Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.
Database (Oxford)
; 20222022 10 08.
Article
em En
| MEDLINE
| ID: mdl-36208225
Similar to managing software packages, managing the ontology life cycle involves multiple complex workflows such as preparing releases, continuous quality control checking and dependency management. To manage these processes, a diverse set of tools is required, from command-line utilities to powerful ontology-engineering environmentsr. Particularly in the biomedical domain, which has developed a set of highly diverse yet inter-dependent ontologies, standardizing release practices and metadata and establishing shared quality standards are crucial to enable interoperability. The Ontology Development Kit (ODK) provides a set of standardized, customizable and automatically executable workflows, and packages all required tooling in a single Docker image. In this paper, we provide an overview of how the ODK works, show how it is used in practice and describe how we envision it driving standardization efforts in our community. Database URL: https://github.com/INCATools/ontology-development-kit.
Texto completo:
1
Base de dados:
MEDLINE
Assunto principal:
Ontologias Biológicas
Idioma:
En
Ano de publicação:
2022
Tipo de documento:
Article
País de afiliação:
Grécia