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1.
Am J Epidemiol ; 190(6): 1148-1158, 2021 06 01.
Artigo em Inglês | MEDLINE | ID: mdl-33404048

RESUMO

Previous research has demonstrated the usefulness of hierarchical modeling for incorporating a flexible array of prior information in genetic association studies. When this prior information consists of estimates from association analyses of single-nucleotide polymorphisms (SNP)-intermediate or SNP-gene expression, a hierarchical model is equivalent to a 2-stage instrumental or transcriptome-wide association study (TWAS) analysis, respectively. We propose to extend our previous approach for the joint analysis of marginal summary statistics to incorporate prior information via a hierarchical model (hJAM). In this framework, the use of appropriate estimates as prior information yields an analysis similar to Mendelian randomization (MR) and TWAS approaches. hJAM is applicable to multiple correlated SNPs and intermediates to yield conditional estimates for the intermediates on the outcome, thus providing advantages over alternative approaches. We investigated the performance of hJAM in comparison with existing MR and TWAS approaches and demonstrated that hJAM yields an unbiased estimate, maintains correct type-I error, and has increased power across extensive simulations. We applied hJAM to 2 examples: estimating the causal effects of body mass index (GIANT Consortium) and type 2 diabetes (DIAGRAM data set, GERA Cohort, and UK Biobank) on myocardial infarction (UK Biobank) and estimating the causal effects of the expressions of the genes for nuclear casein kinase and cyclin dependent kinase substrate 1 and peptidase M20 domain containing 1 on the risk of prostate cancer (PRACTICAL and GTEx).


Assuntos
Interpretação Estatística de Dados , Perfilação da Expressão Gênica/métodos , Análise da Randomização Mendeliana/métodos , Modelos Genéticos , Amidoidrolases/análise , Viés , Índice de Massa Corporal , Diabetes Mellitus Tipo 2/genética , Feminino , Estudo de Associação Genômica Ampla , Humanos , Masculino , Infarto do Miocárdio/genética , Proteínas Nucleares/análise , Fosfoproteínas/análise , Polimorfismo de Nucleotídeo Único , Neoplasias da Próstata/genética
2.
Int J Legal Med ; 134(3): 953-961, 2020 May.
Artigo em Inglês | MEDLINE | ID: mdl-32055939

RESUMO

In recent years, a lot of age prediction models based on different CpG motives in different cell types were published determining the biological age of a person by DNA methylation. For a general employment of this technique, maybe even as a routine method, the cross-laboratory application of such models has to be examined. Therefore, we tested two different published age prediction models for blood and mouth swab samples with regard to prediction accuracy (Bekaert et al Epigenetics 10:922-930, 2015a; Bekaert et al Forensic Sci Int Genet Suppl Ser 5:e144-e145, 2015b). Both models are based on CpG sites of four genes (ASPA, EDARADD, PDE4-C, and ELOVL2), but with a different combination of CpGs for the two tissue types. A mean absolute difference (MAD) between chronological and predicted age of 9.84 and 8.32 years for blood and buccal swab models could be demonstrated, respectively, which is significantly worse than the published data, probably due to higher DNA methylation variances in some CpGs. By retraining both prediction models, the prediction accuracy could be improved to a MAD of 5.55 and 4.65 years for the renewed blood and buccal swab model, respectively. This study demonstrates the usefulness of effective DNA standards to normalize DNA methylation data for better comparison of study results.


Assuntos
Envelhecimento/genética , Ilhas de CpG , Metilação de DNA , Genética Forense/métodos , Marcadores Genéticos , Amidoidrolases/análise , Análise Química do Sangue , Nucleotídeo Cíclico Fosfodiesterase do Tipo 4/análise , Proteína de Domínio de Morte Associada a Edar/análise , Elongases de Ácidos Graxos/análise , Humanos , Laboratórios , Valor Preditivo dos Testes , Saliva/química
3.
Bioorg Med Chem Lett ; 30(21): 127513, 2020 11 01.
Artigo em Inglês | MEDLINE | ID: mdl-32860981

RESUMO

Fatty acid amide hydrolase (FAAH) exerts its main function in the catabolism of the endogenous chemical messenger anandamide (AEA), thus modulating the endocannabinoid (eCB) pathway. Inhibition of FAAH may serve as an effective strategy to relieve anxiety and possibly other central nervous system (CNS)-related disorders. Positron emission tomography (PET) would facilitate us to better understand the relationship between FAAH in certain disease conditions, and accelerate clinical translation of FAAH inhibitors by providing in vivo quantitative information. So far, most PET tracers show irreversible binding patterns with FAAH, which would result in complicated quantitative processes. Herein, we have identified a new FAAH inhibitor (1-((1-methyl-1H-indol-2-yl)methyl)piperidin-4-yl)(oxazol-2-yl)methanone (8) which inhibits the hydrolysis of AEA in the brain with high potency (IC50 value 11 nM at a substrate concentration of 0.5 µM), and without showing time-dependency. The PET tracer [11C]8 (also called [11C]FAAH-1906) was successfully radiolabeled with [11C]MeI in 17 ± 6% decay-corrected radiochemical yield (n = 7) with >74.0 GBq/µmol (2 Ci/µmol) molar activity and >99% radiochemical purity. Ex vivo biodistribution and blocking studies of [11C]8 in normal mice were also conducted, indicating good brain penetration, high brain target selectivity, and modest to excellent target selectivity in peripheral tissues. Thus, [11C]8 is a potentially useful PET ligand with enzyme inhibitory and target binding properties consistent with a reversible mode of action.


Assuntos
Amidoidrolases/antagonistas & inibidores , Encéfalo/efeitos dos fármacos , Compostos Heterocíclicos/farmacologia , Tomografia por Emissão de Pósitrons , Amidoidrolases/análise , Amidoidrolases/metabolismo , Animais , Encéfalo/enzimologia , Relação Dose-Resposta a Droga , Compostos Heterocíclicos/síntese química , Compostos Heterocíclicos/química , Hidrólise , Ligantes , Estrutura Molecular , Ratos , Relação Estrutura-Atividade
4.
Appl Microbiol Biotechnol ; 103(2): 893-902, 2019 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-30421106

RESUMO

It is generally considered that bile salt hydrolase (BSH) activity is hardly detected in nonintestinal lactic acid bacteria (LAB). The aim of this study was to investigate the distribution and intensity of BSH activity in LAB isolated from naturally fermented vegetables and milk. A total of 624 lactic acid bacterial strains classified into 6 genera and 50 species were isolated from 144 naturally fermented vegetable samples and 103 naturally fermented milk samples, and their BSH activity was screened by gas chromatography with electron capture detection. The BSH-positive strains were further analyzed quantitatively for their deconjugation ability against six human-conjugated bile salts by HPLC based on the disappearance of the conjugated bile salts from the reaction mixture. The results showed that 39% of the strains possessed BSH activity distributed in 24 lactic acid bacterial species. The strains of the fermented vegetable origin showed a 0.5-fold higher incidence of BSH-positive strains than those of the fermented milk origin, and the lactic acid bacilli exhibited 2.5-fold higher incidence of BSH-positive strains than the lactic acid cocci in general. The strains of the fermented vegetable origin generally had greater bile salt deconjugation ability than those of the fermented milk origin. More than 97% and 93% of the BSH-positive strains exhibited a greater substrate preference for glycoconjugated bile salts than tauroconjugated bile salts and for dihydroxy bile salts than trihydroxy bile salts, respectively. This study demonstrated that BSH activity was also present in nonintestinal LAB.


Assuntos
Amidoidrolases/análise , Lactobacillales/enzimologia , Ácidos e Sais Biliares/metabolismo , Laticínios/microbiologia , Hidrólise , Lactobacillales/classificação , Lactobacillales/isolamento & purificação , Verduras/microbiologia
5.
Int J Mol Sci ; 20(16)2019 Aug 09.
Artigo em Inglês | MEDLINE | ID: mdl-31404995

RESUMO

The enzyme vascular non-inflammatory molecule-1 (vanin 1) is highly expressed at gene and protein level in many organs, such as the liver, intestine, and kidney. Its major function is related to its pantetheinase activity; vanin 1 breaks down pantetheine in cysteamine and pantothenic acid, a precursor of coenzyme A. Indeed, its physiological role seems strictly related to coenzyme A metabolism, lipid metabolism, and energy production. In recent years, many studies have elucidated the role of vanin 1 under physiological conditions in relation to oxidative stress and inflammation. Vanin's enzymatic activity was found to be of key importance in certain diseases, either for its protective effect or as a sensitizer, depending on the diseased organ. In this review, we discuss the role of vanin 1 in the liver, kidney, intestine, and lung under physiological as well as pathophysiological conditions. Thus, we provide a more complete understanding and overview of its complex function and contribution to some specific pathologies.


Assuntos
Amidoidrolases/metabolismo , Estresse Oxidativo , Amidoidrolases/análise , Animais , Proteínas Ligadas por GPI/análise , Proteínas Ligadas por GPI/metabolismo , Humanos , Inflamação/metabolismo , Inflamação/fisiopatologia , Enteropatias/metabolismo , Enteropatias/fisiopatologia , Intestinos/fisiopatologia , Rim/metabolismo , Rim/fisiopatologia , Nefropatias/metabolismo , Nefropatias/fisiopatologia , Fígado/metabolismo , Fígado/fisiopatologia , Hepatopatias/metabolismo , Hepatopatias/fisiopatologia
6.
Anal Chem ; 90(15): 9545-9550, 2018 08 07.
Artigo em Inglês | MEDLINE | ID: mdl-29976064

RESUMO

Pantetheinase, a glycosylphosphatidylinositol (GPI) anchored enzyme, overexpresses in intestine, liver, and kidney with various biological functions such as its linkage to the inflammation and some metabolic diseases. It can hydrolyze pantetheine to cysteamine, an antioxidant, and pantothenic acid (Vitamin B5) that is an essential component of coenzyme A (CoA). Until now, very few analytic methods were developed for this enzyme, hampering the further investigation of its biological functions. In this work, we report the design, synthesis, and biological examination of a highly sensitive bioluminogenic probe for pantetheinase with a limit of detection of 1.14 ng/mL. Furthermore, animal experiments validated that our probe can be applied to detect the endogenous pantetheinase activity. To the best of our knowledge, this is the first bioluminogenic probe achieving the detection of pantetheinase level in vivo.


Assuntos
Amidoidrolases/análise , Substâncias Luminescentes/química , Medições Luminescentes/métodos , Imagem Óptica/métodos , Ácido Pantotênico/análogos & derivados , Inanição , Amidoidrolases/metabolismo , Animais , Linhagem Celular , Proteínas Ligadas por GPI/análise , Proteínas Ligadas por GPI/metabolismo , Humanos , Camundongos Endogâmicos C57BL , Camundongos Transgênicos , Regulação para Cima
7.
Biochim Biophys Acta Gen Subj ; 1862(7): 1644-1655, 2018 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-29660372

RESUMO

BACKGROUND: Heparan sulfate (HS) 3-O-sulfation can be catalysed by seven 3-O-sulfotransferases (HS3STs) in humans, still it is the rarest modification in HS and its biological function is yet misunderstood. HS3ST2 and HS3ST3B exhibit the same activity in vitro. They are however differently expressed in macrophages depending on cell environment, which suggests that they may be involved in distinct cellular processes. Here, we hypothesized that both isozymes might also display distinct subcellular localizations. METHODS: The subcellular distribution of HS3ST2 and HS3ST3B was analysed by using overexpression systems in HeLa cells. The localization of endogenous HS3ST2 was confirmed by immunostaining in primary macrophages. RESULTS: We found that HS3ST3B was only localized in the Golgi apparatus and no difference between full-length enzyme and truncated construct depleted of its catalytic domain was observed. In contrast, HS3ST2 was clearly visualized at the plasma membrane. Its truncated form remained in the Golgi apparatus, meaning that the catalytic domain might support correct addressing of HS3ST2 to cell surface. Moreover, we found a partial co-localization of HS3ST2 with syndecan-2 in HeLa cells and primary macrophages. Silencing the expression of this proteoglycan altered the localization of HS3ST2, which suggests that syndecan-2 is required to address the isozyme outside of the Golgi apparatus. CONCLUSIONS: We demonstrated that HS3ST3B is a Golgi-resident isozyme, while HS3ST2 is addressed to the plasma membrane with syndecan-2. GENERAL SIGNIFICANCE: The membrane localization of HS3ST2 suggests that this enzyme may participate in discrete processes that occur at the cell surface.


Assuntos
Amidoidrolases/análise , Membrana Celular/enzimologia , Macrófagos/enzimologia , Proteínas de Membrana/análise , Sulfotransferases/análise , Amidoidrolases/genética , Células Cultivadas , Complexo de Golgi/enzimologia , Células HEK293 , Células HeLa , Humanos , Isoenzimas/análise , Proteínas de Membrana/genética , Microscopia de Fluorescência , Monócitos/citologia , RNA Interferente Pequeno/genética , Reação em Cadeia da Polimerase em Tempo Real , Frações Subcelulares/enzimologia , Sulfotransferases/genética , Sindecana-2/análise
8.
Crit Care ; 22(1): 336, 2018 12 11.
Artigo em Inglês | MEDLINE | ID: mdl-30538005

RESUMO

BACKGROUND: Dimethylarginine dimethylaminohydrolase 2 (DDAH2) regulates the synthesis of nitric oxide (NO) through the metabolism of the endogenous inhibitor of nitric oxide synthase, asymmetric dimethylarginine (ADMA). Pilot studies have associated the rs805305 SNP of DDAH2 with ADMA concentrations in sepsis. This study explored the impact of the rs805305 polymorphism on DDAH activity and outcome in septic shock. METHODS: We undertook a secondary analysis of data and samples collected during the Vasopressin versus noradrenaline as initial therapy in septic shock (VANISH) trial. Plasma and DNA samples isolated from 286 patients recruited into the VANISH trial were analysed. Concentrations of L-Arginine and the methylarginines ADMA and symmetric dimethylarginine (SDMA) were determined from plasma samples. Whole blood and buffy-coat samples were genotyped for polymorphisms of DDAH2. Clinical data collected during the study were used to explore the relationship between circulating methylarginines, genotype and outcome. RESULTS: Peak ADMA concentration over the study period was associated with a hazard ratio for death at 28 days of 3.3 (95% CI 2.0-5.4), p < 0.001. Reduced DDAH activity measured by an elevated ADMA:SDMA ratio was associated with a reduced risk of death in septic shock (p = 0.03). The rs805305 polymorphism of DDAH2 was associated with reduced DDAH activity (p = 0.004) and 28-day mortality (p = 0.02). Mean SOFA score and shock duration were also reduced in the less common G:G genotype compared to heterozygotes and C:C genotype patients (p = 0.04 and p = 0.02, respectively). CONCLUSIONS: Plasma ADMA is a biomarker of outcome in septic shock, and reduced DDAH activity is associated with a protective effect. The polymorphism rs805305 SNP is associated with reduced mortality, which is potentially mediated by reduced DDAH2 activity. TRIAL REGISTRATION: ISRCTN Registry, ISRCTN20769191 . Registered on 20 September 2012.


Assuntos
Amidoidrolases/análise , Substâncias Protetoras/análise , Choque Séptico/enzimologia , Amidoidrolases/sangue , Arginina/análogos & derivados , Arginina/análise , Arginina/sangue , Biomarcadores/análise , Biomarcadores/sangue , Humanos , Escores de Disfunção Orgânica , Polimorfismo de Nucleotídeo Único/fisiologia , Choque Séptico/mortalidade , Choque Séptico/fisiopatologia , Estatísticas não Paramétricas , Fatores de Tempo
9.
Anal Chem ; 89(22): 12527-12532, 2017 11 21.
Artigo em Inglês | MEDLINE | ID: mdl-29076721

RESUMO

Process analytical technologies (PAT) are used within industry to give real-time measurements of critical quality parameters, ultimately improving the quality by design (QbD) of the final product and reducing manufacturing costs. Spectroscopic and spectrophotometric methods are readily employed within PAT due to their ease of use, compatibility toward a range of sample types, robustness, and multiplexing capabilities. We have developed a UV resonance Raman (UVRR) spectroscopy approach to quantify industrially relevant biotransformations accurately, focusing on nitrile metabolizing enzymes: nitrile hydratase (NHase) and amidase versus nitrilase activity. Sensitive detection of the amide intermediate by UVRR spectroscopy enabled discrimination between the two nitrile-hydrolyzing pathways. Development of a flow-cell apparatus further exemplifies its suitability toward PAT measurements, incorporating in situ analysis within a closed system. Multivariate curve resolution-alternating least-squares (MCR-ALS) was applied to the UVRR spectra, as well as off-line HPLC measurements, to enable absolute quantification of substrate, intermediate, and product. Further application of hard modeling to MCR-ALS deconvolved concentration profiles enabled accurate kinetic determinations, thus removing the requirement for comparative off-line HPLC. Finally, successful quantitative measurements of in vivo activity using whole-cell biotransformations, where two Escherichia coli strains expressing either NHase (transforming benzonitrile to benzamide) or amidase (further conversion of benzamide to benzoic acid), illustrate the power, practicality, and sensitivity of this novel approach of multistep and, with further refinement, we believe, multiple micro-organism biotransformations.


Assuntos
Amidoidrolases/análise , Aminoidrolases/análise , Escherichia coli/citologia , Hidroliases/análise , Amidoidrolases/metabolismo , Aminoidrolases/metabolismo , Biotransformação , Escherichia coli/metabolismo , Hidroliases/metabolismo , Espectrofotometria Ultravioleta , Análise Espectral Raman , Fatores de Tempo
10.
Anal Chem ; 89(20): 11107-11112, 2017 10 17.
Artigo em Inglês | MEDLINE | ID: mdl-28911222

RESUMO

Pantetheinase, which catalyzes the cleavage of pantetheine to pantothenic acid (vitamin B5) and cysteamine, is involved in the regulation of oxidative stress, pantothenate recycling and cell migration. However, further elucidating the cellular function of this enzyme is largely limited by the lack of a suitable fluorescence imaging probe. By conjugating pantothenic acid with cresyl violet, herein we develop a new fluorescence probe CV-PA for the assay of pantetheinase. The probe not only possesses long analytical wavelengths but also displays linear ratiometric (I628/582 nm) fluorescence response to pantetheinase in the range of 5-400 ng/mL with a detection limit of 4.7 ng/mL. This probe has been used to evaluate the efficiency of different inhibitors and quantitatively detect pantetheinase in serum samples, revealing that pantetheinase in fetal bovine serum and new born calf serum is much higher than that in normal human serum. Notably, with the probe the ratiometric imaging and in situ quantitative comparison of pantetheinase in different living cells (LO2 and HK-2) have been achieved for the first time. It is found that the level of pantetheinase in LO2 cells is much larger than that in HK-2 cells, as further validated by Western blot analysis. The proposed probe may be useful to better understand the specific function of pantetheinase in the pantetheinase-related pathophysiological processes.


Assuntos
Amidoidrolases/análise , Corantes Fluorescentes/química , Microscopia Confocal , Amidoidrolases/sangue , Amidoidrolases/metabolismo , Benzoxazinas/química , Linhagem Celular , Cisteamina/metabolismo , Proteínas Ligadas por GPI/análise , Proteínas Ligadas por GPI/sangue , Proteínas Ligadas por GPI/metabolismo , Humanos , Limite de Detecção , Panteteína/metabolismo , Ácido Pantotênico/química , Ácido Pantotênico/metabolismo , Espectrometria de Fluorescência
11.
Crit Care ; 21(1): 189, 2017 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-28709458

RESUMO

BACKGROUND: Nitric oxide (NO) regulates processes involved in sepsis progression, including vascular function and pathogen defense. Direct NO measurement in patients is unfeasible because of its short half-life. Surrogate markers for NO bioavailability are substrates of NO generating synthase (NOS): L-arginine (lArg) and homoarginine (hArg) together with the inhibitory competitive substrate asymmetric dimethylarginine (ADMA). In immune cells ADMA is cleaved by dimethylarginine-dimethylaminohydrolase-2 (DDAH2). The aim of this study was to investigate whether concentrations of surrogate markers for NO bioavailability are associated with sepsis severity. METHOD: This single-center, prospective study involved 25 controls and 100 patients with surgical trauma (n = 20), sepsis (n = 63), or septic shock (n = 17) according to the Sepsis-3 definition. Plasma lArg, hArg, and ADMA concentrations were measured by mass spectrometry and peripheral blood mononuclear cells (PBMCs) were analyzed for DDAH2 expression. RESULTS: lArg concentrations did not differ between groups. Median (IQR) hArg concentrations were significantly lower in patient groups than controls, being 1.89 (1.30-2.29) µmol/L (P < 0.01), with the greatest difference in the septic shock group, being 0.74 (0.36-1.44) µmol/L. In contrast median ADMA concentrations were significantly higher in patient groups compared to controls, being 0.57 (0.46-0.65) µmol/L (P < 0.01), with the highest levels in the septic shock group, being 0.89 (0.56-1.39) µmol/L. The ratio of hArg:ADMA was inversely correlated with disease severity as determined by the Sequential Organ Failure Assessment (SOFA) score. Receiver-operating characteristic analysis for the presence or absence of septic shock revealed equally high sensitivity and specificity for the hArg:ADMA ratio compared to the SOFA score. DDAH2 expression was lower in patients than controls and lowest in the subgroup of patients with increasing SOFA. CONCLUSIONS: In patients with sepsis, plasma hArg concentrations are decreased and ADMA concentrations are increased. Both metabolites affect NO metabolism and our findings suggest reduced NO bioavailability in sepsis. In addition, reduced expression of DDAH2 in immune cells was observed and may not only contribute to blunted NO signaling but also to subsequent impaired pathogen defense.


Assuntos
Óxido Nítrico/metabolismo , Sepse/induzido quimicamente , Adulto , Idoso , Amidoidrolases/análise , Amidoidrolases/sangue , Arginina/análogos & derivados , Arginina/análise , Arginina/sangue , Biomarcadores/análise , Biomarcadores/sangue , Feminino , Homoarginina/análise , Homoarginina/sangue , Humanos , Masculino , Pessoa de Meia-Idade , Óxido Nítrico Sintase/metabolismo , Escores de Disfunção Orgânica , Estudos Prospectivos , Sepse/fisiopatologia , Índice de Gravidade de Doença
12.
Int J Mol Sci ; 18(10)2017 Sep 30.
Artigo em Inglês | MEDLINE | ID: mdl-28973979

RESUMO

High salt intake has been related to the development to chronic kidney disease (CKD) as well as hypertension. In its early stages, symptoms of CKD are usually not apparent, especially those that are induced in a "silent" manner in normotensive individuals, thereby providing a need for some kind of urinary biomarker to detect injury at an early stage. Because traditional renal biomarkers such as serum creatinine are insensitive, it is difficult to detect kidney injury induced by a high-salt diet, especially in normotensive individuals. Recently, several new biomarkers for damage of renal tubular epithelia such as neutrophil gelatinase-associated lipocalin (NGAL) and kidney injury molecule-1 (Kim-1) have been identified. Previously, we found a novel renal biomarker, urinary vanin-1, in several animal models with renal tubular injury. However, there are few studies about early biomarkers of the progression to CKD associated with a high-salt diet. This review presents some new insights about these novel biomarkers for CKD in normotensives and hypertensives under a high salt intake. Interestingly, our recent reports using spontaneously hypertensive rats (SHR) and normotensive Wistar Kyoto rats (WKY) fed a high-salt diet revealed that urinary vanin-1 and NGAL are earlier biomarkers of renal tubular damage in SHR and WKY, whereas urinary Kim-1 is only useful as a biomarker of salt-induced renal injury in SHR. Clinical studies will be needed to clarify these findings.


Assuntos
Insuficiência Renal Crônica/diagnóstico , Insuficiência Renal Crônica/etiologia , Cloreto de Sódio na Dieta/efeitos adversos , Amidoidrolases/análise , Amidoidrolases/urina , Animais , Biomarcadores/análise , Biomarcadores/urina , Proteínas Ligadas por GPI/análise , Proteínas Ligadas por GPI/urina , Receptor Celular 1 do Vírus da Hepatite A/análise , Humanos , Hipertensão/complicações , Hipertensão/diagnóstico , Hipertensão/etiologia , Hipertensão/urina , Túbulos Renais/patologia , Lipocalina-2/análise , Lipocalina-2/urina , Insuficiência Renal Crônica/complicações , Insuficiência Renal Crônica/urina
13.
Anal Chem ; 88(24): 12161-12168, 2016 12 20.
Artigo em Inglês | MEDLINE | ID: mdl-28193016

RESUMO

Reagents that allows detection and monitoring of crucial biomarkers with luminescence ON response have significance in clinical diagnostics. A new coumarin derivative is reported here, which could be used for specific and efficient chemodosimetric detection of cysteine, an important biomarker. The probe is successfully used for studying the biochemical transformation of N-acetylcysteine, a commonly prescribed Cys supplement drug to Cys by aminoacylase-1 (ACY-1), an important and endogenous mammalian enzyme. The possibility of using this reagent for quantification of ACY-1 in blood serum samples is also explored. Nontoxic nature and cell membrane permeability are key features of this probe and are ideally suited for imaging intracellular Cys in normal and cancerous cell lines. Our studies have also revealed that this reagent could be utilized as a redox switch to monitor the hydrogen-peroxide-induced oxidative stress in living SW480 cell lines. Peroxide-mediated cysteine oxidation has a special significance for understanding the cellular-signaling events.


Assuntos
Amidoidrolases/sangue , Cumarínicos/química , Cisteína/análise , Corantes Fluorescentes/química , Estresse Oxidativo , Amidoidrolases/análise , Amidoidrolases/metabolismo , Linhagem Celular Tumoral , Cisteína/metabolismo , Ensaios Enzimáticos/métodos , Células HEK293 , Humanos , Peróxido de Hidrogênio/metabolismo , Imagem Óptica/métodos , Espectrometria de Fluorescência/métodos
14.
Appl Environ Microbiol ; 82(14): 4145-54, 2016 07 15.
Artigo em Inglês | MEDLINE | ID: mdl-27208131

RESUMO

UNLABELLED: Quorum sensing, the bacterial cell-cell communication by small molecules, controls important processes such as infection and biofilm formation. Therefore, it is a promising target with several therapeutic and technical applications besides its significant ecological relevance. Enzymes inactivating N-acyl-l-homoserine lactones, the most common class of communication molecules among Gram-negative proteobacteria, mainly belong to the groups of quorum-quenching lactonases or quorum-quenching acylases. However, identification, characterization, and optimization of these valuable biocatalysts are based on a very limited number of fundamentally different methods with their respective strengths and weaknesses. Here, a (bio)chemical activity assay is described, which perfectly complements the other methods in this field. It enables continuous and high-throughput activity measurements of purified and unpurified quorum-quenching enzymes within several minutes. For this, the reaction products released by quorum-quenching lactonases and quorum-quenching acylases are converted either by a secondary enzyme or by autohydrolysis to l-homoserine. In turn, l-homoserine is detected by the previously described calcein assay, which is sensitive to α-amino acids with free N and C termini. Besides its establishment, the method was applied to the characterization of three previously undescribed quorum-quenching lactonases and variants thereof and to the identification of quorum-quenching acylase-expressing Escherichia coli clones in an artificial library. Furthermore, this study indicates that porcine aminoacylase 1 is not active toward N-acyl-l-homoserine lactones as published previously but instead converts the autohydrolysis product N-acyl-l-homoserine. IMPORTANCE: In this study, a novel method is presented for the identification, characterization, and optimization of quorum-quenching enzymes that are active toward N-acyl-l-homoserine lactones. These are the most common communication molecules among Gram-negative proteobacteria. The activity assay is a highly valuable complement to the available analytical tools in this field. It will facilitate studies on the environmental impact of quorum-quenching enzymes and contribute to the development of therapeutic and technical applications of this promising enzyme class.


Assuntos
4-Butirolactona/análogos & derivados , Amidoidrolases/análise , Hidrolases de Éster Carboxílico/análise , Percepção de Quorum , 4-Butirolactona/metabolismo , Biotransformação , Escherichia coli/genética , Escherichia coli/metabolismo , Ensaios de Triagem em Larga Escala
15.
Anal Biochem ; 495: 52-9, 2016 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-26686030

RESUMO

Nuclear magnetic resonance (NMR)-based screening has been recognized as a powerful approach for the identification and characterization of molecules interacting with pharmaceutical targets. Indeed, several NMR methods have been developed and successfully applied to many drug discovery projects. Whereas most of these approaches have targeted isolated biomolecular receptors, very few cases are reported with the screening performed in intact cells and cell extracts. Here we report the first successful application of the fluorine NMR-based assay n-FABS (n-fluorine atoms for biochemical screening) in living mammalian cells expressing the membrane protein fatty acid amide hydrolase (FAAH). This method allows the identification of both weak and potent inhibitors and the measurement of their potency in a physiological environment.


Assuntos
Amidoidrolases/análise , Ressonância Magnética Nuclear Biomolecular , Amidoidrolases/metabolismo , Benzamidas/química , Benzamidas/metabolismo , Carbamatos/química , Carbamatos/metabolismo , Flúor/química , Células HEK293 , Humanos , Concentração Inibidora 50
16.
J Am Chem Soc ; 137(27): 8684-7, 2015 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-26120870

RESUMO

Firefly luciferase is homologous to fatty acyl-CoA synthetases. We hypothesized that the firefly luciferase substrate d-luciferin and its analogs are fatty acid mimics that are ideally suited to probe the chemistry of enzymes that release fatty acid products. Here, we synthesized luciferin amides and found that these molecules are hydrolyzed to substrates for firefly luciferase by the enzyme fatty acid amide hydrolase (FAAH). In the presence of luciferase, these molecules enable highly sensitive and selective bioluminescent detection of FAAH activity in vitro, in live cells, and in vivo. The potency and tissue distribution of FAAH inhibitors can be imaged in live mice, and luciferin amides serve as exemplary reagents for greatly improved bioluminescence imaging in FAAH-expressing tissues such as the brain.


Assuntos
Amidas/metabolismo , Amidoidrolases/metabolismo , Benzotiazóis/metabolismo , Inibidores Enzimáticos/farmacocinética , Luciferases de Vaga-Lume/metabolismo , Substâncias Luminescentes/metabolismo , Piperidinas/farmacocinética , Piridinas/farmacocinética , Amidas/síntese química , Amidas/química , Amidoidrolases/análise , Amidoidrolases/antagonistas & inibidores , Animais , Benzotiazóis/síntese química , Benzotiazóis/química , Células CHO , Cricetulus , Ensaios Enzimáticos , Inibidores Enzimáticos/farmacologia , Células HeLa , Humanos , Hidrólise , Substâncias Luminescentes/síntese química , Substâncias Luminescentes/química , Camundongos , Imagem Óptica , Piperidinas/farmacologia , Piridinas/farmacologia , Distribuição Tecidual
17.
Environ Monit Assess ; 187(6): 388, 2015 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-26024750

RESUMO

The objective of this study was to determine the effects of two insecticides, namely, acetamiprid and carbofuran on the enzymatic activities of arylamidase (as glucose formed from sinigrin) and myrosinase (as ß-naphthylamine formed from L-leucine ß-naphthylamide) in the black and red clay soils collected from a fallow groundnut (Arachis hypogaea L.) fields in the Anantapur District, Andhra Pradesh, India. The study was realized within the framework of the laboratory experiments in which the acetamiprid and carbofuran were applied to the soils at different doses (1.0, 2.5, 5.0, 7.5, 10.0 kg ha(-1)). Initially, the physicochechemical properties of the soil samples were analyzed. After 10 days of pesticide application, the soil samples were analyzed for the enzyme activities. Acetamiprid and carbofuran stimulated the arylamidase and myrosinase activities at lower concentrations after 10 days incubation. Striking stimulation in soil enzyme activities was noticed at 2.5 kg ha(-1), persists for 20 days in both the soils. Overall, higher concentrations (5.0-10.0 kg ha(-1)) of acetamiprid and carbofuran were toxic or innocuous to the arylamidase and myrosinase activities. Nevertheless, the outcomes of the present study clearly indicate that the use of these insecticides (at field application rates) in the groundnut fields (black and red clay soils) stimulated the enzyme (arylamidase and myrosinase) activities.


Assuntos
Carbofurano/toxicidade , Glicosídeo Hidrolases/análise , Inseticidas/toxicidade , Piridinas/toxicidade , Microbiologia do Solo , Poluentes do Solo/toxicidade , Silicatos de Alumínio , Amidoidrolases/análise , Amidoidrolases/metabolismo , Carbofurano/análise , Argila , Monitoramento Ambiental , Glicosídeo Hidrolases/metabolismo , Índia , Inseticidas/análise , Leucina/análogos & derivados , Leucina/análise , Leucina/metabolismo , Neonicotinoides , Piridinas/análise , Solo/química , Poluentes do Solo/análise , Clima Tropical
18.
J Proteome Res ; 13(3): 1677-87, 2014 Mar 07.
Artigo em Inglês | MEDLINE | ID: mdl-24527689

RESUMO

Cadmium (Cd(2+)) is a toxic heavy metal and a well-known human carcinogen. The toxic effects of Cd(2+) on biological systems are diverse and thought to be exerted through a complex array of mechanisms. Despite the large number of studies aimed to elucidate the toxic mechanisms of action of Cd(2+), few have been targeted toward investigating the ability of Cd(2+) to disrupt multiple cellular pathways simultaneously and the overall cellular responses toward Cd(2+) exposure. In this study, we employed a quantitative proteomic method, relying on stable isotope labeling by amino acids in cell culture (SILAC) and LC-MS/MS, to assess the Cd(2+)-induced simultaneous alterations of multiple cellular pathways in cultured human skin fibroblast cells. By using this approach, we were able to quantify 2931 proteins, and 400 of them displayed significantly changed expression following Cd(2+) exposure. Our results unveiled that Cd(2+) treatment led to the marked upregulation of several antioxidant enzymes (e.g., metallothionein-1G, superoxide dismutase, pyridoxal kinase, etc.), enzymes associated with glutathione biosynthesis and homeostasis (e.g., glutathione S-transferases, glutathione synthetase, glutathione peroxidase, etc.), and proteins involved in cellular energy metabolism (e.g., glycolysis, pentose phosphate pathway, and the citric acid cycle). Additionally, we found that Cd(2+) treatment resulted in the elevated expression of two isoforms of dimethylarginine dimethylaminohydrolase (DDAH I and II), enzymes known to play a key role in regulating nitric oxide biosynthesis. Consistent with these findings, we observed elevated formation of nitric oxide in human skin (GM00637) and lung (IMR-90) fibroblast cells following Cd(2+) exposure. The upregulation of DDAH I and II suggests a role of nitric oxide synthesis in Cd(2+)-induced toxicity in human cells.


Assuntos
Amidoidrolases/análise , Cloreto de Cádmio/toxicidade , Fibroblastos/efeitos dos fármacos , Óxido Nítrico/agonistas , Proteoma/análise , Amidoidrolases/genética , Amidoidrolases/metabolismo , Sequência de Aminoácidos , Linhagem Celular , Fibroblastos/citologia , Fibroblastos/metabolismo , Regulação da Expressão Gênica , Humanos , Marcação por Isótopo , Pulmão/citologia , Pulmão/efeitos dos fármacos , Pulmão/metabolismo , Redes e Vias Metabólicas/efeitos dos fármacos , Anotação de Sequência Molecular , Dados de Sequência Molecular , Óxido Nítrico/biossíntese , Mapeamento de Interação de Proteínas , Proteoma/genética , Proteoma/metabolismo , Pele/citologia , Pele/efeitos dos fármacos , Pele/metabolismo
19.
Kidney Int ; 85(3): 570-8, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24107853

RESUMO

Ischemia/reperfusion injury is the leading cause of acute tubular necrosis. Nitric oxide has a protective role against ischemia/reperfusion injury; however, the role of asymmetric dimethylarginine (ADMA), an endogenous inhibitor of nitric oxide synthase, in ischemia/reperfusion injury remains unclear. ADMA is produced by protein arginine methyltransferase (PRMT) and is mainly degraded by dimethylarginine dimethylaminohydrolase (DDAH). Here we examined the kinetics of ADMA and PRMT and DDAH expression in the kidneys of ischemia/reperfusion-injured mice. After the injury, DDAH-1 levels were decreased and renal and plasma ADMA values were increased in association with renal dysfunction. Renal ADMA was correlated with 8-hydroxy-2'-deoxyguanosine, a marker of oxidative stress. An antioxidant, N-acetylcysteine, or a proteasomal inhibitor, MG-132, restored these alterations. Infusion of subpressor dose of ADMA exacerbated renal dysfunction, capillary loss, and tubular necrosis in the kidneys of ischemia/reperfusion-injured wild mice, while damage was attenuated in DDAH transgenic mice. Thus, ischemia/reperfusion injury-induced oxidative stress may reduce DDAH expression and cause ADMA accumulation, which may contribute to capillary loss and tubular necrosis in the kidney.


Assuntos
Arginina/análogos & derivados , Rim/metabolismo , Traumatismo por Reperfusão/metabolismo , Acetilcisteína/farmacologia , Amidoidrolases/análise , Animais , Arginina/metabolismo , Rim/irrigação sanguínea , Rim/patologia , Masculino , Camundongos Endogâmicos C57BL , Óxido Nítrico Sintase Tipo III/metabolismo , Estresse Oxidativo
20.
Am J Obstet Gynecol ; 211(3): 234.e1-6, 2014 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-24721263

RESUMO

OBJECTIVE: In light of recent findings indicating that endocannabinoid system has antitumor actions, our study aimed to localize it in the human epithelial ovarian tumors, highlighting the differences among benign, borderline, and invasive forms and correlating cannabinoid receptor type 1 (CB1R) expression with disease severity. STUDY DESIGN: We determined CB1R immunohistochemical expression in 66 epithelial ovarian tumors treated in the Department of Woman, Child, and General and Specialized Surgery, Second University of Naples, at S. Maria del Popolo degli Incurabili Hospital (Naples): 36 borderline ovarian tumors, the main target of interest being intermediate forms, 15 benign and 15 invasive ovarian tumors. RESULTS: The benign ovarian tumors showed a weak expression of CB1R in the 33% of the cases and moderate expression in the 67% of the cases. Borderline ovarian tumors had a similar trend. They showed weak CB1R expression in 28% of the cases, moderate expression in 53% of the cases, and strong expression in 19% of the cases. In contrast, invasive tumors showed a weak expression of CB1R in 7% of the cases, moderate expression in 20% of the cases, and strong expression in 73% of the cases. CONCLUSION: The recorded data show that the expression of CB1R increased from benign and borderline to malignant tumors. In the near future, endocannabinoid receptors might be used in clinical practice, alone or in combination with other markers, to identify or better characterize ovarian tumors, without considering the great opportunity that they might represent as therapeutic targets.


Assuntos
Neoplasias Epiteliais e Glandulares/química , Neoplasias Ovarianas/química , Receptor CB1 de Canabinoide/análise , Amidoidrolases/análise , Carcinoma Epitelial do Ovário , Feminino , Humanos , Imuno-Histoquímica , Neoplasias Epiteliais e Glandulares/patologia , Neoplasias Ovarianas/patologia
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