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A Data Deposition Platform for Sharing Nuclear Magnetic Resonance Data.
Pin, Matthew; Poynton, Ella F; Jordan, Tamara; Kim, Jonghyeok; Ledingham, Benjamin; van Santen, Jeffrey A; Yang, Vera; Maras, Andrew; Tavangar, Pegah; Gautam, Vasuk; Peters, Harrison; Sajed, Tanvir; Lee, Brian L; Shreffler, Hailey A; Koller, James T; Tretter, Zachary M; Cort, John R; Sumner, Lloyd W; Wishart, David S; Linington, Roger G.
Afiliação
  • Pin M; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
  • Poynton EF; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
  • Jordan T; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
  • Kim J; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
  • Ledingham B; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
  • van Santen JA; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
  • Yang V; Unnatural Products, 2161 Delaware Avenue Suite A, Santa Cruz, California 95060, United States.
  • Maras A; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
  • Tavangar P; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
  • Gautam V; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
  • Peters H; Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
  • Sajed T; Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
  • Lee BL; Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
  • Shreffler HA; Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
  • Koller JT; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States.
  • Tretter ZM; Interdisciplinary Plant Group, MU Metabolomics Center, Bond Life Sciences Center, Department of Biochemistry, University of Missouri, Columbia, Missouri 65211, United States.
  • Cort JR; Interdisciplinary Plant Group, MU Metabolomics Center, Bond Life Sciences Center, Department of Biochemistry, University of Missouri, Columbia, Missouri 65211, United States.
  • Sumner LW; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States.
  • Wishart DS; Interdisciplinary Plant Group, MU Metabolomics Center, Bond Life Sciences Center, Department of Biochemistry, University of Missouri, Columbia, Missouri 65211, United States.
  • Linington RG; Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
J Nat Prod ; 86(11): 2554-2561, 2023 11 24.
Article em En | MEDLINE | ID: mdl-37935005
ABSTRACT
Nuclear magnetic resonance (NMR) data are rarely deposited in open databases, leading to loss of critical scientific knowledge. Existing data reporting methods (images, tables, lists of values) contain less information than raw data and are poorly standardized. Together, these issues limit FAIR (findable, accessible, interoperable, reusable) access to these data, which in turn creates barriers for compound dereplication and the development of new data-driven discovery tools. Existing NMR databases either are not designed for natural products data or employ complex deposition interfaces that disincentivize deposition. Journals, including the Journal of Natural Products (JNP), are now requiring data submission as part of the publication process, creating the need for a streamlined, user-friendly mechanism to deposit and distribute NMR data.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Produtos Biológicos Idioma: En Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Canadá
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Produtos Biológicos Idioma: En Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Canadá