Direct Evidence for Microbial Regulation of the Temperature Sensitivity of Soil Carbon Decomposition.

Soil physicochemical protection, substrates, and microorganisms are thought to modulate the temperature sensitivity of soil carbon decomposition (Q10), but their regulatory roles have yet to be distinguished because of the confounding effects of concurrent changes of them. Here, we sought to differentiate these effects through microorganism reciprocal transplant and aggregate disruption experiments using soils collected from seven sites along a 5000-km latitudinal transect encompassing a wide range of climatic conditions and from a 4-year laboratory incubation experiment. We found direct microbial regulation of Q10, with a higher Q10 being associated with greater fungal:bacterial ratios. However, no significant direct effects of physicochemical protection and substrate were observed on the variation in Q10 along the latitudinal transect or among different incubation time points. These findings highlight that we should move forward from physicochemical protection and substrate to microbial mechanisms regulating soil carbon decomposition temperature sensitivity to understand and better predict soil carbon-climate feedback.

Thermal adaptation of microbial respiration persists throughout long-term soil carbon decomposition.

Soil microbial respiration is expected to show adaptations to changing temperatures, greatly weakening the magnitude of feedback over time, as shown in labile carbon substrates. However, whether such thermal adaptation persists during long-term soil carbon decomposition as carbon substrates decrease in decomposability remains unknown. Here, we conducted a 6-year incubation experiment in natural and arable soils with distinct properties under three temperatures (10, 20 and 30°C). Mass-specific microbial respiration was consistently lower under higher long-term incubation temperatures, suggesting the occurrence and persistence of microbial thermal adaptation in long-term soil carbon decomposition. Furthermore, changes in microbial community composition and function largely explained the persistence of microbial respiratory thermal adaptation. If such thermal adaptation generally occurs in large low-decomposability carbon pools, warming-induced soil carbon losses may be lower than previously predicted and thus may not contribute as much as expected to greenhouse warming.

Cropland abandonment alleviates soil carbon emissions in the North China Plain.

Land use change could profoundly influence the terrestrial ecosystem carbon (C) cycle. However, the effects of agricultural expansion and cropland abandonment on soil microbial respiration remain controversial, and the underlying mechanisms of the land use change effect are lacking. In this study, we conducted a comprehensive survey in four land use types (grassland, cropland, orchard, and old-field grassland) of North China Plain with eight replicates to explore the responses of soil microbial respiration to agricultural expansion and cropland abandonment. We collected surface soil (0-10 cm in depth) in each land use type to measure soil physicochemical property and microbial analysis. Our results showed that soil microbial respiration was significantly increased by 15.10 mg CO2 kg-1 day-1 and 20.06 mg CO2 kg-1 day-1 due to the conversion of grassland to cropland and orchard, respectively. It confirmed that agricultural expansion might exacerbate soil C emissions. On the contrary, the returning of cropland and orchard to old-field grassland significantly decreased soil microbial respiration by 16.51 mg CO2 kg-1 day-1 and 21.47 mg CO2 kg-1 day-1, respectively. Effects of land use change on soil microbial respiration were predominately determined by soil organic and inorganic nitrogen contents, implying that nitrogen fertilizer plays an essential role in soil C loss. These findings highlight that cropland abandonment can effectively mitigate soil CO2 emissions, which should be implemented in agricultural lands with low grain production and high C emissions. Our results improve mechanistic understanding on the response of soil C emission to land use changes.

The role of soil microbes in the global carbon cycle: tracking the below-ground microbial processing of plant-derived carbon for manipulating carbon dynamics in agricultural systems.

It is well known that atmospheric concentrations of carbon dioxide (CO2) (and other greenhouse gases) have increased markedly as a result of human activity since the industrial revolution. It is perhaps less appreciated that natural and managed soils are an important source and sink for atmospheric CO2 and that, primarily as a result of the activities of soil microorganisms, there is a soil-derived respiratory flux of CO2 to the atmosphere that overshadows by tenfold the annual CO2 flux from fossil fuel emissions. Therefore small changes in the soil carbon cycle could have large impacts on atmospheric CO2 concentrations. Here we discuss the role of soil microbes in the global carbon cycle and review the main methods that have been used to identify the microorganisms responsible for the processing of plant photosynthetic carbon inputs to soil. We discuss whether application of these techniques can provide the information required to underpin the management of agro-ecosystems for carbon sequestration and increased agricultural sustainability. We conclude that, although crucial in enabling the identification of plant-derived carbon-utilising microbes, current technologies lack the high-throughput ability to quantitatively apportion carbon use by phylogentic groups and its use efficiency and destination within the microbial metabolome. It is this information that is required to inform rational manipulation of the plant-soil system to favour organisms or physiologies most important for promoting soil carbon storage in agricultural soil.

In situ simultaneous measuring method for the determination of key processes of soil organic carbon cycling: Soil microbial respiration using laser spectrometry.

RATIONALE: Soil microbial heterotrophic C-CO2 respiration is important for C cycling. Soil CO2 differentiation and quantification are vital for understanding soil C cycling and CO2 emission mitigation. Presently, soil microbial respiration (SR) quantification models are based on native soil organic matter (SOM) and require consistent monitoring of δ13C and CO2. METHODS: We present a new apparatus for achieving in situ soil static chamber incubation and simultaneous CO2 and δ13C monitoring by cavity ring-down spectroscopy (CRDS) coupled with a soil culture and gas introduction module (SCGIM) with multi-channel. After a meticulous five-point inter-calibration, the repeatability of CO2 and δ13C values by using CRDS-SCGIM were determined, and compared with those obtained using gas chromatography (GC) and isotope ratio mass spectrometry (IRMS), respectively. We examined the method regarding quantifying SR with various concentrations and enrichment of glucose and then applied it to investigate the responses of SR to the addition of different exogenous organic materials (glucose and rice residues) into paddy soils during a 21-day incubation. RESULTS: The CRDS-SCGIM CO2 and δ13C measurements were conducted with high precision (< 1.0 µmol/mol and 1‰, respectively). The optimal sampling interval and the amount added were not exceeded 4 h and 200 mg C/100 g dry soil in a 1 L incubation bottle, respectively; the 13C-enrichment of 3%-7% was appropriate. The total SR rates observed were 0.6-4.2 µL/h/g and the exogenous organic materials induced -49%-28% of priming effects in native SOM mineralisation. CONCLUSIONS: Our results show that CRDS-SCGIM is a method suitable for the quantification of soil microbial CO2 respiration, requiring less extensive lab resources than GC/IRMS.

Response of soil C-, N-, and P- acquisition enzymes to moisture pulses in desert grassland to shrubland state transition.

Grassland-shrubland state transition causes profound effects on soil nutrients and microorganisms, yet little is known about how these soil characteristics are influenced by rainfall and litter changes during transition. Here, we examined water (high or low moisture pulse) and litter (grass or shrub) effects on these soil characteristics in grassland-shrubland mosaics consisting of desert grassland (DG), grassland edge (GE), shrubland edge (SE), and shrubland (SL) sites. The results showed that the transition of DG-GE-SE-SL significantly reduced soil moisture, total carbon (C), total nitrogen (N), total phosphorus (P), microbial biomass carbon, and microbial biomass nitrogen, revealing evident soil degradation during this transition. After applying water and litter, soil microbial respiration (SMR) and the activities of all enzymes were promoted to varying degrees among the sites. Specifically, SMR was promoted under a low moisture pulse but suppressed under a high moisture pulse along the transition from DG to SL. Two C-acquisition enzymes, cellobiohydrolase and ß-1,4-glucosidase, became increasingly active from DG to SL. Another C-acquisition enzyme of ß-1,4-xylosidase and an N-acquisition enzyme of leucine aminopeptidase showed the strongest preferences for low moisture pulses in SL. These results indicated that shrub encroachment retained certain microbes with an advanced ability to acquire to C and N from dry and infertile soil in SL. Although a P-acquisition enzyme of alkaline phosphatase showed a decreasing trend along the transition from DG to SL, similar like those C- and N- acquisition enzymes, it was not sensitive to varying moisture levels, suggesting that alkaline phosphatase was affected by other soil physicochemical properties rather than soil moisture. The joint analysis of soil extracellular enzymes and nutrients indicated that microbial biomass carbon played a more important role than other soil characteristics in determining soil extracellular enzyme activities along the transition from DG to SL. Future research on dissecting soil microbial communities is warranted to better understand the microbiological mechanisms behind these phenomena in the shrub encroachment process.

Solar radiation explains litter degradation along alpine elevation gradients better than other climatic or edaphic parameters.

Organic matter (OM) decomposition has been shown to vary across ecosystems, suggesting that variation in local ecological conditions influences this process. A better understanding of the ecological factors driving OM decomposition rates will allow to better predict the effect of ecosystem changes on the carbon cycle. While temperature and humidity have been put forward as the main drivers of OM decomposition, the concomitant role of other ecosystem properties, such as soil physicochemical properties, and local microbial communities, remains to be investigated within large-scale ecological gradients. To address this gap, we measured the decomposition of a standardized OM source - green tea and rooibos tea - across 24 sites spread within a full factorial design including elevation and exposition, and across two distinct bioclimatic regions in the Swiss Alps. By analyzing OM decomposition via 19 climatic, edaphic or soil microbial activity-related variables, which strongly varied across sites, we identified solar radiation as the primary source of variation of both green and rooibos teabags decomposition rate. This study thus highlights that while most variables, such as temperature or humidity, as well as soil microbial activity, do impact decomposition process, in combination with the measured pedo-climatic niche, solar radiation, very likely by means of indirect effects, best captures variation in OM degradation. For instance, high solar radiation might favor photodegradation, in turn speeding up the decomposition activity of the local microbial communities. Future work should thus disentangle the synergistic effects of the unique local microbial community and solar radiation on OM decomposition across different habitats.

Microbial assemblies associated with temperature sensitivity of soil respiration along an altitudinal gradient.

Identifying the drivers of the response of soil microbial respiration to warming is integral to accurately forecasting the carbon-climate feedbacks in terrestrial ecosystems. Microorganisms are the fundamental drivers of soil microbial respiration and its response to warming; however, the specific microbial communities and properties involved in the process remain largely undetermined. Here, we identified the associations between microbial community and temperature sensitivity (Q10) of soil microbial respiration in alpine forests along an altitudinal gradient (from 2974 to 3558 m) from the climate-sensitive Tibetan Plateau. Our results showed that changes in microbial community composition accounted for more variations of Q10 values than a wide range of other factors, including soil pH, moisture, substrate quantity and quality, microbial biomass, diversity and enzyme activities. Specifically, co-occurring microbial assemblies (i.e., ecological clusters or modules) targeting labile carbon consumption were negatively correlated with Q10 of soil microbial respiration, whereas microbial assemblies associated with recalcitrant carbon decomposition were positively correlated with Q10 of soil microbial respiration. Furthermore, there were progressive shifts of microbial assemblies from labile to recalcitrant carbon consumption along the altitudinal gradient, supporting relatively high Q10 values in high-altitude regions. Our results provide new insights into the link between changes in major microbial assemblies with different trophic strategies and Q10 of soil microbial respiration along an altitudinal gradient, highlighting that warming could have stronger effects on microbially-mediated soil organic matter decomposition in high-altitude regions than previously thought.

Ant nests as a microbial hot spots in a long-term heavy metal-contaminated soils.

Interactions between soil fauna and soil microorganisms are not fully recognized, especially in extreme environments, such as long-term metal-polluted soils. The purpose of the study was to assess how the presence of Lasius niger ants affected soil microbial characteristics in a long-term metal-polluted area (Upper Silesia in Poland). Paired soil samples were taken from bulk soil and from ant nests and analysed for a range of soil physicochemical properties, including metal content (zinc, cadmium, and lead). Microbial analysis included soil microbial activity (soil respiration rate), microbial biomass (substrate-induced respiration rate), and bacteria catabolic properties (Biolog® ECO plates). Soil collected from ant nests was drier and was characterized by a lower content of organic matter, carbon and nitrogen contents, and also lower metal content than bulk soil. Soil microbial respiration rate was positively related to soil pH (p = 0.01) and negatively to water-soluble metal content, integrated into TIws index (p = 0.01). Soil microbial biomass was negatively related to TIws index (p = 0.04). Neither soil microbial activity and biomass nor bacteria catabolic activity and diversity indices differed between bulk soil and ant nests. Taken together, ant activity reduced soil contamination by metals in a microscale which support microbial community activity and biomass but did not affect Biolog® culturable bacteria.

[Effect of Environmental Factors on Variation Characteristics of Soil Microbial Respiration and Its Temperature Sensitivity].

Studying the effect of environmental factors on the variation of soil microbial respiration and its temperature sensitivity (Q10) at different time scales under field conditions is of great significance for accurately understanding the region's climate warming potential. From March 2008 to November 2013, in situ soil microbial respiration rates were determined using an automated CO2 flux system (Li~8100) in long-term bare fallow soil at the Changwu State Key Agro-Ecosystem Experimental Station, Shaanxi, China, for studying the effect of environmental factors on the variation of soil microbial respiration and Q10 at different time scales. At diurnal time scales, the daily variation of soil microbial respiration rates showed a single-peak curve, which was closely related to soil temperature (P<0.05); whereas the daily mean soil microbial respiration rate and Q10 varied with soil moisture, with both showing the order of moderate soil moisture conditions > higher soil moisture conditions > lower soil moisture conditions[daily mean soil microbial respiration rate:1.20 µmol·(m2·s)-1 vs. 0.95 µmol·(m2·s)-1 vs. 0.79 µmol·(m2·s)-1; Q10:2.12 vs. 1.93 vs. 1.59]. At seasonal time scales, both the seasonal mean soil microbial respiration rate and Q10 showed the order of rainy season > non-rainy season[seasonal mean soil microbial respiration rate:1.11 µmol·(m2·s)-1vs. 0.90 µmol·(m2·s)-1; Q10:1.96 vs. 1.59], which was consistent with the trend of soil temperature and moisture (soil temperature:20.39 vs. 14.50℃; soil moisture:49.2% vs. 38.6%). The bivariate model of soil temperature and soil moisture could explain the greater seasonal variability of the soil microbial respiration rate than did the univariate model of soil temperature or soil moisture (R2:0.45-0.82 vs. 0.32-0.67 vs. 0.35-0.86; the fitting coefficient between the simulated and measured soil microbial respiration rates:0.76 vs. 0.64 vs. 0.58). At annual time scales, the annual cumulative soil microbial respiration ranged from 226 to 298 g·(m2·a)-1, with an average of 253 g·(m2·a)-1, and the annual Q10 ranged from 1.48 to 1.94, with an average of 1.70. The annual cumulative soil microbial respiration and Q10 showed a negative quadratic correlation with annual mean soil moisture (P<0.05), with the annual mean soil moisture explaining 39% and 54% of the annual variability of annual cumulative soil microbial respiration and Q10, respectively. In the bare soil treatment, the soil organic carbon decreased from 6.5 g·kg-1 at the beginning of the experiment to 5.5 g·kg-1 at present; whereas, the annual cumulative soil microbial respiration was up to 255 g·(m2·a)-1 and the loss of annual cumulative soil microbial respiration was 20 times larger than the loss of soil organic carbon in the Loess Plateau region, China.

The sensitivity of soil microbial respiration declined due to crop straw addition but did not depend on the type of crop straw.

An incubation experiment was conducted to investigate whether the type of crop straw added to soil influenced the temperature sensitivity of soil microbial respiration. The soil for incubation was collected from a winter wheat-soybean rotation cropland. Five temperature levels (5, 10, 15, 20, and 25 °C), five crop straw types (soybean, peanut, rice, winter wheat, and maize), and a control (CK, no crop straw addition) were established. Soil microbial respiration rates were measured on days 1, 2, 3, 5, 7, 10, 14, 20, and 27 after crop straw addition using an infrared CO2 analyser. Soil enzyme activities of invertase, urea, and catalase and the dissolved organic carbon (DOC) content were measured after incubation. Estimated Q10 (temperature sensitivity of soil microbial respiration) ranged from 1.472 ± 0.045 to 1.970 ± 0.020 and showed no significant (P > 0.05) difference between straw addition treatments, but there was significantly (P < 0.001) higher temperature sensitivity (1.970 ± 0.020) for CK. A significant (P = 0.002) relationship was found between the Q10 of cumulative soil microbial respiration and basal soil microbial respiration (soil microbial respiration at 0 °C). Moreover, a marginally significant (P < 0.1) relationship was found between the Q10 at different incubation stages and basal soil microbial respiration. A quadratic function was used to explain the relationship between estimated basal microbial respiration and the lignin content. Soil microbial respiration was positively correlated with the activities of invertase, urease, and catalase and the dissolved organic carbon (DOC) content in all treatments. This study indicated that crop straw addition significantly (P < 0.001) reduced the Q10 of soil microbial respiration and that the types of crop straw added to soil did not significantly (P > 0.05) change the Q10 value.

[Response of Soil Respiration to Extreme Precipitation in Semi-arid Regions].

Evaluating the response of soil microbial respiration to extreme precipitation event is significant for a better understanding about the influence of the change of precipitation regime on soil carbon cycling under global warming. A simulated experiment of extreme precipitations was conducted during the rainy season (July-September 2015) in the Changwu State Key Agro-Ecological Station, Shaanxi, China. The treatments consisted of three total precipitations in rainy season (600 mm, 300 mm, and 150 mm) and two precipitation regimes (10 mm, 150 mm; P10, P150). Soil microbial respiration varied differently in the same single rainfall event among three precipitations. The variation coefficient of soil microbial respiration under 600 mm total precipitation was 36% (P150) and 33% (P10), and 28% and 22% under 300 mm total precipitation, 43% and 29% under 150 mm total precipitation. Under 600 mm total precipitation, the cumulative soil microbial respiration under P150 was 20% less than that under P10; however, the cumulative soil respiration of P150 under 150 mm total precipitation was 22% more than that under P10; and there was no significant difference between P10 and P150 under 300 mm total precipitation. Therefore, the duration in soil water stress must be considered to estimate soil microbial respirations under extreme precipitations.

The Effects of Heavy Metals and Total Petroleum Hydrocarbons on Soil Bacterial Activity and Functional Diversity in the Upper Silesia Industrial Region (Poland).

Various inorganic and organic pollutants in industrial soils may adversely affect soil microorganisms and terrestrial ecosystem functioning. The aim of the study was to explore the relationship between the microbial activity, microbial biomass, and functional diversity of soil bacteria and the metals and total petroleum hydrocarbons (TPHs) in the Upper Silesian Industrial Region (Poland). We collected soil samples in pine-dominated forest stands and analyzed them according to a range of soil physicochemical properties, including metal content (cadmium, lead, and zinc) and TPH content. Metal concentrations were normalized to their toxicity to soil microorganisms and integrated in a toxicity index (TI). Soil microbial activity measured as soil respiration rate, microbial biomass measured as substrate-induced respiration rate, and the bacterial catabolic activity (area under the curve, AUC) assessed using Biolog® ECO plates were negatively related to TPH pollution as shown in multiple regressions. The canonical correspondence analysis (CCA) showed that both TPH and TI affected the community-level physiological profiles (CLPPs) of soil bacteria and the pollutants' effects were much stronger than the effects of other soil properties, including nutrient content.

Biological attributes of rehabilitated soils contaminated with heavy metals.

This study aimed to evaluate the effects of two rehabilitation systems in sites contaminated by Zn, Cu, Pb, and Cd on biological soil attributes [microbial biomass carbon (Cmic), basal and induced respiration, enzymatic activities, microorganism plate count, and bacterial and fungal community diversity and structure by denaturing gradient gel electrophoresis (DGGE)]. These systems (S1 and S2) consisted of excavation (trenching) and replacement of contaminated soil by uncontaminated soil in rows with Eucalyptus camaldulensis planting (S1-R and S2-R), free of understory vegetation (S1-BR), or completely covered by Brachiaria decumbens (S2-BR) in between rows. A contaminated, non-rehabilitated (NR) site and two contamination-free sites [Cerrado (C) and pasture (P)] were used as controls. Cmic, densities of bacteria and actinobacteria, and enzymatic activities (ß-glucosidase, acid phosphatase, and urease) were significantly higher in the rehabilitated sites of system 2 (S2-R and S2-BR). However, even under high heavy metal contents (S1-R), the rehabilitation with eucalyptus was also effective. DGGE analysis revealed similarity in the diversity and structure of bacteria and fungi communities between rehabilitated sites and C site (uncontaminated). Principal component analysis showed clustering of rehabilitated sites (S2-R and S2-BR) with contamination-free sites, and S1-R was intermediate between the most and least contaminated sites, demonstrating that the soil replacement and revegetation improved the biological condition of the soil. The attributes that most explained these clustering were bacterial density, acid phosphatase, ß-glucosidase, fungal and actinobacterial densities, Cmic, and induced respiration.

Contrasting effects of two antimicrobial agents (triclosan and triclocarban) on biomineralisation of an organophosphate pesticide in soils.

We examined the impact of triclosan (TCS) and triclocarban (TCC) antimicrobial compounds on the biomineralisation of glucose and cadusafos pesticide in three Australian soils. Mineralisations of radiolabelled ((14)C) compounds were measured over a period of up to 77 d in sterile and non-sterile soils treated with different concentrations of TCS and TCC (0-450 mg kg(-1)). The rates of mineralisation of cadusafos were found to decrease with increasing concentration of TCS in all soils, but varied with soil type. Soils treated with TCS at the highest concentration (270 mg kg(-1)) reduced cadusafos mineralisation by up to 58%. However, glucose mineralisation was not significantly affected by the presence of TCS. While TCS, significantly reduced the mineralisation of cadusafos (by 17%; p<0.05) even at the lowest studied concentration (30 mg kg(-1)), no significant effect of TCC was observed on cadusafos or glucose mineralisation even at the highest concentration used (450 mg kg(-1)).