amPEPpy 1.0: a portable and accurate antimicrobial peptide prediction tool.
Bioinformatics
; 37(14): 2058-2060, 2021 08 04.
Article
em En
| MEDLINE
| ID: mdl-33135060
ABSTRACT
SUMMARY:
Antimicrobial peptides (AMPs) are promising alternative antimicrobial agents. Currently, however, portable, user-friendly and efficient methods for predicting AMP sequences from genome-scale data are not readily available. Here we present amPEPpy, an open-source, multi-threaded command-line application for predicting AMP sequences using a random forest classifier. AVAILABILITY AND IMPLEMENTATION amPEPpy is implemented in Python 3 and is freely available through GitHub (https//github.com/tlawrence3/amPEPpy). SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
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Base de dados:
MEDLINE
Assunto principal:
Software
/
Genoma
Idioma:
En
Ano de publicação:
2021
Tipo de documento:
Article
País de afiliação:
Estados Unidos