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1.
Anaerobe ; 39: 105-13, 2016 Jun.
Article in English | MEDLINE | ID: mdl-27012900

ABSTRACT

Clostridium perfringens isolates associated with food poisoning carries a chromosomal cpe gene, while non-foodborne human gastrointestinal disease isolates carry a plasmid cpe gene. The enterotoxigenic strains tested produced vegetative cells and spores with significantly higher resistance than non-enterotoxigenic strains. These results suggest that the vegetative cells and spores have a competitive advantage over non-enterotoxigenic strains. However, no explanation has been provided for the significant associations between chromosomal cpe genotypes with the high resistance, which could explain the strong relationship between chromosomal cpe isolates and C. perfringens type A food poisoning. Here, we analyse the action of physical and chemical agent on non-enterotoxigenic and enterotoxigenic regional strains. And this study tested the relationship between the sensitivities of spores and their levels SASPs (small acid soluble proteins) production in the same strains examined.


Subject(s)
Chromosomes, Bacterial/chemistry , Clostridium perfringens/genetics , Enterotoxins/genetics , Genes, Bacterial , Meat/analysis , Plasmids/metabolism , Spores, Bacterial/genetics , Animals , Cattle , Clostridium perfringens/metabolism , Clostridium perfringens/pathogenicity , Enterotoxins/biosynthesis , Gene Expression , Hot Temperature , Humans , Osmotic Pressure , Plasmids/chemistry , Spices/analysis , Spices/microbiology , Spores, Bacterial/metabolism , Spores, Bacterial/pathogenicity
2.
PLoS One ; 15(11): e0240474, 2020.
Article in English | MEDLINE | ID: mdl-33151956

ABSTRACT

The southern boundary of prehispanic farming in South America occurs in central Mendoza Province, Argentina at approximately 34 degrees south latitude. Archaeological evidence of farming includes the recovery of macrobotanical remains of cultigens and isotopic chemistry of human bone. Since the 1990s, archaeologists have also hypothesized that the llama (Lama glama), a domesticated South American camelid, was also herded near the southern boundary of prehispanic farming. The remains of a wild congeneric camelid, the guanaco (Lama guanicoe), however, are common in archaeological sites throughout Mendoza Province. It is difficult to distinguish bones of the domestic llama from wild guanaco in terms of osteological morphology, and therefore, claims that llama were in geographic areas where guanaco were also present based on osteometric analysis alone remain equivocal. A recent study, for example, claimed that twenty-five percent of the camelid remains from the high elevation Andes site of Laguna del Diamante S4 were identified based on osteometric evidence as domestic llama, but guanaco are also a likely candidate since the two species overlap in size. We test the hypothesis that domesticated camelids occurred in prehispanic, southern Mendoza through analysis of ancient DNA. We generated whole mitochondrial genome datasets from 41 samples from southern Mendoza late Holocene archaeological sites, located between 450 and 3400 meters above sea level (masl). All camelid samples from those sites were identified as guanaco; thus, we have no evidence to support the hypothesis that the domestic llama occurred in prehispanic southern Mendoza.


Subject(s)
Agriculture/history , Animals, Domestic/genetics , Animals, Wild/genetics , Camelids, New World/genetics , DNA, Ancient/analysis , Animals , Archaeology/methods , Argentina , Domestication , Genome, Mitochondrial , History, 15th Century , History, 16th Century , Whole Genome Sequencing
3.
PLoS One ; 9(5): e98353, 2014.
Article in English | MEDLINE | ID: mdl-24851862

ABSTRACT

The tribe Hyoscyameae (Solanaceae) is restricted to Eurasia and includes the genera Archihyoscyamus, Anisodus, Atropa, Atropanthe, Hyoscyamus, Physochlaina, Przewalskia and Scopolia. Even though the monophyly of Hyoscyameae is strongly supported, the relationships of the taxa within the tribe remain unclear. Chloroplast markers have been widely used to elucidate plant relationships at low taxonomic levels. Identification of variable chloroplast intergenic regions has been developed based on comparative genomics of chloroplast genomes, but these regions have a narrow phylogenetic utility. In this study, we present the chloroplast genome sequence of Hyoscyamus niger and make comparisons to other solanaceous plastid genomes in terms of gene order, gene and intron content, editing sites, origins of replication, repeats, and hypothetical open reading frames. We developed and sequenced three variable plastid markers from eight species to elucidate relationships within the tribe Hyoscyameae. The presence of a horizontally transferred intron in the mitochondrial cox1 gene of some species of the tribe is considered here a likely synapomorphy uniting five genera of the Hyoscyameae. Alternatively, the cox1 intron could be a homoplasious character acquired twice within the tribe. A homoplasious inversion in the intergenic plastid spacer trnC-psbM was recognized as a source of bias and removed from the data set used in the phylogenetic analyses. Almost 12 kb of plastid sequence data were not sufficient to completely resolve relationships among genera of Hyoscyameae but some clades were identified. Two alternative hypotheses of the evolution of the genera within the tribe are proposed.


Subject(s)
Genome, Chloroplast , Hyoscyamus/genetics , Phylogeny , Base Sequence , DNA Primers , Hyoscyamus/classification , Introns , Open Reading Frames , Polymerase Chain Reaction , RNA Editing , Replication Origin
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