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1.
Soft Matter ; 11(17): 3373-84, 2015 May 07.
Article in English | MEDLINE | ID: mdl-25816111

ABSTRACT

X-ray tomography is a relevant technique for the dynamic follow-up of gas bubbles in an opaque viscoelastic matrix, especially using image analysis. It has been applied here to pieces of fermenting wheat flour dough of various compositions, at two different voxel sizes (15 and 5 µm). The resulting evolution of the main cellular features shows that the creation of cellular structures follows two regimes that are defined by a characteristic time of connectivity, tc [30 and 80 min]: first (t ≤ tc), bubbles grow freely and then (t ≥ tc) they become connected since the percolation of the gas phase is limited by liquid films. During the first regime, bubbles can be tracked and the local strain rate can be measured. Its values (10(-4)-5 × 10(-4) s(-1)) are in agreement with those computed from dough viscosity and internal gas pressure, both of which depend on the composition. For higher porosity, P = 0.64 in our case, and thus occurring in the second regime, different cellular structures are obtained and XRT images show deformed gas cells that display complex shapes. The comparison of these images with confocal laser scanning microscopy images suggests the presence of liquid films that separate these cells. The dough can therefore be seen as a three-phase medium: viscoelastic matrix/gas cell/liquid phase. The contributions of the different levels of matter organization can be integrated by defining a capillary number (C = 0.1-1) that makes it possible to predict the macroscopic dough behavior.


Subject(s)
Fermentation , Flour , Gases/chemistry , Phase Transition , Elasticity , Porosity , Viscosity , X-Ray Microtomography
2.
Neurochirurgie ; 53(2-3 Pt 1): 76-84, 2007 Jun.
Article in French | MEDLINE | ID: mdl-17445840

ABSTRACT

BACKGROUND: Intracranial ependymomas are rare in adults and histopathological prognostic factors are poorly determined. PURPOSE: A retrospective multicentric study was conducted in France in order to assess the prognostic value of histology. MATERIAL: Between 1990 and 2004, 216 adult patients with newly diagnosed ependymomas were treated in 19 French centers. Eligibility required institutional histopathological confirmation of an ependymoma and available clinical history and MRI features (see comparison paper). METHODS: Histological preparations and one paraffin embedded block from each patient were sent to Pr D. Figarella-Branger in Marseille. Central review by four neuropathologists (D. Figarella-Branger, A. Maues de Paula, C. Fernandez and A. Jouvet) was performed. Specimens for which all pathologists agreed with the histological diagnosis of ependymomas were included, whereas cases for which all disagree were excluded and reclassified. In the event of doubt and/or discrepancies between pathologists immunostaining was performed in order to reach a consensus diagnosis. Diagnostic of ependymomas was confirmed in 121 cases (56%). In theses cases, ependymomas were classified according to the WHO system (subtype and grade). The potential prognostic value (overall survival OS and disease free survival DFS) of the following histological parameters was examined: perivascular pseudorosettes, ependymal rosettes, hyalinized vessels, mitotic index, microvascular proliferation, necrosis, area of increased cellularity, nuclear atypia, brain invasion and Mib-1 labelling index. RESULTS: Among the 121 ependymomas, 88 were grade II (47 classic, 17 cellular, 2 papillar, 6 clear cells and 16 tanicytic) and 33 grade III. WHO grading, occurrence of microvascular proliferation, necrosis, nuclear atypia and high proliferative index were correlated with both OS and DFS. Moreover, quantification of certain parameters enabled a reproducible grading system correlated with both OS and DFS.


Subject(s)
Brain Neoplasms/mortality , Brain Neoplasms/pathology , Ependymoma/mortality , Ependymoma/pathology , Adult , Brain Neoplasms/surgery , Disease Progression , Ependymoma/surgery , Female , Humans , Male , Neoplasm Staging , Neurosurgical Procedures , Prognosis , Retrospective Studies , Survival Rate
3.
Biochim Biophys Acta ; 1210(1): 23-6, 1993 Dec 02.
Article in English | MEDLINE | ID: mdl-8257715

ABSTRACT

A circannual variation in the fatty acid composition of plasma and high-density lipoprotein (HDL) phospholipids occurs in rainbow trout (Oncorhynchus mykiss) in response to seasonal alterations in environmental water temperature. The compensatory mechanisms employed in cold adaptation include a decrease in the level of saturated fatty acids and of monoenes of the oleic acid (n-9) family and an increase in the level of unsaturated fatty acids of the linolenic acid (n-3) family, especially in docosahexaenoic acid (22:6(n-3)). The present study demonstrates that in trout, a poikilothermic vertebrate, the weight percentage of 22:6(n-3) in HDL phospholipids is inversely correlated (r = -0.88, P < 0.0001) with water temperature.


Subject(s)
Fatty Acids/blood , Lipoproteins, HDL/blood , Seasons , Animals , Female , Male , Oncorhynchus mykiss , Temperature
4.
J Mol Biol ; 299(3): 615-28, 2000 Jun 09.
Article in English | MEDLINE | ID: mdl-10835272

ABSTRACT

Initiation factor 3 (IF3) acts to switch the decoding preference of the small ribosomal subunit from elongator to initiator tRNA. The effects of IF3 on the 30 S ribosomal subunit and on the 30 S.mRNA. tRNA(f)(Met) complex were determined by UV-induced RNA crosslinking. Three intramolecular crosslinks in the 16 S rRNA (of the 14 that were monitored by gel electrophoresis) are affected by IF3. These are the crosslinks between C1402 and C1501 within the decoding region, between C967xC1400 joining the end loop of a helix of 16 S rRNA domain III and the decoding region, and between U793 and G1517 joining the 790 end loop of 16 S rRNA domain II and the end loop of the terminal helix. These changes occur even in the 30 S.IF3 complex, indicating they are not mediated through tRNA(f)(Met) or mRNA. UV-induced crosslinks occur between 16 S rRNA position C1400 and tRNA(f)(Met) position U34, in tRNA(f)(Met) the nucleotide adjacent to the 5' anticodon nucleotide, and between 16 S rRNA position C1397 and the mRNA at positions +9 and +10 (where A of the initiator AUG codon is +1). The presence of IF3 reduces both of these crosslinks by twofold and fourfold, respectively. The binding site for IF3 involves the 790 region, some other parts of the 16 S rRNA domain II and the terminal stem/loop region. These are located in the front bottom part of the platform structure in the 30 S subunit, a short distance from the decoding region. The changes that occur in the decoding region, even in the absence of mRNA and tRNA, may be induced by IF3 from a short distance or could be caused by the second IF3 structural domain.


Subject(s)
Escherichia coli , Peptide Initiation Factors/metabolism , RNA, Messenger/metabolism , RNA, Transfer, Met/metabolism , Ribosomes/chemistry , Ribosomes/metabolism , Alkalies/metabolism , Anticodon/genetics , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Base Sequence , Binding Sites/radiation effects , Escherichia coli/chemistry , Escherichia coli/genetics , Hydrolysis , Models, Molecular , Nucleic Acid Conformation , Peptide Initiation Factors/chemistry , Prokaryotic Initiation Factor-3 , Protein Binding/radiation effects , Protein Structure, Tertiary , RNA, Bacterial/chemistry , RNA, Bacterial/genetics , RNA, Bacterial/metabolism , RNA, Messenger/genetics , RNA, Ribosomal, 16S/chemistry , RNA, Ribosomal, 16S/genetics , RNA, Ribosomal, 16S/metabolism , RNA, Transfer, Met/genetics , RNA-Binding Proteins/chemistry , RNA-Binding Proteins/metabolism , Ribosomal Proteins/chemistry , Ribosomal Proteins/metabolism , Ribosomes/genetics , Transcription, Genetic/genetics , Ultraviolet Rays
5.
J Fr Ophtalmol ; 28(2): 159-67, 2005 Feb.
Article in French | MEDLINE | ID: mdl-15851949

ABSTRACT

INTRODUCTION: Idiopathic epiretinal membrane results from detachment of the posterior hyaloid and is believed to be related to naturally occurring defects in the internal limiting membrane (ILM) of the retina. Vitrectomy and peeling are the treatment of choice. Trypan blue 0.15% (TB) stains epiretinal membrane and internal limiting membrane. It allows selective and complete removal, facilitating surgery, with less retinal damage. An ultrastructural study was conducted showing ultrastructural features of idiopathic epiretinal membranes (ERM) and those of the internal limiting membrane and its connections with the retinal side. MATERIAL AND METHODS: After pars plana vitrectomy and induction of posterior vitreous detachment, 0.2 ml TB 0.15% was injected over the ERM in an air-filled eye. The stained tissue was peeled with intraocular forceps. Specimens were at once collected in 4% glutaraldehyde for a transmission electron microscopy study. RESULTS: TB may allow complete and easier ERM and ILM peeling. The staining does not present toxic effects. The major cellular contingent is represented by glial cells, participating actively in neocollagen synthesis. Their presence supports the hypothesis of a migratory movement of retinal cells toward the vitreoretinal side. CONCLUSION: The presence of an intact internal limiting membrane, the absence of optical fibers belonging to the under retina, and the absence of any sign of apoptosis make TB a useful staining agent for ERM and ILM peeling.


Subject(s)
Retina/ultrastructure , Aged , Aged, 80 and over , Female , Humans , Male , Middle Aged , Prospective Studies , Trypan Blue
6.
Int J Dev Biol ; 44(2): 249-52, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10794084

ABSTRACT

Intracellular fatty acid-binding proteins (FABPs) are small and highly conserved cytoplasmic proteins that bind long-chain fatty acids and other hydrophobic ligands. We have examined, as a model for studying intestinal epithelial cell differentiation, the cell-specific and spatio-temporal expression of intestinal fatty acid-binding protein (i-fabp) gene during zebrafish larval development. After molecular cloning of zebrafish I-FABP cDNA, whole-mount in situ hybridization analysis revealed that i-fabp is expressed in the intestinal tube around day 3 postfertilization. By day 4, highest level of i-fabp transcript is encountered in the proximal columnar epithelium. From day 5 onwards, i-fabp is strongly expressed in the anterior intestine and its rostral expansion, slightly expressed in the esophagus mucosa and rectum, while no mRNA could be detected in the posterior intestine. Therefore, the regional differentiation of the intestine precedes first feeding and complete yolk resorption. I-fabp expression in the anterior intestine of the fed larvae is correlated with an intracellular storage of lipid droplets in the enterocytes and the massive synthesis of very low-density lipoprotein particles. In conclusion, the cephalocaudal expression pattern of i-fabp demarcates early during zebrafish gut morphogenesis the anterior fat absorbing to posterior cells of the intestine. This gene could be used as a marker for screening for mutations that affect the events of intestinal epithelial differentiation, cephalocaudal patterning, and asymmetric gut looping morphogenesis.


Subject(s)
Body Patterning , Carrier Proteins/biosynthesis , Intestinal Mucosa/metabolism , Intestines/embryology , Myelin P2 Protein/biosynthesis , Neoplasm Proteins , Nerve Tissue Proteins , Zebrafish Proteins , Amino Acid Sequence , Animals , Carrier Proteins/chemistry , Carrier Proteins/genetics , DNA, Complementary/metabolism , Fatty Acid-Binding Protein 7 , Fatty Acid-Binding Proteins , Gene Expression , In Situ Hybridization , Lipid Metabolism , Molecular Sequence Data , Morphogenesis , Myelin P2 Protein/chemistry , Myelin P2 Protein/genetics , Reverse Transcriptase Polymerase Chain Reaction , Zebrafish/embryology
7.
J Comp Neurol ; 427(4): 546-58, 2000 Nov 27.
Article in English | MEDLINE | ID: mdl-11056463

ABSTRACT

The transport of lipids via the circulatory system of animals constitutes a vital function that uses highly specialized lipoprotein complexes. In insects, a single lipoprotein, lipophorin, serves as a reusable shuttle for the transport of lipids between tissues. We have found that the two nonexchangeable apolipoproteins of lipophorin arise from a common precursor protein, apolipophorin II/I (apoLp-II/I). To examine the mechanisms of transport of lipids and liposoluble substances inside the central nervous system, this report provides the molecular cloning of a cDNA encoding the locust apoLp-II/I. We have recently shown that this precursor protein belongs to a superfamily of large lipid transfer proteins (Babin et al. [1999] J. Mol. Evol. 49:150-160). We determined that, in addition to its expression in the fat body, the locust apoLp-II/I is also expressed in the brain. Part of the signal resulted from fat body tissue associated with the brain; however, apoLp-II/I was strongly expressed and the corresponding protein detected, in pigmented glial cells of the lamina underlying the locust retina and in cells or cellular processes interspersed in the basement membrane. The latter finding strongly suggests an implication of apolipophorins in the transport of retinoids and/or fatty acids to the insect retina.


Subject(s)
Apolipoproteins/metabolism , Carrier Proteins/metabolism , Eye/metabolism , Gene Expression/genetics , Hemolymph/metabolism , Lipoproteins/metabolism , Amino Acid Sequence/genetics , Animals , Apolipoproteins/genetics , Base Sequence , Carrier Proteins/genetics , DNA, Complementary/genetics , Drosophila/genetics , Drosophila/metabolism , Grasshoppers/genetics , Grasshoppers/metabolism , Lipoproteins/genetics , Male , Manduca/genetics , Manduca/metabolism , Molecular Sequence Data , RNA/metabolism , Rabbits
8.
Exp Gerontol ; 36(2): 231-44, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11226739

ABSTRACT

An ultrastructural study of rat hippocampus was performed on young (group 1) and old (group 4) rats receiving daily subcutaneous injections of aluminum L-glutamate and on old untreated rats (group 5). Young controls were treated with sodium L-glutamate (group 2) and physiological saline (group 3). Group 1 showed vacuolated astrocytes with numerous lipofuscin deposits, mitochondrial swelling, a thinning of the myelin sheath, and many multivesicular bodies invading the cytoplasm. Cellular structure did not appear to be affected in groups 2 and 3. Group 4 showed swollen mitochondria, a demyelination process in axonal regions, sizable perivascular oedema with vessel retraction and gliofilament bundles. In this group, lipofuscin deposits in astrocytes were associated with multivesicular bodies that thinned the myelin sheath to the breaking point; however, no excitotoxic glutamate-induced effects were observed. In group 5, extreme cytoplasmic vacuolation was observed, with massive mitochondrial swelling, considerable thinning of the myelin sheath (at times to the breaking point), sizable vacuolar degeneration and gliofilament bundles. These results indicate that ultrastructural alterations in the hippocampus, such as cell vacuolization, massive mitochondrial swelling and the demyelination process, occur with aging and independently of aluminum intoxication. Similar alterations were observed in aluminum L-glutamate-intoxicated young rats, but not in controls. These results are consistent with aluminum-induced acceleration of the aging process.


Subject(s)
Aging/drug effects , Aging/pathology , Glutamates/toxicity , Hippocampus/drug effects , Hippocampus/ultrastructure , Animals , Astrocytes/drug effects , Astrocytes/ultrastructure , Glutamates/administration & dosage , Male , Microscopy, Electron , Mitochondrial Swelling/drug effects , Myelin Sheath/drug effects , Myelin Sheath/ultrastructure , Necrosis , Rats , Rats, Wistar , Vacuoles/drug effects , Vacuoles/ultrastructure
9.
Leuk Res ; 16(5): 537-40, 1992.
Article in English | MEDLINE | ID: mdl-1625480

ABSTRACT

We report on four cases of trisomy 14 as the sole anomaly. Three cases were myelodysplastic syndromes and one was a non-Hodgkin's lymphoma. This anomaly is mainly in myeloid disorders and still remains to be well documented. On the other hand, we show this anomaly to be also a non-random anomaly in lymphoproliferative disorders.


Subject(s)
Anemia, Refractory/genetics , Chromosomes, Human, Pair 14 , Leukemia, Myeloid, Acute/genetics , Precursor Cell Lymphoblastic Leukemia-Lymphoma/genetics , Trisomy , Aged , Aged, 80 and over , Anemia, Refractory, with Excess of Blasts/genetics , Humans , Male , Middle Aged
10.
Bone Marrow Transplant ; 19(7): 741-3, 1997 Apr.
Article in English | MEDLINE | ID: mdl-9156253

ABSTRACT

A 33-year-old man with an atypical course of hypereosinophilic syndrome including malignant hypercalcemia, osteolytic lesions and evolution into severe myelofibrosis was treated by allogeneic bone marrow transplantation after conditioning with cytoxan and total body irradiation. As the transplant was sex-mismatched, chimerism was studied by means of cytogenetic analysis and Y chromosomal DNA amplification by PCR assay. Long-term complete remission has been assessed by normalization of blood cell counts, magnetic resonance imaging and karyotypic analysis. A relapse was observed 40 months after transplantation. The patient remains alive 44 months post-BMT. This case report is compared with those reported in the literature.


Subject(s)
Bone Marrow Transplantation , Hypereosinophilic Syndrome/therapy , Primary Myelofibrosis/therapy , Adult , Humans , Hypereosinophilic Syndrome/physiopathology , Male , Transplantation, Homologous
11.
Bone Marrow Transplant ; 24(12): 1347-9, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10627646

ABSTRACT

Extraneural relapses of medulloblastoma are associated with a very poor outcome. We present two cases of young adults who developed bone marrow metastases after treatment of medulloblastoma. A very good response to a sequentially scheduled combination of carboplatin and etoposide was observed. Then, high-dose chemotherapy was delivered consisting of busulfan and thiotepa followed by infusion of autologous hematopoietic stem cells. Toxicity of the conditioning regimen was acceptable. The patients remained free of disease 20 and 27 months from the time of relapse, respectively. Further studies are needed to evaluate the impact of high-dose chemotherapy in terms of survival of such patients.


Subject(s)
Antineoplastic Agents/therapeutic use , Bone Marrow/pathology , Cerebellar Neoplasms/therapy , Hematopoietic Stem Cell Transplantation , Medulloblastoma/therapy , Adult , Bone Neoplasms/secondary , Cerebellar Neoplasms/complications , Combined Modality Therapy , Disease-Free Survival , Dose-Response Relationship, Drug , Humans , Male , Medulloblastoma/complications , Recurrence , Transplantation Conditioning
12.
J Steroid Biochem Mol Biol ; 38(3): 293-9, 1991 Mar.
Article in English | MEDLINE | ID: mdl-2009221

ABSTRACT

Various phytoestrogens such as formononetin, daidzein, genistein and equol were synthesized. Their purity was assessed by various analytical techniques including melting point determination, thin-layer chromatography (TLC), infra-red spectra (i.r. spectra), nuclear magnetic resonance (1H- and 13C-NMR) and gas chromatography coupled with mass spectrometry (GC-MS). The estrogenic activity of these compounds, as well as biochanin A and coumestrol, was biologically tested by the induction of vitellogenin secretion in yearling sturgeon and compared to the activity of estradiol-17 beta. Pure daidzein, biochanin A, genistein, equol and coumestrol all had estrogenic activity as assessed by their induction of hepatic synthesis of vitellogenin when administrated intraperitoneally to yearling Siberian sturgeon. Coumestrol seemed to be the most potent compound, inducing the most vitellogenin secretion with the lowest dose administered. Formononetin was inactive when administered by the intraperitoneal route. All the phytoestrogens tested were considerably less potent than estradiol-17 beta.


Subject(s)
Estrogens, Non-Steroidal , Estrogens/chemistry , Estrogens/metabolism , Animals , Chromans/chemistry , Chromatography, Thin Layer , Coumestrol/chemistry , Equol , Fishes , Gas Chromatography-Mass Spectrometry , Genistein , Isoflavones/chemistry , Liver/metabolism , Magnetic Resonance Spectroscopy , Phytoestrogens , Plant Preparations , Spectrophotometry, Infrared , Vitellogenins/analysis , Vitellogenins/biosynthesis
13.
Surgery ; 118(6): 1036-40, 1995 Dec.
Article in English | MEDLINE | ID: mdl-7491520

ABSTRACT

BACKGROUND: Cathepsin D is a widely distributed lysosomal acidic endopeptidase. It is an estrogen-regulated protein that is a prognostic factor in breast cancer. The aim of this study was to measure cathepsin D concentrations in thyroid tissues and to correlate these concentrations with clinical and pathologic parameters. METHODS: Cathepsin D and thyroglobulin concentrations were measured in the cytosol of normal thyroid tissues (n = 14), benign nodules (n = 6), and thyroid carcinomas (n = 32) with an immunoradiometric assay. Statistical analysis was based on the Kruskal-Wallis and Wilcoxon tests and on the Spearman rank correlation coefficient. RESULTS: The mean level of cathepsin D, expressed as picomoles per milligram protein minus thyroglobulin, was higher in the 32 carcinomas, 29.1 +/- 15.5, than in the 14 normal thyroid tissues, 8.4 +/- 2.5 (p < 0.001) or in the 6 benign nodules, 11.2 +/- 7.3 (p = 0.003). Cathepsin D concentrations correlated with tumor size; Spearman rank correlation coefficient was rs = 0.44 (p = 0.012). No significant difference was found regarding histologic type. Cathepsin D concentrations were inversely correlated with the thyroglobulin level in the tumor; Spearman rank correlation coefficient was rs = -0.60 (p < 0.001). CONCLUSIONS: Cathepsin D concentration is higher in thyroid carcinoma than in normal thyroid tissue. Increased cathepsin D concentrations correlate with thyroid tumor size but not with histologic type. Further studies should be done to confirm the potential prognostic value of cathepsin D in patients with thyroid carcinomas.


Subject(s)
Cathepsin D/analysis , Thyroid Gland/chemistry , Thyroid Neoplasms/chemistry , Adult , Aged , Aged, 80 and over , Female , Humans , Male , Middle Aged , Reference Values , Thyroglobulin/analysis , Thyroid Neoplasms/pathology
14.
Cancer Genet Cytogenet ; 45(1): 125-9, 1990 Mar.
Article in English | MEDLINE | ID: mdl-2302679

ABSTRACT

We report two cases of t(8;9) with probable breakpoints in 8q12 and 9p21 in malignant lymphoma. In a review of the literature, we found two cases of acute lymphocytic leukemia and one case of malignant lymphoma which probably share the same breakpoints.


Subject(s)
Chromosomes, Human, Pair 8 , Chromosomes, Human, Pair 9 , Lymphoma/genetics , Precursor Cell Lymphoblastic Leukemia-Lymphoma/genetics , Translocation, Genetic , Aged , Child , Female , Genetic Markers , Humans , Karyotyping , Male , Middle Aged
15.
Leuk Lymphoma ; 13(3-4): 349-52, 1994 Apr.
Article in English | MEDLINE | ID: mdl-8049654

ABSTRACT

We report a case of leukemic malignant T-cell lymphoma with mixed small and large cells. The small cells displayed a mature CD8-positive phenotype, a diploid DNA distribution by cell cycle analysis, and structural karyotypic abnormalities. Large cells were near triploid, showed additional structural cytogenetic abnormalities and a more immature membrane phenotype without CD8 expression. Altogether, these data provide suggestive evidence for a clonal evolution from a mature small cell T-cell lymphoma to a more immature large cell proliferation.


Subject(s)
Lymphoma, Non-Hodgkin/pathology , Lymphoma, T-Cell/pathology , Aged , CD8 Antigens/analysis , Cell Cycle , Clone Cells/pathology , DNA, Neoplasm/analysis , Female , Humans , Karyotyping , Lymphoma, Non-Hodgkin/classification , Lymphoma, Non-Hodgkin/genetics , Lymphoma, T-Cell/classification , Lymphoma, T-Cell/genetics , Ploidies
16.
Leuk Lymphoma ; 4(3): 211-3, 1991.
Article in English | MEDLINE | ID: mdl-27458675

ABSTRACT

We report two cases of t(12;13)(p13;q12). One was found in a lymphoid disorder, as previously described, while the second was observed in a myeloproliferative syndrome with hypereosinophilia. As t(12;13) has already been described in association with hypereosinophilia in a case of acute lymphoblastic leukaemia, we suggest that the association of t(12;13) with hypereosinophilia is not random.

17.
J Mol Graph Model ; 19(6): 495-513, 2001.
Article in English | MEDLINE | ID: mdl-11552678

ABSTRACT

Structure models for each of the secondary structure regions from the Escherichia coli 16S rRNA (58 separate elements) were constructed using a constraint satisfaction modelling program to determine which helices deviated from classic A-form geometry. Constraints for each rRNA element included the comparative secondary structure, H-bonding conformations predicted from patterns of base-pair covariation, tertiary interactions predicted from covariation analysis, chemical probing data, rRNA-rRNA crosslinking information, and coordinates from solved structures. Models for each element were built using the MC-SYM modelling algorithm and subsequently were subjected to energy minimization to correct unfavorable geometry. Approximately two-thirds of the structures that result from the input data are very similar to A-form geometry. In the remaining instances, the presence of internal loops and bulges, some sequences (and sequence covariants) and accessory information require deviation from A-form geometry. The structures of regions containing more complex base-pairing arrangements including the central pseudoknot, the 530 region, and the pseudoknot involving base-pairing between G570-U571/A865-C866 and G861-C862/G867-C868 were predicted by this approach. These molecular models provide insight into the connection between patterns of H-bonding, the presence of unpaired nucleotides, and the overall geometry of each element.


Subject(s)
Computer Simulation , Escherichia coli/genetics , Models, Molecular , Nucleic Acid Conformation , RNA, Bacterial/chemistry , RNA, Ribosomal, 16S/chemistry , Base Pairing , Base Sequence , Molecular Sequence Data , RNA , Ribosomes
18.
Toxicol Lett ; 104(1-2): 65-73, 1999 Jan 11.
Article in English | MEDLINE | ID: mdl-10048751

ABSTRACT

Clinical and experimental studies have demonstrated the neurotoxicity of aluminium (Al), notably as a result of lipid peroxidation in vitro. We previously showed that Al is able to cross the blood-brain barrier as an L-glutamate complex and be deposited in rat brain. The present work in young mature rats investigated the in vivo effects of chronic Al-L-glutamate treatment on Al and iron movement in plasma and selected brain regions. Brain lipid peroxidation was determined by evaluating the production of thiobarbituric acid reactive substances (TBARS) and analysing polyunsaturated fatty acids (PUFAs) such as C20:4n-6 and C22:6n-3. Our results indicate that iron concentration was decreased in plasma and that Al accumulated especially in striatum where iron levels were decreased and in the hippocampus where TBARS were increased without PUFA modifications. These data show that Al administered chronically as an L-glutamate complex is neurotoxic in vivo and thus provides a good model for studying Al toxic mechanisms.


Subject(s)
Brain Chemistry/drug effects , Glutamates/toxicity , Iron/metabolism , Lipid Peroxidation/drug effects , Aluminum/metabolism , Animals , Cerebral Cortex/drug effects , Cerebral Cortex/metabolism , Fatty Acids, Unsaturated/metabolism , Glutamates/metabolism , Hippocampus/drug effects , Hippocampus/metabolism , Male , Neostriatum/drug effects , Neostriatum/metabolism , Rats , Rats, Wistar , Thiobarbituric Acid Reactive Substances/metabolism
19.
Mutat Res ; 308(1): 1-9, 1994 Jul 01.
Article in English | MEDLINE | ID: mdl-7516477

ABSTRACT

The naevoid basal-cell carcinoma syndrome (NBCCS) is an autosomal dominant disorder with multiple basal-cell carcinomas, an increased risk for other neoplasms, and various malformations. Chromosome instability has been implicated in the pathogenesis of this syndrome, but these reports are somewhat contradictory. We have investigated five patients, two with confirmed NBCCS and three suspected. No evidence for chromosome instability was found in lymphocytes at three sample times after stimulation using metaphase aberration analysis, sister-chromatid exchange (SCE) in second division cells, or micronuclei. A significant lengthening of the cell cycle was found for the two confirmed NBCCS patients, but not for the suspected cases.


Subject(s)
Basal Cell Nevus Syndrome/genetics , Chromosome Aberrations , Skin Neoplasms/genetics , Adolescent , Adult , Cell Cycle , Female , Humans , Male , Micronucleus Tests , Middle Aged , Sister Chromatid Exchange
20.
Mutat Res ; 332(1-2): 27-32, 1995 Nov.
Article in English | MEDLINE | ID: mdl-7500988

ABSTRACT

The Gorlin syndrome, or naevoid basal-cell carcinoma syndrome (NBCS) is an autosomal dominant disease. It has been suspected for long that this cancer prone disease (multiple basal-cell carcinomas; other malignant or benign proliferations) is a chromosome instability syndrome. We previously reported a lengthening in the cell cycle of lymphocytes from two patients with NBCS. With a larger sample (n = 7), we confirm this disease to be a chromosome instability syndrome, although clearly, expression of this characteristic can vary between patients: (1) spontaneous chromatid breaks occurred more often in a subset of the patients; (2) spontaneous micronuclei were found more frequently in NBCS than in the controls; (3) we confirm the cell cycle to be affected in this disease. As these results were obtained on lymphocytes--a cell lineage not affected in NBCS manifestations--the chromosome instability we found would appear to be part of the general condition of this syndrome.


Subject(s)
Basal Cell Nevus Syndrome/genetics , Chromosome Aberrations , Lymphocytes/pathology , Sister Chromatid Exchange , Adult , Basal Cell Nevus Syndrome/pathology , Cell Cycle/genetics , Female , Humans , Lymphocytes/ultrastructure , Male , Micronucleus Tests , Middle Aged
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