulação Sanguínea , Heparina/farmacologia , Humanos
11.
Biochimie ; 88(12): 1923-31, 2006 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-16908092

RESUMO

The venom from Australian elapid snakes contains a complex mixture of polypeptide toxins that adversely affect multiple homeostatic systems within their prey in a highly specific and targeted manner. Included in these toxin families are the recently described venom natriuretic peptides, which display similar structure and vasoactive functions to mammalian natriuretic peptides. This paper describes the identification and detailed comparative analysis of the cDNA transcripts coding for the mature natriuretic peptide from a total of nine Australian elapid snake species. Multiple isoforms were identified in a number of species and represent the first description of a natriuretic peptide from the venom gland for most of these snakes. Two distinct natriuretic peptide isoforms were selected from the common brown snake (Pseudonaja textilis), PtNP-a, and the mulga (Pseudechis australis), PaNP-c, for recombinant protein expression and functional analysis. Only one of these peptides, PtNP-a, displayed cGMP stimulation indicative of normal natriuretic peptide activity. Interestingly, both recombinant peptides demonstrated a dose-dependent inhibition of angiotensin converting enzyme (ACE) activity, which is predictive of the vasoactive effects of the toxin. The natriuretic peptides, however, did not possess any coagulopathic activity, nor did they inhibit or potentiate thrombin, adenosine diphosphate or arachidonic acid induced platelet aggregation. The data presented in this study represent a significant resource for understanding the role of various natriuretic peptides isoforms during the envenomation process by Australian elapid snakes.


Assuntos
Venenos Elapídicos/genética , Elapidae/genética , Peptídeos Natriuréticos/genética , Sequência de Aminoácidos , Inibidores da Enzima Conversora de Angiotensina/farmacologia , Animais , Linhagem Celular , Clonagem Molecular , GMP Cíclico/metabolismo , DNA Complementar/química , DNA Complementar/genética , Relação Dose-Resposta a Droga , Venenos Elapídicos/metabolismo , Venenos Elapídicos/farmacologia , Eletroforese em Gel de Poliacrilamida , Humanos , Dados de Sequência Molecular , Peptídeos Natriuréticos/metabolismo , Peptídeos Natriuréticos/farmacologia , Peptidil Dipeptidase A/metabolismo , Agregação Plaquetária/efeitos dos fármacos , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Proteínas Recombinantes/farmacologia , Alinhamento de Sequência , Análise de Sequência de DNA
12.
J Mol Biol ; 351(1): 170-81, 2005 Aug 05.
Artigo em Inglês | MEDLINE | ID: mdl-15990111

RESUMO

Human hypoxanthine-guanine phosphoribosyltransferase (HGPRT) catalyses the synthesis of the purine nucleoside monophosphates, IMP and GMP, by the addition of a 6-oxopurine base, either hypoxanthine or guanine, to the 1-beta-position of 5-phospho-alpha-d-ribosyl-1-pyrophosphate (PRib-PP). The mechanism is sequential, with PRib-PP binding to the free enzyme prior to the base. After the covalent reaction, pyrophosphate is released followed by the nucleoside monophosphate. A number of snapshots of the structure of this enzyme along the reaction pathway have been captured. These include the structure in the presence of the inactive purine base analogue, 7-hydroxy [4,3-d] pyrazolo pyrimidine (HPP) and PRib-PP.Mg2+, and in complex with IMP or GMP. The third structure is that of the immucillinHP.Mg(2+).PP(i) complex, a transition-state analogue. Here, the first crystal structure of free human HGPRT is reported to 1.9A resolution, showing that significant conformational changes have to occur for the substrate(s) to bind and for catalysis to proceed. Included in these changes are relative movement of subunits within the tetramer, rotation and extension of an active-site alpha-helix (D137-D153), reorientation of key active-site residues K68, D137 and K165, and the rearrangement of three active-site loops (100-128, 165-173 and 186-196). Toxoplasma gondii HGXPRT is the only other 6-oxopurine phosphoribosyltransferase structure solved in the absence of ligands. Comparison of this structure with human HGPRT reveals significant differences in the two active sites, including the structure of the flexible loop containing K68 (human) or K79 (T.gondii).


Assuntos
Hipoxantina Fosforribosiltransferase/química , Sítios de Ligação , Catálise , Cristalografia por Raios X , Guanosina Monofosfato/química , Humanos , Hipoxantina Fosforribosiltransferase/metabolismo , Inosina Monofosfato/química , Fosforribosil Pirofosfato/química , Ligação Proteica , Conformação Proteica , Pirazóis/química , Pirimidinas/química
13.
J Med Chem ; 49(25): 7479-86, 2006 Dec 14.
Artigo em Inglês | MEDLINE | ID: mdl-17149876

RESUMO

The malarial parasite Plasmodium falciparum depends on the purine salvage enzyme hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRT) to convert purine bases from the host to nucleotides needed for DNA and RNA synthesis. An approach to developing antimalarial drugs is to use HGXPRT to convert introduced purine base analogs to nucleotides that are toxic to the parasite. This strategy requires that these compounds be good substrates for the parasite enzyme but poor substrates for the human counterpart, HGPRT. Bases with a chlorine atom in the 6-position or a nitrogen in the 8-position exhibited strong discrimination between P. falciparum HGXPRT and human HGPRT. The k(cat)/K(m) values for the Plasmodium enzyme using 6-chloroguanine and 8-azaguanine as substrates were 50 - 80-fold and 336-fold higher than for the human enzyme, respectively. These and other bases were effective in inhibiting the growth of the parasite in vitro, giving IC(50) values as low as 1 microM.


Assuntos
Antimaláricos/química , Guanina/análogos & derivados , Hipoxantina Fosforribosiltransferase/antagonistas & inibidores , Hipoxantinas/química , Pentosiltransferases/antagonistas & inibidores , Plasmodium falciparum/enzimologia , Purinas/química , Animais , Antimaláricos/farmacologia , Guanina/química , Guanina/farmacologia , Humanos , Hipoxantina Fosforribosiltransferase/química , Hipoxantinas/farmacologia , Cinética , Pentosiltransferases/química , Plasmodium falciparum/efeitos dos fármacos , Purinas/farmacologia , Relação Estrutura-Atividade
14.
Artigo em Inglês | MEDLINE | ID: mdl-16820682

RESUMO

Textilinin-1 (Txln-1), a Kunitz-type serine protease inhibitor, is a 59-amino-acid polypeptide isolated from the venom of the Australian Common Brown snake Pseudonaja textilis textilis. This molecule has been suggested as an alternative to aprotinin, also a Kunitz-type serine protease inhibitor, for use as an anti-bleeding agent in surgical procedures. Txln-1 shares only 47% amino-acid identity to aprotinin; however, six cysteine residues in the two peptides are in conserved locations. It is therefore expected that the overall fold of these molecules is similar but that they have contrasting surface features. Here, the crystallization of recombinant textilinin-1 (rTxln-1) as the free molecule and in complex with bovine trypsin (229 amino acids) is reported. Two organic solvents, phenol and 1,4-butanediol, were used as additives to facilitate the crystallization of free rTxln-1. Crystals of the rTxln-1-bovine trypsin complex diffracted to 2.0 angstroms resolution, while crystals of free rTxln-1 diffracted to 1.63 angstroms resolution.


Assuntos
Aprotinina/química , Venenos Elapídicos/química , Sequência de Aminoácidos , Animais , Bovinos , Cristalização , Cristalografia por Raios X , Venenos Elapídicos/isolamento & purificação , Elapidae , Fibrinolisina/antagonistas & inibidores , Homologia de Sequência de Aminoácidos , Tripsina/química , Tripsina/isolamento & purificação , Difração de Raios X
15.
Toxicon ; 111: 37-49, 2016 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-26747471

RESUMO

Pseudechis australis is one of the most venomous and lethal snakes in Australia. Numerous phospholipase A2 (PLA2) isoforms constitute a major portion of its venom, some of which have previously been shown to exhibit not only enzymatic, but also haemolytic, neurotoxic and anticoagulant activities. Here, we have purified a potent anticoagulant PLA2 (identified as PA11) from P. australis venom to investigate its phospholipase, anticoagulant, haemolytic and cytotoxic activities and shown that addition of 11 nM PA11 resulted in a doubling of the clotting time of recalcified whole blood. We have also demonstrated that PA11 has high PLA2 enzymatic activity (10.9 × 10(4) Units/mg), but low haemolytic activity (0.6% of red blood cells hydrolysed in the presence of 1 nM PA11). PA11 at a concentration lower than 600 nM is not cytotoxic towards human cultured cells. Chemical modification experiments using p-bromophenacyl bromide have provided evidence that the catalytic histidine of PA11 is critical for the anticoagulant activity of this PLA2. PA11 that was subjected to trypsin digestion without previous reduction and alkylation of the disulfide bonds maintained enzymatic and anticoagulant activity, suggesting that proteolysis alone cannot abolish these properties. Consistent with these results, administration of PA11 by gavage in a rabbit stasis thrombosis model increased the clotting time of recalcified citrated whole blood by a factor of four. These data suggest that PA11 has potential to be developed as an anticoagulant in a clinical setting.


Assuntos
Proteínas Sanguíneas/farmacologia , Venenos Elapídicos/química , Elapidae/fisiologia , Fosfolipases A2/metabolismo , Sequência de Aminoácidos , Animais , Proteínas Sanguíneas/química , Humanos , Modelos Moleculares , Doenças do Nervo Oculomotor , Conformação Proteica , Tempo de Protrombina , Coelhos , Tromboelastografia
16.
Protein Sci ; 11(7): 1626-38, 2002 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-12070315

RESUMO

Crystal structures have been determined for free Escherichia coli hypoxanthine phosphoribosyltransferase (HPRT) (2.9 A resolution) and for the enzyme in complex with the reaction products, inosine 5'-monophosphate (IMP) and guanosine 5'-monophosphate (GMP) (2.8 A resolution). Of the known 6-oxopurine phosphoribosyltransferase (PRTase) structures, E. coli HPRT is most similar in structure to that of Tritrichomonas foetus HGXPRT, with a rmsd for 150 Calpha atoms of 1.0 A. Comparison of the free and product bound structures shows that the side chain of Phe156 and the polypeptide backbone in this vicinity move to bind IMP or GMP. A nonproline cis peptide bond, also found in some other 6-oxopurine PRTases, is observed between Leu46 and Arg47 in both the free and complexed structures. For catalysis to occur, the 6-oxopurine PRTases have a requirement for divalent metal ion, usually Mg(2+) in vivo. In the free structure, a Mg(2+) is coordinated to the side chains of Glu103 and Asp104. This interaction may be important for stabilization of the enzyme before catalysis. E. coli HPRT is unique among the known 6-oxopurine PRTases in that it exhibits a marked preference for hypoxanthine as substrate over both xanthine and guanine. The structures suggest that its substrate specificity is due to the modes of binding of the bases. In E. coli HPRT, the carbonyl oxygen of Asp163 would likely form a hydrogen bond with the 2-exocyclic nitrogen of guanine (in the HPRT-guanine-PRib-PP-Mg(2+) complex). However, hypoxanthine does not have a 2-exocyclic atom and the HPRT-IMP structure suggests that hypoxanthine is likely to occupy a different position in the purine-binding pocket.


Assuntos
Escherichia coli/enzimologia , Guanosina Monofosfato/metabolismo , Hipoxantina Fosforribosiltransferase/química , Inosina Monofosfato/metabolismo , Sequência de Aminoácidos , Animais , Sítios de Ligação , Clonagem Molecular , Cristalografia por Raios X , Humanos , Hipoxantina Fosforribosiltransferase/isolamento & purificação , Hipoxantina Fosforribosiltransferase/metabolismo , Cinética , Dados de Sequência Molecular , Pentosiltransferases/metabolismo , Estrutura Quaternária de Proteína , Estrutura Terciária de Proteína , Alinhamento de Sequência , Espectrometria de Massas por Ionização por Electrospray , Tritrichomonas foetus/metabolismo
17.
PLoS One ; 8(1): e54104, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23335990

RESUMO

Textilinin-1 is a Kunitz-type serine protease inhibitor from Australian brown snake venom. Its ability to potently and specifically inhibit human plasmin (K(i) = 0.44 nM) makes it a potential therapeutic drug as a systemic anti-bleeding agent. The crystal structures of the human microplasmin-textilinin-1 and the trypsin-textilinin-1 complexes have been determined to 2.78 Å and 1.64 Å resolution respectively, and show that textilinin-1 binds to trypsin in a canonical mode but to microplasmin in an atypical mode with the catalytic histidine of microplasmin rotated out of the active site. The space vacated by the histidine side-chain in this complex is partially occupied by a water molecule. In the structure of microplasminogen the χ(1) dihedral angle of the side-chain of the catalytic histidine is rotated by 67° from its "active" position in the catalytic triad, as exemplified by its location when microplasmin is bound to streptokinase. However, when textilinin-1 binds to microplasmin the χ(1) dihedral angle of this amino acid residue changes by -157° (i.e. in the opposite rotation direction compared to microplasminogen). The unusual mode of interaction between textilinin-1 and plasmin explains textilinin-1's selectivity for human plasmin over plasma kallikrein. This difference can be exploited in future drug design efforts.


Assuntos
Venenos Elapídicos/química , Fibrinolisina/química , Substâncias Macromoleculares/química , Fragmentos de Peptídeos/química , Venenos de Serpentes/química , Sequência de Aminoácidos , Animais , Aprotinina/farmacologia , Cristalografia por Raios X , Venenos Elapídicos/farmacologia , Fibrinolisina/análise , Fibrinolisina/antagonistas & inibidores , Humanos , Simulação de Acoplamento Molecular , Dados de Sequência Molecular , Fragmentos de Peptídeos/antagonistas & inibidores , Calicreína Plasmática/antagonistas & inibidores , Ligação Proteica , Conformação Proteica , Alinhamento de Sequência , Venenos de Serpentes/farmacologia , Tripsina/química , Tripsina/metabolismo
18.
J Med Chem ; 56(6): 2513-26, 2013 Mar 28.
Artigo em Inglês | MEDLINE | ID: mdl-23448281

RESUMO

Acyclic nucleoside phosphonates (ANPs) that contain a 6-oxopurine base are good inhibitors of the Plasmodium falciparum (Pf) and Plasmodium vivax (Pv) 6-oxopurine phosphoribosyltransferases (PRTs). Chemical modifications based on the crystal structure of 2-(phosphonoethoxy)ethylguanine (PEEG) in complex with human HGPRT have led to the design of new ANPs. These novel compounds contain a second phosphonate group attached to the ANP scaffold. {[(2-[(Guanine-9H-yl)methyl]propane-1,3-diyl)bis(oxy)]bis(methylene)}diphosphonic acid (compound 17) exhibited a Ki value of 30 nM for human HGPRT and 70 nM for Pf HGXPRT. The crystal structure of this compound in complex with human HGPRT shows that it fills or partially fills three critical locations in the active site: the binding sites of the purine base, the 5'-phosphate group, and pyrophosphate. This is the first HG(X)PRT inhibitor that has been able to achieve this result. Prodrugs have been synthesized resulting in IC50 values as low as 3.8 µM for Pf grown in cell culture, up to 25-fold lower compared to the parent compounds.


Assuntos
Antimaláricos/química , Antimaláricos/farmacologia , Inibidores Enzimáticos/química , Inibidores Enzimáticos/farmacologia , Hipoxantina Fosforribosiltransferase/antagonistas & inibidores , Organofosfonatos/química , Organofosfonatos/farmacologia , Antimaláricos/toxicidade , Domínio Catalítico , Linhagem Celular Tumoral , Inibidores Enzimáticos/toxicidade , Humanos , Hipoxantina Fosforribosiltransferase/química , Modelos Moleculares , Organofosfonatos/toxicidade , Plasmodium falciparum/efeitos dos fármacos , Plasmodium falciparum/enzimologia
19.
J Med Chem ; 56(17): 6967-84, 2013 Sep 12.
Artigo em Inglês | MEDLINE | ID: mdl-23927482

RESUMO

Escherichia coli (Ec) cells possess two purine salvage enzymes: xanthine-guanine phosphoribosyltransferase (XGPRT) and hypoxanthine phosphoribosyltransferase (HPRT). EcXGPRT shares a common structural feature with other members of this family, a flexible loop that closes over the active site during catalysis. The replacement of six of these amino acids by alanine has no effect on the Km for the two substrates. However, the Ki for the nucleoside monophosphate increases by 27-fold, and the kcat is reduced by ∼200-fold. Nucleoside phosphonates (NP) are good inhibitors of EcXGPRT and EcHPRT, with Ki values as low as 10 nM. In the absence of the flexible loop, these values increase by 5- to 30-fold, indicating the importance of the loop for high-affinity inhibition. Crystal structures of two NPs in complex with EcXGPRT explain the tight binding. Prodrugs of NPs with low Ki values for EcXGPRT or EcHPRT exhibit IC50 values between 5 and 23 µM against Mycobacterium tuberculosis in cell-based assays, suggesting that these compounds are therapeutic leads against pathogenic bacteria.


Assuntos
Antibacterianos/farmacologia , Escherichia coli/enzimologia , Hipoxantina Fosforribosiltransferase/metabolismo , Sequência de Aminoácidos , Catálise , Domínio Catalítico , Hipoxantina Fosforribosiltransferase/química , Espectrometria de Massas , Modelos Moleculares , Dados de Sequência Molecular , Estrutura Molecular , Homologia de Sequência de Aminoácidos
20.
Toxicon ; 59(4): 456-63, 2012 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-21184772

RESUMO

Snake venoms are attractive for drug discovery and development, with a number of therapeutics derived from snake venom either in clinical use or in development. Recognising this opportunity, Australian biopharmaceutical company QRxPharma Ltd and its subsidiary Venomics Pty Ltd (VPL) has partnered with the University of Queensland (UQ) to screen and develop drug candidates from Australian elapid snake venoms. VPL has three haemostasis candidates in early preclinical development. Textilinin-1 (Q8008) is a 7 kDa potent and selective plasmin inhibitor that has application as an anti-fibrinolytic agent to reduce blood loss associated with complex surgeries. Haempatch™ (Q8009) is a Factor Xa-like protein that displays potent procoagulant effects and is being developed as a topical haemostatic agent to reduce blood loss resulting from surgery or trauma. CoVase™ (V0801) is a procoagulant cofactor that may have application as a systemic anti-bleeding agent in the treatment of internal bleeding and non-compressible haemorrhage. This review focuses on drug discovery from Australian elapid snake venoms, with emphasis on the QRxPharma/VPL drug discovery project undertaken in collaboration with UQ and candidates at further stages of development.


Assuntos
Antifibrinolíticos/farmacologia , Venenos Elapídicos/farmacologia , Elapidae , Hemostasia/efeitos dos fármacos , Proteínas de Répteis/farmacologia , Serina Endopeptidases/farmacologia , Animais , Austrália , Descoberta de Drogas , Fator Xa/farmacologia , Hemorragia/tratamento farmacológico , Hemostáticos/farmacologia , Humanos
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