Search | VHL CLAP/WR-PAHO/WHO

1.

The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development.

Chen, Xiao; Bracht, John R; Goldman, Aaron David; Dolzhenko, Egor; Clay, Derek M; Swart, Estienne C; Perlman, David H; Doak, Thomas G; Stuart, Andrew; Amemiya, Chris T; Sebra, Robert P; Landweber, Laura F.

Cell ; 158(5): 1187-1198, 2014 Aug 28.

Article in English | MEDLINE | ID: mdl-25171416

2.

Emergence of a Homo sapiens-specific gene family and chromosome 16p11.2 CNV susceptibility.

Nuttle, Xander; Giannuzzi, Giuliana; Duyzend, Michael H; Schraiber, Joshua G; Narvaiza, Iñigo; Sudmant, Peter H; Penn, Osnat; Chiatante, Giorgia; Malig, Maika; Huddleston, John; Benner, Chris; Camponeschi, Francesca; Ciofi-Baffoni, Simone; Stessman, Holly A F; Marchetto, Maria C N; Denman, Laura; Harshman, Lana; Baker, Carl; Raja, Archana; Penewit, Kelsi; Janke, Nicolette; Tang, W Joyce; Ventura, Mario; Banci, Lucia; Antonacci, Francesca; Akey, Joshua M; Amemiya, Chris T; Gage, Fred H; Reymond, Alexandre; Eichler, Evan E.

Nature ; 536(7615): 205-9, 2016 08 11.

Article in English | MEDLINE | ID: mdl-27487209

3.

Assessing Protein Sequence Database Suitability Using De Novo Sequencing.

Johnson, Richard S; Searle, Brian C; Nunn, Brook L; Gilmore, Jason M; Phillips, Molly; Amemiya, Chris T; Heck, Michelle; MacCoss, Michael J.

Mol Cell Proteomics ; 19(1): 198-208, 2020 01.

Article in English | MEDLINE | ID: mdl-31732549

4.

The African coelacanth genome provides insights into tetrapod evolution.

Amemiya, Chris T; Alföldi, Jessica; Lee, Alison P; Fan, Shaohua; Philippe, Hervé; Maccallum, Iain; Braasch, Ingo; Manousaki, Tereza; Schneider, Igor; Rohner, Nicolas; Organ, Chris; Chalopin, Domitille; Smith, Jeramiah J; Robinson, Mark; Dorrington, Rosemary A; Gerdol, Marco; Aken, Bronwen; Biscotti, Maria Assunta; Barucca, Marco; Baurain, Denis; Berlin, Aaron M; Blatch, Gregory L; Buonocore, Francesco; Burmester, Thorsten; Campbell, Michael S; Canapa, Adriana; Cannon, John P; Christoffels, Alan; De Moro, Gianluca; Edkins, Adrienne L; Fan, Lin; Fausto, Anna Maria; Feiner, Nathalie; Forconi, Mariko; Gamieldien, Junaid; Gnerre, Sante; Gnirke, Andreas; Goldstone, Jared V; Haerty, Wilfried; Hahn, Mark E; Hesse, Uljana; Hoffmann, Steve; Johnson, Jeremy; Karchner, Sibel I; Kuraku, Shigehiro; Lara, Marcia; Levin, Joshua Z; Litman, Gary W; Mauceli, Evan; Miyake, Tsutomu.

Nature ; 496(7445): 311-6, 2013 Apr 18.

Article in English | MEDLINE | ID: mdl-23598338

5.

Editorial.

Amemiya, Chris T.

J Exp Zool B Mol Dev Evol ; 340(8): 481-483, 2023 12.

Article in English | MEDLINE | ID: mdl-38031502

6.

Discovery of large genomic inversions using long range information.

Eslami Rasekh, Marzieh; Chiatante, Giorgia; Miroballo, Mattia; Tang, Joyce; Ventura, Mario; Amemiya, Chris T; Eichler, Evan E; Antonacci, Francesca; Alkan, Can.

BMC Genomics ; 18(1): 65, 2017 01 10.

Article in English | MEDLINE | ID: mdl-28073353

7.

Characterization of Somatically-Eliminated Genes During Development of the Sea Lamprey (Petromyzon marinus).

Bryant, Stephanie A; Herdy, Joseph R; Amemiya, Chris T; Smith, Jeramiah J.

Mol Biol Evol ; 33(9): 2337-44, 2016 09.

Article in English | MEDLINE | ID: mdl-27288344

8.

Unusual Diversity of Myoglobin Genes in the Lungfish.

Koch, Jonas; Lüdemann, Julia; Spies, Rieke; Last, Marco; Amemiya, Chris T; Burmester, Thorsten.

Mol Biol Evol ; 33(12): 3033-3041, 2016 12.

Article in English | MEDLINE | ID: mdl-27512111

9.

Morphological And Molecular Analyses of an Anatomical Novelty: The Pelvic Fin Filaments of the South American Lungfish.

Lima, Sergio Q; Costa, Carinne M; Amemiya, Chris T; Schneider, Igor.

J Exp Zool B Mol Dev Evol ; 328(1-2): 97-105, 2017 01.

Article in English | MEDLINE | ID: mdl-27862964

10.

Molecular cytogenetic differentiation of paralogs of Hox paralogs in duplicated and re-diploidized genome of the North American paddlefish (Polyodon spathula).

Symonová, Radka; Havelka, Milos; Amemiya, Chris T; Howell, William Mike; Korínková, Tereza; Flajshans, Martin; Gela, David; Ráb, Petr.

BMC Genet ; 18(1): 19, 2017 03 02.

Article in English | MEDLINE | ID: mdl-28253860

11.

Establishing and maintaining primary cell cultures derived from the ctenophore Mnemiopsis leidyi.

Vandepas, Lauren E; Warren, Kaitlyn J; Amemiya, Chris T; Browne, William E.

J Exp Biol ; 220(Pt 7): 1197-1201, 2017 04 01.

Article in English | MEDLINE | ID: mdl-28137975

12.

Pillars Article: Somatic Diversification of Variable Lymphocyte Receptors in the Agnathan Sea Lamprey. Nature. 2004. 430: 174-180.

Pancer, Zeev; Amemiya, Chris T; Ehrhardt, Götz R A; Ceitlin, Jill; Gartland, G Larry; Cooper, Max D.

J Immunol ; 201(5): 1336-1342, 2018 09 01.

Article in English | MEDLINE | ID: mdl-30127063

13.

Genomic restructuring in the Tasmanian devil facial tumour: chromosome painting and gene mapping provide clues to evolution of a transmissible tumour.

Deakin, Janine E; Bender, Hannah S; Pearse, Anne-Maree; Rens, Willem; O'Brien, Patricia C M; Ferguson-Smith, Malcolm A; Cheng, Yuanyuan; Morris, Katrina; Taylor, Robyn; Stuart, Andrew; Belov, Katherine; Amemiya, Chris T; Murchison, Elizabeth P; Papenfuss, Anthony T; Graves, Jennifer A Marshall.

PLoS Genet ; 8(2): e1002483, 2012.

Article in English | MEDLINE | ID: mdl-22359511

14.

SCPP genes in the coelacanth: tissue mineralization genes shared by sarcopterygians.

Kawasaki, Kazuhiko; Amemiya, Chris T.

J Exp Zool B Mol Dev Evol ; 322(6): 390-402, 2014 Sep.

Article in English | MEDLINE | ID: mdl-25243252

15.

Genome complexity in the coelacanth is reflected in its adaptive immune system.

Saha, Nil Ratan; Ota, Tatsuya; Litman, Gary W; Hansen, John; Parra, Zuly; Hsu, Ellen; Buonocore, Francesco; Canapa, Adriana; Cheng, Jan-Fang; Amemiya, Chris T.

J Exp Zool B Mol Dev Evol ; 322(6): 438-63, 2014 Sep.

Article in English | MEDLINE | ID: mdl-24464682

16.

Atypical RNAs in the coelacanth transcriptome.

Nitsche, Anne; Doose, Gero; Tafer, Hakim; Robinson, Mark; Saha, Nil Ratan; Gerdol, Marco; Canapa, Adriana; Hoffmann, Steve; Amemiya, Chris T; Stadler, Peter F.

J Exp Zool B Mol Dev Evol ; 322(6): 342-51, 2014 Sep.

Article in English | MEDLINE | ID: mdl-24174405

17.

Evolution of adaptive immune recognition in jawless vertebrates.

Saha, Nil Ratan; Smith, Jeramiah; Amemiya, Chris T.

Semin Immunol ; 22(1): 25-33, 2010 Feb.

Article in English | MEDLINE | ID: mdl-20056434

18.

A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome.

Smith, Jeramiah J; Sumiyama, Kenta; Amemiya, Chris T.

Mol Biol Evol ; 29(3): 985-93, 2012 Mar.

Article in English | MEDLINE | ID: mdl-22045999

19.

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.

Mikkelsen, Tarjei S; Wakefield, Matthew J; Aken, Bronwen; Amemiya, Chris T; Chang, Jean L; Duke, Shannon; Garber, Manuel; Gentles, Andrew J; Goodstadt, Leo; Heger, Andreas; Jurka, Jerzy; Kamal, Michael; Mauceli, Evan; Searle, Stephen M J; Sharpe, Ted; Baker, Michelle L; Batzer, Mark A; Benos, Panayiotis V; Belov, Katherine; Clamp, Michele; Cook, April; Cuff, James; Das, Radhika; Davidow, Lance; Deakin, Janine E; Fazzari, Melissa J; Glass, Jacob L; Grabherr, Manfred; Greally, John M; Gu, Wanjun; Hore, Timothy A; Huttley, Gavin A; Kleber, Michael; Jirtle, Randy L; Koina, Edda; Lee, Jeannie T; Mahony, Shaun; Marra, Marco A; Miller, Robert D; Nicholls, Robert D; Oda, Mayumi; Papenfuss, Anthony T; Parra, Zuly E; Pollock, David D; Ray, David A; Schein, Jacqueline E; Speed, Terence P; Thompson, Katherine; VandeBerg, John L; Wade, Claire M.

Nature ; 447(7141): 167-77, 2007 May 10.

Article in English | MEDLINE | ID: mdl-17495919

20.

Mouse and zebrafish Hoxa3 orthologues have nonequivalent in vivo protein function.

Chen, Lizhen; Zhao, Peng; Wells, Lance; Amemiya, Chris T; Condie, Brian G; Manley, Nancy R.

Proc Natl Acad Sci U S A ; 107(23): 10555-60, 2010 Jun 08.

Article in English | MEDLINE | ID: mdl-20498049

VHL CLAP/WR-PAHO/WHO

Latin-American Center for Perinatology, Woman and Reproductive Health

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