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1.
Proc Natl Acad Sci U S A ; 120(50): e2304411120, 2023 Dec 12.
Article in English | MEDLINE | ID: mdl-38048469

ABSTRACT

Addressing the ongoing biodiversity crisis requires identifying the winners and losers of global change. Species are often categorized based on how they respond to habitat loss; for example, species restricted to natural environments, those that most often occur in anthropogenic habitats, and generalists that do well in both. However, species might switch habitat affiliations across time and space: an organism may venture into human-modified areas in benign regions but retreat into thermally buffered forested habitats in areas with high temperatures. Here, we apply community occupancy models to a large-scale camera trapping dataset with 29 mammal species distributed over 2,485 sites across the continental United States, to ask three questions. First, are species' responses to forest and anthropogenic habitats consistent across continental scales? Second, do macroclimatic conditions explain spatial variation in species responses to land use? Third, can species traits elucidate which taxa are most likely to show climate-dependent habitat associations? We found that all species exhibited significant spatial variation in how they respond to land-use, tending to avoid anthropogenic areas and increasingly use forests in hotter regions. In the hottest regions, species occupancy was 50% higher in forested compared to open habitats, whereas in the coldest regions, the trend reversed. Larger species with larger ranges, herbivores, and primary predators were more likely to change their habitat affiliations than top predators, which consistently affiliated with high forest cover. Our findings suggest that climatic conditions influence species' space-use and that maintaining forest cover can help protect mammals from warming climates.


Subject(s)
Ecosystem , Mammals , Animals , Humans , Temperature , Forests , Biodiversity , North America , Conservation of Natural Resources
2.
Conserv Biol ; : e14221, 2023 Nov 08.
Article in English | MEDLINE | ID: mdl-37937455

ABSTRACT

Reliable maps of species distributions are fundamental for biodiversity research and conservation. The International Union for Conservation of Nature (IUCN) range maps are widely recognized as authoritative representations of species' geographic limits, yet they might not always align with actual occurrence data. In recent area of habitat (AOH) maps, areas that are not habitat have been removed from IUCN ranges to reduce commission errors, but their concordance with actual species occurrence also remains untested. We tested concordance between occurrences recorded in camera trap surveys and predicted occurrences from the IUCN and AOH maps for 510 medium- to large-bodied mammalian species in 80 camera trap sampling areas. Across all areas, cameras detected only 39% of species expected to occur based on IUCN ranges and AOH maps; 85% of the IUCN only mismatches occurred within 200 km of range edges. Only 4% of species occurrences were detected by cameras outside IUCN ranges. The probability of mismatches between cameras and the IUCN range was significantly higher for smaller-bodied mammals and habitat specialists in the Neotropics and Indomalaya and in areas with shorter canopy forests. Our findings suggest that range and AOH maps rarely underrepresent areas where species occur, but they may more often overrepresent ranges by including areas where a species may be absent, particularly at range edges. We suggest that combining range maps with data from ground-based biodiversity sensors, such as camera traps, provides a richer knowledge base for conservation mapping and planning.


Combinación de censos con fototrampas y mapas de extensión de la UICN para incrementar el conocimiento sobre la distribución de las especies Resumen Los mapas confiables de la distribución de las especies son fundamentales para la investigación y conservación de la biodiversidad. Los mapas de distribución de la Unión Internacional para la Conservación de la Naturaleza (UICN) están reconocidos como representaciones de autoridad de los límites geográficos de las especies, aunque no siempre se alinean con los datos actuales de su presencia. En los mapas recientes de área de hábitat (ADH), las áreas que no son hábitat han sido eliminadas de la distribución de la UICN para reducir los errores de comisión, pero su concordancia con la presencia actual de las especies tampoco ha sido analizada. Analizamos la concordancia entre la presencia registrada por los censos de fototrampas y pronosticamos la presencia a partir de los mapas de la UICN y de ADH de 510 especies de mamíferos de talla mediana a grande en 80 áreas de muestreo de fototrampas. Las cámaras detectaron sólo el 39% de las especies esperadas con base en la distribución de la UICN y los mapas de ADH en todas las áreas; el 85% de las disparidades con la UICN ocurrieron dentro de los 200 km a partir del borde de la distribución. Sólo el 4% de la presencia de las especies fue detectada por las cámaras ubicadas fuera de la distribución de la UICN. La probabilidad de disparidad entre las cámaras y la UICN fue significativamente mayor para los mamíferos de talla pequeña y para los especialistas de hábitat en las regiones Neotropical e Indomalaya y en áreas con doseles forestales más bajos. Nuestros hallazgos sugieren que los mapas de distribución y ADH pocas veces subrepresentan las áreas con presencia de las especies, pero con frecuencia pueden sobrerrepresentar la distribución al incluir áreas en donde las especies pueden estar ausentes, en particular los bordes de la distribución. Sugerimos que la combinación de los mapas de distribución con los sensores de biodiversidad en tierra, como las fototrampas, proporciona una base más rica de conocimiento para el mapeo y la planeación de la conservación.

3.
Proc Biol Sci ; 289(1978): 20220457, 2022 07 13.
Article in English | MEDLINE | ID: mdl-35858066

ABSTRACT

The structure of forest mammal communities appears surprisingly consistent across the continental tropics, presumably due to convergent evolution in similar environments. Whether such consistency extends to mammal occupancy, despite variation in species characteristics and context, remains unclear. Here we ask whether we can predict occupancy patterns and, if so, whether these relationships are consistent across biogeographic regions. Specifically, we assessed how mammal feeding guild, body mass and ecological specialization relate to occupancy in protected forests across the tropics. We used standardized camera-trap data (1002 camera-trap locations and 2-10 years of data) and a hierarchical Bayesian occupancy model. We found that occupancy varied by regions, and certain species characteristics explained much of this variation. Herbivores consistently had the highest occupancy. However, only in the Neotropics did we detect a significant effect of body mass on occupancy: large mammals had lowest occupancy. Importantly, habitat specialists generally had higher occupancy than generalists, though this was reversed in the Indo-Malayan sites. We conclude that habitat specialization is key for understanding variation in mammal occupancy across regions, and that habitat specialists often benefit more from protected areas, than do generalists. The contrasting examples seen in the Indo-Malayan region probably reflect distinct anthropogenic pressures.


Subject(s)
Ecosystem , Forests , Animals , Bayes Theorem , Biodiversity , Conservation of Natural Resources , Herbivory , Mammals
4.
Glob Chang Biol ; 28(24): 7205-7216, 2022 12.
Article in English | MEDLINE | ID: mdl-36172946

ABSTRACT

The spatial aggregation of species pairs often increases with the ecological similarity of the species involved. However, the way in which environmental conditions and anthropogenic activity affect the relationship between spatial aggregation and ecological similarity remains unknown despite the potential for spatial associations to affect species interactions, ecosystem function, and extinction risk. Given that human disturbance has been shown to both increase and decrease spatial associations among species pairs, ecological similarity may have a role in mediating these patterns. Here, we test the influences of habitat diversity, primary productivity, human population density, and species' ecological similarity based on functional traits (i.e., functional trait similarity) on spatial associations among tropical forest mammals. Large mammals are highly sensitive to anthropogenic change and therefore susceptible to changes in interspecific spatial associations. Using two-species occupancy models and camera trap data, we quantified the spatial overlap of 1216 species pairs from 13 tropical forest protected areas around the world. We found that the association between ecological similarity and interspecific species associations depended on surrounding human density. Specifically, aggregation of ecologically similar species was more than an order of magnitude stronger in landscapes with the highest human density compared to those with the lowest human density, even though all populations occurred within protected areas. Human-induced changes in interspecific spatial associations have been shown to alter top-down control by predators, increase disease transmission and increase local extinction rates. Our results indicate that anthropogenic effects on the distribution of wildlife within protected areas are already occurring and that impacts on species interactions, ecosystem functions, and extinction risk warrant further investigation.


Subject(s)
Biodiversity , Ecosystem , Animals , Humans , Forests , Mammals , Population Density
5.
Proc Biol Sci ; 288(1945): 20202098, 2021 02 24.
Article in English | MEDLINE | ID: mdl-33593187

ABSTRACT

A variety of factors can affect the biodiversity of tropical mammal communities, but their relative importance and directionality remain uncertain. Previous global investigations of mammal functional diversity have relied on range maps instead of observational data to determine community composition. We test the effects of species pools, habitat heterogeneity, primary productivity and human disturbance on the functional diversity (dispersion and richness) of mammal communities using the largest standardized tropical forest camera trap monitoring system, the Tropical Ecology Assessment and Monitoring (TEAM) Network. We use occupancy values derived from the camera trap data to calculate occupancy-weighted functional diversity and use Bayesian generalized linear regression to determine the effects of multiple predictors. Mammal community functional dispersion increased with primary productivity, while functional richness decreased with human-induced local extinctions and was significantly lower in Madagascar than other tropical regions. The significant positive relationship between functional dispersion and productivity was evident only when functional dispersion was weighted by species' occupancies. Thus, observational data from standardized monitoring can reveal the drivers of mammal communities in ways that are not readily apparent from range map-based studies. The positive association between occupancy-weighted functional dispersion of tropical forest mammal communities and primary productivity suggests that unique functional traits may be more beneficial in more productive ecosystems and may allow species to persist at higher abundances.


Subject(s)
Biodiversity , Ecosystem , Animals , Bayes Theorem , Forests , Humans , Madagascar , Mammals , Tropical Climate
6.
Proc Natl Acad Sci U S A ; 115(8): 1837-1842, 2018 02 20.
Article in English | MEDLINE | ID: mdl-29432167

ABSTRACT

Knowledge about the biogeographic affinities of the world's tropical forests helps to better understand regional differences in forest structure, diversity, composition, and dynamics. Such understanding will enable anticipation of region-specific responses to global environmental change. Modern phylogenies, in combination with broad coverage of species inventory data, now allow for global biogeographic analyses that take species evolutionary distance into account. Here we present a classification of the world's tropical forests based on their phylogenetic similarity. We identify five principal floristic regions and their floristic relationships: (i) Indo-Pacific, (ii) Subtropical, (iii) African, (iv) American, and (v) Dry forests. Our results do not support the traditional neo- versus paleotropical forest division but instead separate the combined American and African forests from their Indo-Pacific counterparts. We also find indications for the existence of a global dry forest region, with representatives in America, Africa, Madagascar, and India. Additionally, a northern-hemisphere Subtropical forest region was identified with representatives in Asia and America, providing support for a link between Asian and American northern-hemisphere forests.


Subject(s)
Forests , Phylogeny , Plants/classification , Plants/genetics , Tropical Climate , Biodiversity , Conservation of Natural Resources , Environmental Monitoring
7.
Am J Psychoanal ; 81(3): 301-325, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34282259

ABSTRACT

Mind is multi-levelled displaying an eons-long prehistory, while as Freud well knew civilization is new and frail: in biological evolution Thanatos long antecedes Eros. Complex intraspecies interchanges in higher animals proceeding by analogic communication give a firm place to Freudian Dingvorstellungen. Self-recognition and reflective thought come exceedingly late, in apes, requiring affectionate baby-mother mirroring. Deriving from inquiry on ego-dystonic neuroses, psychoanalysis must in the Age of Media deal with ego-syntonic pathologies sporting a demise of self-observation and self-reflection: borderline, autistic and autistoid disturbances. The 'epidemy of autism' offers fertile ground for very early psychoanalytic intervention, here briefly illustrated clinically. But on the other side, adolescent and post-adolescent disturbances cover a range going from autistoid retraction to more and more defiant if not violent protagonistic self-begettings, often propelled by overriding feelings of victimhood: filio-parental violence is the offshoot. Postmodernist ideologies accompany and fuel such trends.


Subject(s)
Psychoanalysis , Psychoanalytic Therapy , Adolescent , Ego , Freudian Theory , Humans , Neurotic Disorders , Psychoanalytic Theory , Violence
8.
PLoS Biol ; 14(1): e1002357, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26785119

ABSTRACT

Extinction rates in the Anthropocene are three orders of magnitude higher than background and disproportionately occur in the tropics, home of half the world's species. Despite global efforts to combat tropical species extinctions, lack of high-quality, objective information on tropical biodiversity has hampered quantitative evaluation of conservation strategies. In particular, the scarcity of population-level monitoring in tropical forests has stymied assessment of biodiversity outcomes, such as the status and trends of animal populations in protected areas. Here, we evaluate occupancy trends for 511 populations of terrestrial mammals and birds, representing 244 species from 15 tropical forest protected areas on three continents. For the first time to our knowledge, we use annual surveys from tropical forests worldwide that employ a standardized camera trapping protocol, and we compute data analytics that correct for imperfect detection. We found that occupancy declined in 22%, increased in 17%, and exhibited no change in 22% of populations during the last 3-8 years, while 39% of populations were detected too infrequently to assess occupancy changes. Despite extensive variability in occupancy trends, these 15 tropical protected areas have not exhibited systematic declines in biodiversity (i.e., occupancy, richness, or evenness) at the community level. Our results differ from reports of widespread biodiversity declines based on aggregated secondary data and expert opinion and suggest less extreme deterioration in tropical forest protected areas. We simultaneously fill an important conservation data gap and demonstrate the value of large-scale monitoring infrastructure and powerful analytics, which can be scaled to incorporate additional sites, ecosystems, and monitoring methods. In an era of catastrophic biodiversity loss, robust indicators produced from standardized monitoring infrastructure are critical to accurately assess population outcomes and identify conservation strategies that can avert biodiversity collapse.


Subject(s)
Biodiversity , Birds , Conservation of Natural Resources , Forests , Mammals , Animals , Ecology/methods , Tropical Climate
9.
J Insect Sci ; 17(1)2017 Jan 01.
Article in English | MEDLINE | ID: mdl-28423421

ABSTRACT

The current Zika health crisis in the Americas has created an intense interest in mosquito control methods and products. Mosquito vectors of Zika are of the genus Aedes, mainly the yellow fever mosquito, Aedes aegypti. L. The use of repellents to alter mosquito host seeking behavior is an effective method for the prevention of mosquito-borne diseases. A large number of different spray-on repellents and wearable repellent devices are commercially available. The efficacies of many repellents are unknown. This study focuses on the efficacy of eleven different repellents in reducing the number of Ae. aegypti female mosquitoes attracted to human bait. We performed attraction-inhibition assays using a taxis cage in a wind tunnel setting. One person was placed upwind of the taxis cage and the mosquito movement towards or away from the person was recorded. The person was treated with various spray-on repellents or equipped with different mosquito repellent devices. We found that the spray-on repellents containing N,N-Diethyl-meta-toluamide and p-menthane-3,8-diol had the highest efficacy in repelling mosquitoes compared to repellents with other ingredients. From the five wearable devices that we tested, only the one that releases Metofluthrin significantly reduced the numbers of attracted mosquitoes. The citronella candle had no effect. We conclude that many of the products that we tested that were marketed as repellents do not reduce mosquito attraction to humans.


Subject(s)
Aedes , Insect Repellents , Mosquito Control , Aedes/physiology , Animals , Chemotaxis , Female , Humans
11.
Ecol Appl ; 26(4): 1098-111, 2016 Jun.
Article in English | MEDLINE | ID: mdl-27509751

ABSTRACT

The conservation of tropical forest carbon stocks offers the opportunity to curb climate change by reducing greenhouse gas emissions from deforestation and simultaneously conserve biodiversity. However, there has been considerable debate about the extent to which carbon stock conservation will provide benefits to biodiversity in part because whether forests that contain high carbon density in their aboveground biomass also contain high animal diversity is unknown. Here, we empirically examined medium to large bodied ground-dwelling mammal and bird (hereafter "wildlife") diversity and carbon stock levels within the tropics using camera trap and vegetation data from a pantropical network of sites. Specifically, we tested whether tropical forests that stored more carbon contained higher wildlife species richness, taxonomic diversity, and trait diversity. We found that carbon stocks were not a significant predictor for any of these three measures of diversity, which suggests that benefits for wildlife diversity will not be maximized unless wildlife diversity is explicitly taken into account; prioritizing carbon stocks alone will not necessarily meet biodiversity conservation goals. We recommend conservation planning that considers both objectives because there is the potential for more wildlife diversity and carbon stock conservation to be achieved for the same total budget if both objectives are pursued in tandem rather than independently. Tropical forests with low elevation variability and low tree density supported significantly higher wildlife diversity. These tropical forest characteristics may provide more affordable proxies of wildlife diversity for future multi-objective conservation planning when fine scale data on wildlife are lacking.


Subject(s)
Biodiversity , Birds/physiology , Carbon , Forests , Mammals/physiology , Tropical Climate , Animals , Conservation of Natural Resources , Environmental Monitoring
12.
Philos Trans R Soc Lond B Biol Sci ; 378(1881): 20220232, 2023 07 17.
Article in English | MEDLINE | ID: mdl-37246379

ABSTRACT

Growing threats to biodiversity demand timely, detailed information on species occurrence, diversity and abundance at large scales. Camera traps (CTs), combined with computer vision models, provide an efficient method to survey species of certain taxa with high spatio-temporal resolution. We test the potential of CTs to close biodiversity knowledge gaps by comparing CT records of terrestrial mammals and birds from the recently released Wildlife Insights platform to publicly available occurrences from many observation types in the Global Biodiversity Information Facility. In locations with CTs, we found they sampled a greater number of days (mean = 133 versus 57 days) and documented additional species (mean increase of 1% of expected mammals). For species with CT data, we found CTs provided novel documentation of their ranges (93% of mammals and 48% of birds). Countries with the largest boost in data coverage were in the historically underrepresented southern hemisphere. Although embargoes increase data providers' willingness to share data, they cause a lag in data availability. Our work shows that the continued collection and mobilization of CT data, especially when combined with data sharing that supports attribution and privacy, has the potential to offer a critical lens into biodiversity. This article is part of the theme issue 'Detecting and attributing the causes of biodiversity change: needs, gaps and solutions'.


Subject(s)
Animals, Wild , Biodiversity , Animals , Mammals , Birds , Knowledge
13.
Nat Ecol Evol ; 7(7): 1092-1103, 2023 07.
Article in English | MEDLINE | ID: mdl-37365343

ABSTRACT

Protected areas (PAs) play a vital role in wildlife conservation. Nonetheless there is concern and uncertainty regarding how and at what spatial scales anthropogenic stressors influence the occurrence dynamics of wildlife populations inside PAs. Here we assessed how anthropogenic stressors influence occurrence dynamics of 159 mammal species in 16 tropical PAs from three biogeographic regions. We quantified these relationships for species groups (habitat specialists and generalists) and individual species. We used long-term camera-trap data (1,002 sites) and fitted Bayesian dynamic multispecies occupancy models to estimate local colonization (the probability that a previously empty site is colonized) and local survival (the probability that an occupied site remains occupied). Multiple covariates at both the local scale and landscape scale influenced mammal occurrence dynamics, although responses differed among species groups. Colonization by specialists increased with local-scale forest cover when landscape-scale fragmentation was low. Survival probability of generalists was higher near the edge than in the core of the PA when landscape-scale human population density was low but the opposite occurred when population density was high. We conclude that mammal occurrence dynamics are impacted by anthropogenic stressors acting at multiple scales including outside the PA itself.


Subject(s)
Biodiversity , Conservation of Natural Resources , Humans , Animals , Bayes Theorem , Forests , Mammals , Animals, Wild
14.
Rev Bras Med Trab ; 20(4): 659-669, 2022.
Article in English | MEDLINE | ID: mdl-37101450

ABSTRACT

The objective of this study was to describe the interventions for the labor reintegration of workers on medical leave due to musculoskeletal and mental health diseases, according to actions related to the worker, the employer, and the workplace. This study consists of a qualitative systematic review, without restriction of publication date, conducted in the Cochrane Central Register of Controlled Trials (CENTRAL) and MEDLINE/PubMed scientific bases. In addition, the Epistemonikos database was used. Nineteen articles were selected. It is observed that all interventions proposed actions with the workers, such as rehabilitation programs, therapies and return to work plans. Regarding the actions in the workplace, only three interventions articulated actions with workers and evaluation of the workplace. Finally, actions with employers were considered in 10 interventions with the objective of involving the employer in the improvement of the workplace and planning for the worker's return to work. It can be seen that interventions for patients with musculoskeletal and mental health disorders can be divided into the following categories: worker-oriented interventions, employer-oriented interventions, and workplace actions. In each of these categories, various interventions can be seen, ranging from multidisciplinary intervention to exercise-based rehabilitation, in the case of musculoskeletal disorders, and occupational therapy to the psychotherapeutic method based on music, for mental health disorders.


El objetivo de este estudio fue describir las intervenciones para la reinserción laboral de trabajadores en licencia médica por enfermedades musculoesqueléticas y de salud mental, en términos de acciones relativas al trabajador, al empleador y al lugar de trabajo. Este estudio consiste en una revisión sistemática cualitativa, sin restricción de fecha de publicación, en las bases científicas de Registro Cochrane Central de Ensayos Controlados (CENTRAL) y MEDLINE/PubMed. Además, se utilizó la base de datos Epistemonikos. Fueron seleccionados 19 artículos. Se observó que todas las intervenciones propusieron acciones con los trabajadores, tales como programas de rehabilitación, terapias y planes de regreso al trabajo. En cuanto a las acciones en el lugar de trabajo, solo tres intervenciones articularon acciones con el trabajador y evaluación del lugar de trabajo. Por último, las acciones con los empleadores fueron consideradas en 10 intervenciones, con el objetivo de involucrar al empleador en las mejorías del lugar de trabajo y planificación para el regreso al trabajo del trabajador. Se puede advertir que las intervenciones para los pacientes con trastornos musculoesqueléticos y de salud mental se pueden dividir en las siguientes categorías: intervenciones orientadas al trabajador, orientadas al empleador, y acciones en el lugar de trabajo. En cada una de estas categorías se pueden apreciar intervenciones variadas, que van desde la intervención multidisciplinaria hasta la rehabilitación en base a ejercicios, en el caso de los trastornos musculoesqueléticos, y de la terapia ocupacional hasta el método psicoterápico basado en la música, para los trastornos de salud mental.

15.
Sci Adv ; 8(5): eabl4183, 2022 Feb 04.
Article in English | MEDLINE | ID: mdl-35119921

ABSTRACT

The lives lost and economic costs of viral zoonotic pandemics have steadily increased over the past century. Prominent policymakers have promoted plans that argue the best ways to address future pandemic catastrophes should entail, "detecting and containing emerging zoonotic threats." In other words, we should take actions only after humans get sick. We sharply disagree. Humans have extensive contact with wildlife known to harbor vast numbers of viruses, many of which have not yet spilled into humans. We compute the annualized damages from emerging viral zoonoses. We explore three practical actions to minimize the impact of future pandemics: better surveillance of pathogen spillover and development of global databases of virus genomics and serology, better management of wildlife trade, and substantial reduction of deforestation. We find that these primary pandemic prevention actions cost less than 1/20th the value of lives lost each year to emerging viral zoonoses and have substantial cobenefits.

16.
Nat Commun ; 13(1): 7102, 2022 11 19.
Article in English | MEDLINE | ID: mdl-36402775

ABSTRACT

An animal's daily use of time (their "diel activity") reflects their adaptations, requirements, and interactions, yet we know little about the underlying processes governing diel activity within and among communities. Here we examine whether community-level activity patterns differ among biogeographic regions, and explore the roles of top-down versus bottom-up processes and thermoregulatory constraints. Using data from systematic camera-trap networks in 16 protected forests across the tropics, we examine the relationships of mammals' diel activity to body mass and trophic guild. Also, we assess the activity relationships within and among guilds. Apart from Neotropical insectivores, guilds exhibited consistent cross-regional activity in relation to body mass. Results indicate that thermoregulation constrains herbivore and insectivore activity (e.g., larger Afrotropical herbivores are ~7 times more likely to be nocturnal than smaller herbivores), while bottom-up processes constrain the activity of carnivores in relation to herbivores, and top-down processes constrain the activity of small omnivores and insectivores in relation to large carnivores' activity. Overall, diel activity of tropical mammal communities appears shaped by similar processes and constraints among regions reflecting body mass and trophic guilds.


Subject(s)
Carnivora , Forests , Animals , Herbivory , Nutritional Status
17.
Ecology ; 103(9): e3738, 2022 09.
Article in English | MEDLINE | ID: mdl-35567292

ABSTRACT

The Amazon forest has the highest biodiversity on Earth. However, information on Amazonian vertebrate diversity is still deficient and scattered across the published, peer-reviewed, and gray literature and in unpublished raw data. Camera traps are an effective non-invasive method of surveying vertebrates, applicable to different scales of time and space. In this study, we organized and standardized camera trap records from different Amazon regions to compile the most extensive data set of inventories of mammal, bird, and reptile species ever assembled for the area. The complete data set comprises 154,123 records of 317 species (185 birds, 119 mammals, and 13 reptiles) gathered from surveys from the Amazonian portion of eight countries (Brazil, Bolivia, Colombia, Ecuador, French Guiana, Peru, Suriname, and Venezuela). The most frequently recorded species per taxa were: mammals: Cuniculus paca (11,907 records); birds: Pauxi tuberosa (3713 records); and reptiles: Tupinambis teguixin (716 records). The information detailed in this data paper opens up opportunities for new ecological studies at different spatial and temporal scales, allowing for a more accurate evaluation of the effects of habitat loss, fragmentation, climate change, and other human-mediated defaunation processes in one of the most important and threatened tropical environments in the world. The data set is not copyright restricted; please cite this data paper when using its data in publications and we also request that researchers and educators inform us of how they are using these data.


Subject(s)
Forests , Mammals , Animals , Biodiversity , Birds , Brazil , Humans , Reptiles , Vertebrates
18.
Sci Total Environ ; 789: 147946, 2021 Oct 01.
Article in English | MEDLINE | ID: mdl-34058582

ABSTRACT

In a scenario where escalating human activities lead to several environmental changes and, consequently, affect mammal abundance and distribution, ß-diversity may increase due to differences among sites. Using the ecological uniqueness approach, we analyzed ß-diversity patterns of ground-dwelling mammal communities recorded through comprehensive camera trap monitoring within eight tropical forests protected areas in Mesoamerica and South America under variable landscape contexts. We aimed to investigate whether the contribution of single sites (LCBD) and single species (SCBD) to overall ß-diversity could be explained by community metrics and environmental variables, and by species metrics and biological traits, respectively. Total ß-diversity was also partitioned into species replacement and richness difference. We related LCBD to species richness, total relative abundance, functional indices, and environmental variables (tree basal area, protected area size, NDVI, and precipitation seasonality), and SCBD to species naïve occupancy, relative abundance, and morphoecological traits via beta regression. Our findings showed that LCBD was primarily explained by variation in species richness, rather than relative abundance and functional metrics. Protected area size and tree basal area were also important in explaining variation in LCBD. SCBD was strongly related to naïve occupancy and relative abundance, but not to biological traits, such as body mass, trophic energy level, activity cycle, and taxonomic category. Local ß-diversity was a result of species replacements and to a lesser extent differences in species richness. Our approach was useful in examining and comparing the ecological uniqueness among different sites, revealing the regional scale current status of mammal diversity. High LCBD values comprised sites embedded within smaller habitat extents, hosting lower tree basal areas, and harboring low species richness. SCBD showed that relatively ubiquitous species that occur at variable abundances across sites contributed most to ß-diversity.


Subject(s)
Ecosystem , Mammals , Animals , Biodiversity , Forests , Humans , South America , Trees
19.
PLoS One ; 14(3): e0213671, 2019.
Article in English | MEDLINE | ID: mdl-30861045

ABSTRACT

Carnivores have long been used as model organisms to examine mechanisms that allow coexistence among ecologically similar species. Interactions between carnivores, including competition and predation, comprise important processes regulating local community structure and diversity. We use data from an intensive camera-trapping monitoring program across eight Neotropical forest sites to describe the patterns of spatiotemporal organization of a guild of five sympatric cat species: jaguar (Panthera onca), puma (Puma concolor), ocelot (Leopardus pardalis), jaguarundi (Herpailurus yagouaroundi) and margay (Leopardus wiedii). For the three largest cat species, we developed multi-stage occupancy models accounting for habitat characteristics (landscape complexity and prey availability) and models accounting for species interactions (occupancy estimates of potential competitor cat species). Patterns of habitat-use were best explained by prey availability, rather than habitat structure or species interactions, with no evidence of negative associations of jaguar on puma and ocelot occupancy or puma on ocelot occupancy. We further explore temporal activity patterns and overlap of all five felid species. We observed a moderate temporal overlap between jaguar, puma and ocelot, with differences in their activity peaks, whereas higher temporal partitioning was observed between jaguarundi and both ocelot and margay. Lastly, we conducted temporal overlap analysis and calculated species activity levels across study sites to explore if shifts in daily activity within species can be explained by varying levels of local competition pressure. Activity patterns of ocelots, jaguarundis and margays were similarly bimodal across sites, but pumas exhibited irregular activity patterns, most likely as a response to jaguar activity. Activity levels were similar among sites and observed differences were unrelated to competition or intraguild killing risk. Our study reveals apparent spatial and temporal partitioning for most of the species pairs analyzed, with prey abundance being more important than species interactions in governing the local occurrence and spatial distribution of Neotropical forest felids.


Subject(s)
Felidae/physiology , Panthera/physiology , Predatory Behavior , Puma/physiology , Animals , Biodiversity , Body Weight , Brazil , Carnivora , Forests , Geography , Species Specificity , Tropical Climate
20.
Biol Rev Camb Philos Soc ; 93(1): 600-625, 2018 02.
Article in English | MEDLINE | ID: mdl-28766908

ABSTRACT

Much biodiversity data is collected worldwide, but it remains challenging to assemble the scattered knowledge for assessing biodiversity status and trends. The concept of Essential Biodiversity Variables (EBVs) was introduced to structure biodiversity monitoring globally, and to harmonize and standardize biodiversity data from disparate sources to capture a minimum set of critical variables required to study, report and manage biodiversity change. Here, we assess the challenges of a 'Big Data' approach to building global EBV data products across taxa and spatiotemporal scales, focusing on species distribution and abundance. The majority of currently available data on species distributions derives from incidentally reported observations or from surveys where presence-only or presence-absence data are sampled repeatedly with standardized protocols. Most abundance data come from opportunistic population counts or from population time series using standardized protocols (e.g. repeated surveys of the same population from single or multiple sites). Enormous complexity exists in integrating these heterogeneous, multi-source data sets across space, time, taxa and different sampling methods. Integration of such data into global EBV data products requires correcting biases introduced by imperfect detection and varying sampling effort, dealing with different spatial resolution and extents, harmonizing measurement units from different data sources or sampling methods, applying statistical tools and models for spatial inter- or extrapolation, and quantifying sources of uncertainty and errors in data and models. To support the development of EBVs by the Group on Earth Observations Biodiversity Observation Network (GEO BON), we identify 11 key workflow steps that will operationalize the process of building EBV data products within and across research infrastructures worldwide. These workflow steps take multiple sequential activities into account, including identification and aggregation of various raw data sources, data quality control, taxonomic name matching and statistical modelling of integrated data. We illustrate these steps with concrete examples from existing citizen science and professional monitoring projects, including eBird, the Tropical Ecology Assessment and Monitoring network, the Living Planet Index and the Baltic Sea zooplankton monitoring. The identified workflow steps are applicable to both terrestrial and aquatic systems and a broad range of spatial, temporal and taxonomic scales. They depend on clear, findable and accessible metadata, and we provide an overview of current data and metadata standards. Several challenges remain to be solved for building global EBV data products: (i) developing tools and models for combining heterogeneous, multi-source data sets and filling data gaps in geographic, temporal and taxonomic coverage, (ii) integrating emerging methods and technologies for data collection such as citizen science, sensor networks, DNA-based techniques and satellite remote sensing, (iii) solving major technical issues related to data product structure, data storage, execution of workflows and the production process/cycle as well as approaching technical interoperability among research infrastructures, (iv) allowing semantic interoperability by developing and adopting standards and tools for capturing consistent data and metadata, and (v) ensuring legal interoperability by endorsing open data or data that are free from restrictions on use, modification and sharing. Addressing these challenges is critical for biodiversity research and for assessing progress towards conservation policy targets and sustainable development goals.


Subject(s)
Animal Distribution/physiology , Biodiversity , Environmental Monitoring/methods , Animals , Models, Biological
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