RESUMO
The formaldehyde (FA) degradation ability of the loofa-immobilized Ralstonia eutropha cells in a packed bed reactor was modeled using a statistically based design of the experiment (DOE) considering application of response surface methodology (RSM). The simultaneous effects of four operative test factors on the cells performance in terms of FA degradation rate and extent of the chemical oxygen demand (COD) removal were monitored. The combination of factors at initial FA concentration of 629.7 mg L(-1)h(-1), recycling substrate flow rate of 4.4 mL min(-1), aeration rate of 1.05 vvm, and the system's temperature of 28.8°C resulted the optimal conditions for the FA biodegradation rate and COD removal efficiency. Loofa porous structure was found to be a protective environment for the cells in exposing to the toxic substances and the scanning electron microscopy (SEM) images revealed extensive cells penetration within this support. Oxygen transfer analysis in the form of evaluating K la value was also carried out and at the optimum conditions of the DOE was equaled to 9.96 h(-1)and oxygen uptake rate was 35.6 mg L(-1)h(-1).
Assuntos
Reatores Biológicos , Cupriavidus necator/metabolismo , Formaldeído/metabolismo , Luffa , Poluentes Químicos da Água/metabolismo , Células Imobilizadas/metabolismo , Cupriavidus necator/ultraestrutura , Luffa/ultraestrutura , Microscopia Eletrônica de Varredura , Modelos Teóricos , Oxigênio/metabolismo , SoftwareRESUMO
The bacterium Ralstonia eutropha forms cytoplasmic granules of polyhydroxybutyrate that are a source of biodegradable thermoplastic. While much is known about the biochemistry of polyhydroxybutyrate production, the cell biology of granule formation and growth remains unclear. Previous studies have suggested that granules form either in the inner membrane, on a central scaffold, or in the cytoplasm. Here we used electron cryotomography to monitor granule genesis and development in 3 dimensions (3-D) in a near-native, "frozen-hydrated" state in intact Ralstonia eutropha cells. Neither nascent granules within the cell membrane nor scaffolds were seen. Instead, granules of all sizes resided toward the center of the cytoplasm along the length of the cell and exhibited a discontinuous surface layer more consistent with a partial protein coating than either a lipid mono- or bilayer. Putatively fusing granules were also seen, suggesting that small granules are continually generated and then grow and merge. Together, these observations support a model of biogenesis wherein granules form in the cytoplasm coated not by phospholipid but by protein. Previous thin-section electron microscopy (EM), fluorescence microscopy, and atomic force microscopy (AFM) results to the contrary may reflect both differences in nucleoid condensation and specimen preparation-induced artifacts.
Assuntos
Cupriavidus necator/metabolismo , Cupriavidus necator/ultraestrutura , Grânulos Citoplasmáticos/metabolismo , Grânulos Citoplasmáticos/ultraestrutura , Hidroxibutiratos/metabolismo , Poliésteres/metabolismo , Microscopia Crioeletrônica , Tomografia com Microscopia EletrônicaRESUMO
BACKGROUND: Poly(3-hydroxybutyrate) (PHB) granules are important storage compounds of carbon and energy in many prokaryotes which allow survival of the cells in the absence of suitable carbon sources. Formation and subcellular localization of PHB granules was previously assumed to occur randomly in the cytoplasm of PHB accumulating bacteria. However, contradictionary results on subcellular localization of PHB granules in Ralstonia eutropha were published, recently. RESULTS: Here, we provide evidence by transmission electron microscopy that PHB granules are localized in close contact to the nucleoid region in R. eutropha during growth on nutrient broth. Binding of PHB granules to the nucleoid is mediated by PhaM, a PHB granule associated protein with phasin-like properties that is also able to bind to DNA and to phasin PhaP5. Over-expression of PhaM resulted in formation of many small PHB granules that were always attached to the nucleoid region. In contrast, PHB granules of ∆phaM strains became very large and distribution of granules to daughter cells was impaired. Association of PHB granules to the nucleoid region was prevented by over-expression of PhaP5 and clusters of several PHB granules were mainly localized near the cell poles. CONCLUSION: Subcellular localization of PHB granules is controlled in R. eutropha and depends on the presence and concentrations of at least two PHB granule associated proteins, PhaM and PhaP5.
Assuntos
Proteínas de Bactérias/metabolismo , Cromossomos Bacterianos/metabolismo , Cupriavidus necator/metabolismo , Proteínas de Ligação a DNA/metabolismo , Hidroxibutiratos/metabolismo , Poliésteres/metabolismo , Proteínas de Bactérias/genética , Cupriavidus necator/genética , Cupriavidus necator/ultraestrutura , Proteínas de Ligação a DNA/genética , Deleção de Genes , Microscopia Eletrônica de TransmissãoRESUMO
Polyhydroxybutyrate (PHB) is a biodegradable plastic that can be used as an alternative to petrochemical-based plastics. PHB is produced by various microorganisms such as Ralstonia, Halomonas, and Bacillus species. However, there are very few strains that produce PHB using xylose, an abundant and inexpensive carbon source. In this study, ten xylose-utilizing PHB producers isolated from South Korean marine environments were screened and characterized. Among these isolates, Bacillus sp. SM01, a newly identified strain, produced the highest amount of PHB using xylose. Under optimal conditions, the maximum dry cell weight (DCW) was 3.41 ± 0.09 g/L, with 62% PHB content, and Bacillus sp. SM01 showed Poly (3-hydroxybutyrate-co-3-hydroxyvalerate) copolymer production with propionate; however, the growth of Bacillus sp. SM01 was greatly inhibited by the presence of glucose. Co-culturing Bacillus sp. SM01 with Cupriavidus necator NCIMB 11599 resulted in increased DCW, PHB production, and utilization of glucose and xylose, the main sugar of lignocellulosic biomass, compared with the monoculture. Our results indicated that this co-culture system can be used to increase PHB production and overcome the limitation of sugar consumption associated with Bacillus sp. SM01 and C. necator.
Assuntos
Bacillus/metabolismo , Cupriavidus necator/metabolismo , Hidroxibutiratos/metabolismo , Xilose/metabolismo , Bacillus/genética , Bacillus/isolamento & purificação , Bacillus/ultraestrutura , Varredura Diferencial de Calorimetria , Técnicas de Cocultura , Cupriavidus necator/ultraestrutura , Resistência Microbiana a Medicamentos/genética , Ácidos Pentanoicos/metabolismo , RNA Ribossômico 16S/genética , Fatores de TempoRESUMO
Polyhydroxyalkanoates (PHA) are microbial polyesters which accumulate as intracellular granules in numerous prokaryotes and mainly serve as storage materials; beyond this primary function, PHA also enhance the robustness of bacteria against various stress factors. We have observed that the presence of PHA in bacterial cells substantially enhances their ability to maintain cell integrity when suddenly exposed to osmotic imbalances. In the case of the non-halophilic bacterium Cupriavidus necator, the presence of PHA decreased plasmolysis-induced cytoplasmic membrane damage during osmotic up-shock, which subsequently enabled the cells to withstand subsequent osmotic downshock. In contrast, sudden induction of osmotic up- and subsequent down-shock resulted in massive hypotonic lysis of non-PHA containing cells as determined by Transmission Electron Microscopy and Thermogravimetrical Analysis. Furthermore, a protective effect of PHA against hypotonic lysis was also observed in the case of the halophilic bacterium Halomonas halophila; here, challenged PHA-rich cells were capable of retaining cell integrity more effectively than their PHA-poor counterparts. Hence, it appears that the fact that PHA granules, as an added value to their primary storage function, protect halophiles from the harmful effect of osmotic down-shock might explain why PHA accumulation is such a common feature among halophilic prokaryotes. The results of this study, apart from their fundamental importance, are also of practical biotechnological significance: because PHA-rich bacterial cells are resistant to osmotic imbalances, they could be utilized in in-situ bioremediation technologies or during enrichment of mixed microbial consortia in PHA producers under conditions of fluctuating salinity.
Assuntos
Bactérias/citologia , Bactérias/metabolismo , Cupriavidus necator/citologia , Halomonas/citologia , Osmose , Poli-Hidroxialcanoatos/farmacologia , Bactérias/efeitos dos fármacos , Cupriavidus necator/efeitos dos fármacos , Cupriavidus necator/metabolismo , Cupriavidus necator/ultraestrutura , Halomonas/efeitos dos fármacos , Halomonas/metabolismo , Halomonas/ultraestrutura , Viabilidade Microbiana/efeitos dos fármacos , Temperatura , TermogravimetriaRESUMO
Polyhydroxyalkanoate (PHA) inclusions are polymeric storage inclusions formed in some bacterial species when carbon levels are high but levels of another essential nutrient, such as nitrogen, are low. Though much is known about PHA synthesis, little is known about inclusion structure. In this study, atomic force microscopy (AFM) was employed to elucidate the structure of PHA inclusions at the nanoscale level, including the characterization of different layers of structure. AFM data suggest that underneath the inclusion envelope, there is a 2- to 4-nm-thick network layer that resides on top of a harder layer that is likely to be a crystalline lamellar polymer. The network is comprised of approximately 20-nm-wide linear segments and junctions that are typically formed by the joining of three to four of the linear segments. In some cases, approximately 50-nm globular structures that are raised approximately 1 to 2 nm above the network are present at the junctions. These globular structures always have a central pore that is approximately 15 nm in diameter. To determine if the major surface protein of PHA inclusions, PhaP, is involved in the structure of this network, inclusions from Cupriavidus necator H16 DeltaphaP were examined. No network structure was detected. Instead, apparently random globular structures were found on the surfaces of the inclusions. When PhaP levels were reconstituted in this strain by the addition of phaP on a plasmid, the network was also reconstituted, albeit in a slightly different arrangement from that of the wild-type network. We conclude that PhaP participates in the formation of the inclusion network.
Assuntos
Proteínas de Bactérias/fisiologia , Cupriavidus necator/ultraestrutura , Proteínas de Ligação a DNA/fisiologia , Corpos de Inclusão/ultraestrutura , Poli-Hidroxialcanoatos/metabolismo , Proteínas de Bactérias/genética , Cupriavidus necator/genética , Proteínas de Ligação a DNA/genética , Deleção de Genes , Teste de Complementação Genética , Corpos de Inclusão/genética , Corpos de Inclusão/metabolismo , Microscopia de Força Atômica , Mutagênese InsercionalRESUMO
Numerous prokaryotes accumulate polyhydroxybutyrate (PHB) intracellularly as a storage material. It has also been proposed that PHB accumulation improves bacterial stress resistance. Cupriavidus necator and its PHB non-accumulating mutant were employed to investigate the protective role of PHB under hypertonic conditions. The presence of PHB granules enhanced survival of the bacteria after exposure to hypertonic conditions. Surprisingly, when coping with such conditions, the bacteria did not utilize PHB to harvest carbon or energy, suggesting that, in the osmotic upshock of C. necator, the protective mechanism of PHB granules is not associated with their hydrolysis. The presence of PHB granules influenced the overall properties of the cells, since challenged PHB-free cells underwent massive plasmolysis accompanied by damage to the cell membrane and the leakage of cytoplasm content, while no such effects were observed in PHB containing bacteria. Moreover, PHB granules demonstrated "liquid-like" properties indicating that they can partially repair and stabilize cell membranes by plugging small gaps formed during plasmolysis. In addition, the level of dehydration and changes in intracellular pH in osmotically challenged cells were less pronounced for PHB-containing cultures, demonstrating the important role of PHB for bacterial survival under hyperosmotic conditions.
Assuntos
Cupriavidus necator/citologia , Cupriavidus necator/metabolismo , Grânulos Citoplasmáticos/metabolismo , Hidroxibutiratos/metabolismo , Soluções Hipertônicas/farmacologia , Microscopia Crioeletrônica , Cristalização , Cupriavidus necator/efeitos dos fármacos , Cupriavidus necator/ultraestrutura , Grânulos Citoplasmáticos/efeitos dos fármacos , Grânulos Citoplasmáticos/ultraestrutura , Fluoresceínas/metabolismo , Viabilidade Microbiana/efeitos dos fármacos , Microscopia de Fluorescência , Pressão Osmótica/efeitos dos fármacos , Termogravimetria , Fatores de Tempo , ÁguaRESUMO
Many bacteria are capable of accumulating intracellular granules of polyhydroxyalkanoates (PHA). In this work, we developed confocal microscopy analysis of bacterial cells to study changes in the diameters of cells as well as PHA granules during growth and PHA accumulation in the bacterium Cupriavidus necator H16 (formerly Ralstonia eutropha). The cell envelope was stained by DiD(®) fluorescent probe and PHA granules by Nile Red. Signals from both probes were separated based on their spectral and fluorescence life-time properties. During growth and PHA accumulation, bacterial cells increased their length but the width of the cells remained constant. The volume fraction of PHA granules in cells increased during PHA accumulation, nevertheless, its value did not exceed 40 vol. % regardless of the PHA weight content. It seems that bacterial cultures lengthen the cells in order to control the PHA volume portion. However, since similar changes in cell length were also observed in a PHA non-accumulating mutant, it seems that there is no direct control mechanism, which regulates the prolongation of the cells with respect to PHA granules volume. It is more likely that PHA biosynthesis and the length of cells are influenced by the same external stimuli such as nutrient limitation.
Assuntos
Cupriavidus necator/metabolismo , Cupriavidus necator/ultraestrutura , Grânulos Citoplasmáticos/ultraestrutura , Poli-Hidroxialcanoatos/metabolismo , Cupriavidus necator/crescimento & desenvolvimento , Grânulos Citoplasmáticos/metabolismo , Microscopia Confocal , Microscopia de Fluorescência , Poli-Hidroxialcanoatos/químicaRESUMO
Atomic force microscopy analysis of polyhydroxyalkanoate (PHA) inclusions isolated from sonicated Ralstonia eutropha cells revealed that they exhibit two types of surface structure and shape; rough and ovoid, or smooth and spherical. Smooth inclusions possessed linear surface structures that were in parallel arrays with 7-nm spacing. Occasionally, cracks or fissures could be seen on the surface of the rough inclusions, which allowed a measurement of approximately 4 nm for the thickness of the boundary layer. When the rough inclusions were imaged at higher resolution, globular structures, 35 nm in diameter, having a central pore could be seen. These globular structures were connected by a network of 4-nm-wide linear structures. When the inclusions were treated with sodium lauryl sulfate, the boundary layer of the inclusion deteriorated in a manner that would be consistent with a lipid envelope. When the boundary layer was largely gone, 35-nm globular disks could be imaged laying on the surface of the filter beside the inclusions. These data have facilitated the development of a preliminary model for PHA inclusion structure that is more advanced than previous models.
Assuntos
Cupriavidus necator/metabolismo , Cupriavidus necator/ultraestrutura , Corpos de Inclusão/ultraestrutura , Microscopia de Força Atômica/métodos , Poliésteres/metabolismo , Dodecilsulfato de Sódio , SonicaçãoRESUMO
Polyhydroxyalkanoate (PHA) cellular inclusions consist of polyesters, phospholipids, and proteins. Both the polymerase and the depolymerase enzymes are active components of the structure. Recently, proteins associated with these inclusions have been described in a number of bacterial species. In order to further clarify the structure and function of these proteins in relation to polymer inclusions, ultrastructural studies of isolated polymer inclusions were initiated. The surface boundary characteristics of polymer inclusions, produced by several genera of bacteria, two different Pseudomonas putida deletion mutants and by Escherichia coli recombinants, were examined. The recombinant E. coli carried either the PHB biosynthesis operon (phaCAB) from Ralstonia eutropha alone, or both this operon and a gene encoding an inclusion surface protein of R. eutropha (phaP). The results support two suggestions: (i) specific genes in the PHA gene cluster code for the proteins forming the surface boundary arrays which characterize the polymer inclusion; and (ii) transfer of such a gene would result in subcellular compartmentalization of accumulating polymer. Although the proteins appear to serve a similar function among different genera, nevertheless, the different surface proteins are encoded by a variety of non-homologous genetic sequences.
Assuntos
Ácidos Acíclicos/metabolismo , Proteínas de Bactérias/metabolismo , Grânulos Citoplasmáticos/metabolismo , Cupriavidus necator/genética , Cupriavidus necator/metabolismo , Cupriavidus necator/ultraestrutura , Escherichia coli/genética , Escherichia coli/metabolismo , Escherichia coli/ultraestrutura , Técnica de Fratura por Congelamento , Genes Bacterianos , Microscopia Eletrônica , Pseudomonas/genética , Pseudomonas/metabolismo , Pseudomonas/ultraestruturaRESUMO
Atomic force microscopy in the tapping mode was used to investigate aqueous acetone-treated polyhydroxyalkanoate (PHA) inclusions freshly isolated from a recombinant bacterium. The PHA is a copolymer containing about 95 mol% 3-hydroxybutyrate units while the rests are units of 3-hydroxyhexanoate, 3-hydroxyoctanoate, 3-hydroxydecanoate, and 3-hydroxydodecanoate. Polymer chains extending to several micrometers in length were observed on glass cover slips upon the evaporation of the aqueous acetone. The polymer chains seem to exist in the form of fibrillar aggregates. The height of the microfibrils was about 1 nm. Upon prolonged standing at ambient conditions, the microfibrils dissociated into finer strands of about 0.5 nm in height. The results suggest that biosynthesized PHA are stored in the inclusions in an amorphous state but with minimal chain entanglement. This is possible because the PHA chains exist in the form of fibrillar aggregates that may be the product of a special biosynthesis mechanism.
Assuntos
Cupriavidus necator/metabolismo , Corpos de Inclusão/ultraestrutura , Microscopia de Força Atômica/métodos , Polímeros/química , Cupriavidus necator/genética , Cupriavidus necator/crescimento & desenvolvimento , Cupriavidus necator/ultraestrutura , Polímeros/metabolismo , Recombinação GenéticaRESUMO
Polyhydroxyalkanoate (PHA) granules with core-shell layered microstructure were synthesized in Ralstonia eutropha using periodic feeding of valeric acid into a growth medium containing excess fructose. The O2 consumption and CO2 evolution rates, determined by off-gas mass spectrometry, have been used as sensitive measures to indicate the type of nutrients utilized by R. eutropha during PHA synthesis. Domains of poly-3-hydroxybutyrate (PHB) were formed during polymer storage conditions when only fructose was present. Feeding of valeric acid (pentanoic acid) resulted in the synthesis of hydroxyvalerate (HV) monomers, forming a poly-3-hydroxybutyrate-co-valerate (PHBV) copolymer. The synthesis of desired polymer microstructures was monitored and controlled using online mass spectrometry (MS). The respiratory quotient (RQ) was unique to the type of polymer being synthesized due to increased O2 consumption during PHBV synthesis. MS data was used as the control signal for nutrient feeding strategies in the bioreactor. The core-shell structures synthesized were verified in cells using transmission electron microscopy after thin sectioning and staining with RuO4. It was demonstrated that the synthesis of core-shell microstructures can be precisely controlled utilizing a MS feedback control system.
Assuntos
Biotecnologia/métodos , Cupriavidus necator/metabolismo , Grânulos Citoplasmáticos/ultraestrutura , Hidroxibutiratos/metabolismo , Poliésteres/metabolismo , Ácido 3-Hidroxibutírico/metabolismo , Cupriavidus necator/ultraestrutura , Grânulos Citoplasmáticos/química , Grânulos Citoplasmáticos/metabolismo , Fermentação , Frutose/metabolismo , Hidroxibutiratos/análise , Espectrometria de Massas , Microscopia Eletrônica de Transmissão , Consumo de Oxigênio , Ácidos Pentanoicos/metabolismo , Poliésteres/análiseRESUMO
Microbial polyhydroxyalkanoates (PHAs), because of their well studied complex physiology and commercial potential, are vehicles for carbon and potential storage reduction for many microbial species. Even with the wealth of studies about microbial PHAs in the scientific literature, polymer accumulation and degradation are still not comprehensively understood. Poly(3-hydroxybutyrate) (P3HB) granule formation and polymer mobility were studied here in the bacterium Ralstonia eutropha strain B5786 in autotrophic cultures. Electron microscopy studies revealed decreasing cell size concomitant with enlargement of size and number of intracellular granules, and inhibition of cell division during intracellular polymer production. Activities of key P3HB biosynthetic enzymes demonstrated correlations with each other during polymer accumulation, suggesting an intricately regulated P3HB cycle in autotrophically grown R. eutropha cells.
Assuntos
Cupriavidus necator/crescimento & desenvolvimento , Cupriavidus necator/metabolismo , Hidroxibutiratos/metabolismo , Poliésteres/metabolismo , Cupriavidus necator/ultraestrutura , Grânulos Citoplasmáticos/metabolismo , Grânulos Citoplasmáticos/ultraestrutura , Microscopia Eletrônica de TransmissãoRESUMO
Transmission imaging with an environmental scanning electron microscope (ESEM) (Wet STEM) is a recent development in the field of electron microscopy, combining the simple preparation inherent to ESEM work with an alternate form of contrast available through a STEM detector. Because the technique is relatively new, there is little information available on how best to apply this technique and which samples it is best suited for. This work is a description of the sample preparation and microscopy employed by the authors for imaging bacteria with Wet STEM (scanning transmission electron microscopy). Three different bacterial samples will be presented in this study: first, used as a model system, is Escherichia coli for which the contrast mechanisms of STEM are demonstrated along with the visual effects of a dehydration-induced collapse. This collapse, although clearly in some sense artifactual, is thought to lead to structurally meaningful morphological information. Second, Wet STEM is applied to two distinct bacterial systems to demonstrate the novel types of information accessible by this approach: the plastic-producing Cupriavidus necator along with wild-type and ΔmreC knockout mutants of Salmonella enterica serovar Typhimurium. Cupriavidus necator is shown to exhibit clear internal differences between bacteria with and without plastic granules, while the ΔmreC mutant of S. Typhimurium has an internal morphology distinct from that of the wild type.
Assuntos
Cupriavidus necator/ultraestrutura , Escherichia coli/ultraestrutura , Microscopia Eletrônica/métodos , Salmonella typhimurium/ultraestrutura , DesidrataçãoRESUMO
The development of nanoparticles has greatly improved the catalytic properties of metals due to the higher surface to volume ratio of smaller particles. The production of nanoparticles is most commonly based on abiotic processes, but in the search for alternative protocols, bacterial cells have been identified as excellent scaffolds of nanoparticle nucleation, and bacteria have been successfully employed to recover and regenerate platinum group metals from industrial waste. We report on the formation of bio-supported palladium (Pd) nanoparticles on the surface of two bacterial species with distinctly different surfaces: the gram positive Staphylococcus sciuri and the gram negative Cupriavidus necator. We investigated how the type of bacterium and the amount of biomass affected the size and catalytic properties of the nanoparticles formed. By increasing the biomass:Pd ratio, we could produce bio-supported Pd nanoparticles smaller than 10nm in diameter, whereas lower biomass:Pd ratios resulted in particles ranging from few to hundreds of nm. The bio-supported Pd nanoparticle catalytic properties were investigated towards the Suzuki-Miyaura cross coupling reaction and hydrogenation reactions. Surprisingly, the smallest nanoparticles obtained at the highest biomass:Pd ratio showed no reactivity towards the test reactions. The lack of reactivity appears to be caused by thiol groups, which poison the catalyst by binding strongly to Pd. Different treatments intended to liberate particles from the biomass, such as burning or rinsing in acetone, did not re-establish their catalytic activity. Sulphur-free biomaterials should therefore be explored as more suitable scaffolds for Pd(0) nanoparticle formation.
Assuntos
Cupriavidus necator/química , Nanopartículas Metálicas/química , Paládio/química , Staphylococcus/química , Biomassa , Catálise , Cupriavidus necator/crescimento & desenvolvimento , Cupriavidus necator/ultraestrutura , Nanopartículas Metálicas/ultraestrutura , Microscopia Eletrônica de Transmissão , Tamanho da Partícula , Staphylococcus/crescimento & desenvolvimento , Staphylococcus/ultraestrutura , Propriedades de SuperfícieRESUMO
Poly(3-hydroxybutyrate) (PHB), a representative polyhydroxyalkanoate (PHA), is a naturally occurring biopolyester stored as tiny, intracellular granules in microbial cells. In vivo, native PHB granules are amorphous, stabilized by a monolayer membrane and intra-granule water. When subjected to varying environmental conditions, the native granules may become partially crystalline. The in situ crystallinity of native PHB granules in Ralstonia eutropha cells suspended in aqueous solution was monitored with attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR). No sample preparation was required for measurement. A major measurement error could be caused by the evaporation of water. Therefore, the infrared absorption spectra should be taken after the initial settlement of cells, but before excessive dehydration. Background interference caused by water and non-PHB biomass was constant throughout the time course of measurement, regardless of granule crystallinity. The wavenumber 1184 cm(-1) was found to be most sensitive to the in situ crystallinity of native PHB granules.
Assuntos
Biopolímeros/química , Cupriavidus necator/química , Grânulos Citoplasmáticos/química , Hidroxibutiratos/química , Poliésteres/química , Algoritmos , Biopolímeros/metabolismo , Calibragem , Varredura Diferencial de Calorimetria , Cristalização , Cupriavidus necator/metabolismo , Cupriavidus necator/ultraestrutura , Grânulos Citoplasmáticos/metabolismo , Grânulos Citoplasmáticos/ultraestrutura , Concentração de Íons de Hidrogênio , Hidroxibutiratos/metabolismo , Microscopia Eletrônica de Transmissão , Modelos Químicos , Poliésteres/metabolismo , Espectroscopia de Infravermelho com Transformada de FourierRESUMO
Phasins play an important role in the formation of poly(3-hydroxybutyrate) [PHB] granules and affect their size and number in the cells. Recent studies on the PHB granule proteome and analysis of the complete genomic DNA sequence of Ralstonia eutropha H16 have identified three homologues of the phasin protein PhaP1. In this study, mutants of R. eutropha deficient in the expression of the phasin genes phaP1, phaP2, phaP3, phaP4, phaP12, phaP123, and phaP1234 were examined by gas chromatography. In addition, the nanostructures of the PHB granules of the wild-type and of the mutants were imaged by atomic force microscopy (AFM), and the molecular masses of the accumulated PHB were analyzed by gel permeation chromatography. For this, cells were cultivated under conditions permissive for accumulation of PHB and were then cultivated under conditions permissive for degradation of PHB. Mutants deficient in the expression of phaP2, phaP3, or phaP4 genes mobilized the stored PHB only slowly like the wild-type, whereas degradation occurred much earlier and faster in the phaP1 single mutant as well as in all multiple mutants defective in the phaP1 gene plus one or more other phasin genes. This indicated that the presence of the major phasin PhaP1 on the granule surface is important for PHB degradation and that this phasin is therefore of particular relevance for PHB accumulation. It was also shown that the molecular weights of the accumulated PHB were identical in all examined strains; phasins have therefore no influence on the molecular weight of PHB. The AFM images obtained in this study showed that the PHB granules of R. eutropha H16 form a single interconnected system inside the wild-type cells.
Assuntos
Cupriavidus necator/metabolismo , Hidroxibutiratos/química , Hidroxibutiratos/metabolismo , Lectinas de Plantas/genética , Lectinas de Plantas/fisiologia , Poliésteres/química , Poliésteres/metabolismo , Cupriavidus necator/citologia , Cupriavidus necator/ultraestrutura , Genoma Bacteriano , Cinética , Microscopia de Força Atômica , Nanoestruturas , Análise de Sequência de DNARESUMO
In this study the technique of energy-filtering transmission electron microscopy was applied to localize cyanophycin (CGP) in recombinant strains of Ralstonia eutropha. Since CGP is a polymer consisting of the amino acids aspartate and arginine, which functions as a temporary nitrogen reserve that is deposited as insoluble inclusions in the cytoplasm of the cell, its nitrogen content is significantly higher than that of the other cell matter. In this study, we recorded nitrogen distribution maps, which represent the location of CGP in ultrathin sections of resin-embedded cells of recombinant strains of R. eutropha expressing the cyanophycin synthetase of Anabaena sp. strain PCC 7120. Furthermore, the existence of nitrogen in CGP granules was additionally proven by recording electron energy-loss spectra. The samples of R. eutropha H16 (pBBR1MCS-2::cphA1(7120)) revealed a second type of granule, which does not show nitrogen in the corresponding maps and which can be identified as an inclusion containing poly(3-hydroxybutyric acid). The methods applied in this study are suitable to identify storage compounds with elevated nitrogen contents and to reveal their location in the bacterial cell. The methods are also very helpful to distinguish between inclusions of different chemical compositions that occur both at the same time in the cells but cannot or only hardly be distinguished by other methods.
Assuntos
Cupriavidus necator/metabolismo , Cupriavidus necator/ultraestrutura , Microscopia Eletrônica de Transmissão por Filtração de Energia , Nitrogênio/análise , Proteínas de Plantas/análise , Proteínas de Plantas/ultraestrutura , Proteínas de Bactérias , Cupriavidus necator/química , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , PlasmídeosRESUMO
An increasing number of studies utilize confocal laser scanning microscopy (CLSM) for in situ visualization of biofilms and rely on the use of image analysis programs to extract quantitative descriptors of architecture. Recently, designed programs have begun incorporating procedures to automatically determine threshold values for three-dimensional CLSM image stacks. We have found that the automated threshold calculation is biased when a stack contains images lacking pixels of biological significance. Consequently, we have created the novel program Auto PHLIP-ML to resolve this bias by iteratively excluding extraneous images based on their area coverage of biomass. A procedure was developed to identify the optimal percent area coverage value used for extraneous image removal (PACVEIR). The optimal PACVEIR was defined to occur when the standard deviation of mean thickness, determined from replicate image stacks, was at a maximum, because it more accurately reflected inherent structural variation. Ten monoculture biofilms of either Ralstonia eutropha JMP228n::gfp or Acinetobacter sp. strain BD413 were tested to verify the routine. All biofilms exhibited an optimal PACVEIR between 0 and 1%. Prior to the exclusion of extraneous images, JMP228n::gfp appeared to develop more homogeneous biofilms than BD413. However, after the removal of extraneous images, JMP228n::gfp biofilms were found to form more heterogeneous biofilms. Similarly, JMP228n::gfp biofilms grown on glass surfaces vis-à-vis polyethylene membranes produced significantly different architectures after extraneous images had been removed but not when such images were included in threshold calculations. This study shows that the failure to remove extraneous images skewed a seemingly objective analysis of biofilm architecture and significantly altered statistically derived conclusions.
Assuntos
Acinetobacter/crescimento & desenvolvimento , Biofilmes/crescimento & desenvolvimento , Cupriavidus necator/crescimento & desenvolvimento , Processamento de Imagem Assistida por Computador , Microscopia Confocal , Acinetobacter/ultraestrutura , Automação/instrumentação , Automação/métodos , Viés , Cupriavidus necator/genética , Cupriavidus necator/ultraestrutura , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Microscopia Confocal/instrumentação , Microscopia Confocal/métodosRESUMO
Wautersia eutropha, formerly known as Ralstonia eutropha, a gram-negative bacterium, accumulates polyhydroxybutyrate (PHB) as insoluble granules inside the cell when nutrients other than carbon are limited. In this paper, we report findings from kinetic studies of granule formation and degradation in W. eutropha H16 obtained using transmission electron microscopy (TEM). In nitrogen-limited growth medium, the phenotype of the cells at the early stages of granule formation was revealed for the first time. At the center of the cells, dark-stained "mediation elements" with small granules attached were observed. These mediation elements are proposed to serve as nucleation sites for granule initiation. TEM images also revealed that when W. eutropha cells were introduced into nitrogen-limited medium from nutrient-rich medium, the cell size increased two- to threefold, and the cells underwent additional volume changes during growth. Unbiased stereology was used to analyze the two-dimensional TEM images, from which the average volume of a W. eutropha H16 cell and the total surface area of granules per cell in nutrient-rich and PHB production media were obtained. These parameters were essential in the calculation of the concentration of proteins involved in PHB formation and utilization and their changes with time. The extent of protein coverage of the granule surface area is presented in the accompanying paper.