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Design, development, and implementation of IsoBank: A centralized repository for isotopic data.
Shipley, Oliver N; Dabrowski, Anna J; Bowen, Gabriel J; Hayden, Brian; Pauli, Jonathan N; Jordan, Christopher; Anderson, Lesleigh; Bailey, Adriana; Bataille, Clement P; Cicero, Carla; Close, Hilary G; Cook, Craig; Cook, Joseph A; Desai, Ankur R; Evaristo, Jaivime; Filley, Tim R; France, Christine A M; Jackson, Andrew L; Kim, Sora Lee; Kopf, Sebastian; Loisel, Julie; Manlick, Philip J; McFarlin, Jamie M; McMeans, Bailey C; O'Connell, Tamsin C; Pilaar Birch, Suzanne E; Putman, Annie L; Semmens, Brice X; Stantis, Chris; Stricker, Craig A; Szejner, Paul; Trammell, Tara L E; Uhen, Mark D; Weintraub-Leff, Samantha; Wooller, Matthew J; Williams, John W; Yarnes, Christopher T; Vander Zanden, Hannah B; Newsome, Seth D.
Afiliação
  • Shipley ON; Department of Biology, University of New Mexico, Albuquerque, New Mexico, United States of America.
  • Dabrowski AJ; School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, New York, United States of America.
  • Bowen GJ; Texas Advanced Computing Center, University of Texas at Austin, Austin, Texas, United States of America.
  • Hayden B; Department of Geology and Geophysics, University of Utah, Salt Lake City, Utah, United States of America.
  • Pauli JN; Department of Biology, Canadian Rivers Institute, University of New Brunswick, New Brunswick, Canada.
  • Jordan C; Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
  • Anderson L; Texas Advanced Computing Center, University of Texas at Austin, Austin, Texas, United States of America.
  • Bailey A; United States Geological Survey Geoscience and Environmental Change Science Center, Denver, Colorado, United States of America.
  • Bataille CP; Climate and Space Sciences and Engineering, University of Michigan, Ann Arbor, Michigan, United States of America.
  • Cicero C; Department of Earth and Environmental Sciences, University of Ottawa, Ontario, Canada.
  • Close HG; Museum of Vertebrate Zoology, University of California, Berkeley, Canada, United States of America.
  • Cook C; Rosenstiel School of Marine, Atmospheric, and Earth Science, University of Miami, Miami, Florida, United States of America.
  • Cook JA; University of Wyoming Stable Isotope Facility, University of Wyoming, Laramie, Wyoming, United States of America.
  • Desai AR; Department of Biology, University of New Mexico, Albuquerque, New Mexico, United States of America.
  • Evaristo J; Department of Atmospheric and Oceanic Sciences, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
  • Filley TR; Copernicus Institute of Sustainable Development, Utrecht University, Utrecht, The Netherlands.
  • France CAM; Department of Geography and Environmental Sustainability, University of Oklahoma, Oklahoma, United States of America.
  • Jackson AL; Museum Conservation Institute, Smithsonian Institution, Suitland, Maryland, United States of America.
  • Kim SL; School of Natural Sciences, Trinity College Dublin, Dublin, Ireland.
  • Kopf S; Department of Life and Environmental Sciences, University of California, Merced, Merced, California, United States of America.
  • Loisel J; Department of Geological Sciences, University of Colorado, Boulder, Colorado, United States of America.
  • Manlick PJ; Department of Geography, Texas A&M University, College Station, Texas, United States of America.
  • McFarlin JM; Department of Biology, University of New Mexico, Albuquerque, New Mexico, United States of America.
  • McMeans BC; United States Department of Agriculture, Pacific Northwest Research Station, Juneau, Alaska, United States of America.
  • O'Connell TC; Department of Geology and Geophysics, University of Wyoming, Laramie, Wyoming, United States of America.
  • Pilaar Birch SE; Department of Biology, University of Toronto Mississauga, Mississauga, Ontario, Canada.
  • Putman AL; Department of Archaeology, University of Cambridge, Downing Street, United Kingdom.
  • Semmens BX; Department of Anthropology and Department of Geography, University of Georgia, Athens, Georgia, United States of America.
  • Stantis C; United States Geological Survey, Utah Water Science Center, West Valley City, Utah, United States of America.
  • Stricker CA; Scripps Institution of Oceanography, University of California San Diego, San Diego, California, United States of America.
  • Szejner P; Department of Geology and Geophysics, University of Utah, Salt Lake City, Utah, United States of America.
  • Trammell TLE; United States Geological Survey, Fort Collins Science Center, Denver, Colorado, United States of America.
  • Uhen MD; Bioeconomy and Environment Unit, Natural Resources Institute Finland, Helsinki, Finland.
  • Weintraub-Leff S; Department of Plant and Soil Sciences, University of Delaware, Newark, Delaware, United States of America.
  • Wooller MJ; Department of Atmospheric, Oceanic, and Earth Sciences, George Mason University, Fairfax, Vermont, United States of America.
  • Williams JW; National Ecological Observatory Network, Battelle, Boulder, Colorado, United States of America.
  • Yarnes CT; Alaska Stable Isotope Facility, Water and Environmental Research Center, Institute of Northern Engineering, University of Alaska Fairbanks, Fairbanks, Alaska, United States of America.
  • Vander Zanden HB; College of Fisheries and Ocean Sciences, University of Alaska Fairbanks, Fairbanks, Alaska, United States of America.
  • Newsome SD; Department of Geography, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
PLoS One ; 19(9): e0295662, 2024.
Article em En | MEDLINE | ID: mdl-39240878
ABSTRACT
Stable isotope data have made pivotal contributions to nearly every discipline of the physical and natural sciences. As the generation and application of stable isotope data continues to grow exponentially, so does the need for a unifying data repository to improve accessibility and promote collaborative engagement. This paper provides an overview of the design, development, and implementation of IsoBank (www.isobank.org), a community-driven initiative to create an open-access repository for stable isotope data implemented online in 2021. A central goal of IsoBank is to provide a web-accessible database supporting interdisciplinary stable isotope research and educational opportunities. To achieve this goal, we convened a multi-disciplinary group of over 40 analytical experts, stable isotope researchers, database managers, and web developers to collaboratively design the database. This paper outlines the main features of IsoBank and provides a focused description of the core metadata structure. We present plans for future database and tool development and engagement across the scientific community. These efforts will help facilitate interdisciplinary collaboration among the many users of stable isotopic data while also offering useful data resources and standardization of metadata reporting across eco-geoinformatics landscapes.
Assuntos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Bases de Dados Factuais / Metadados Idioma: En Ano de publicação: 2024 Tipo de documento: Article País de afiliação: Estados Unidos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Bases de Dados Factuais / Metadados Idioma: En Ano de publicação: 2024 Tipo de documento: Article País de afiliação: Estados Unidos