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1.
Breast Cancer Res Treat ; 155(1): 85-97, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26650824

ABSTRACT

The presence or absence of estrogen and progesterone steroid hormone receptor expression (ER, PR) is an essential feature of invasive breast cancer and determines prognosis and endocrine treatment decisions. Among the four ER/PR receptor phenotypes, the ER-/PR+ is infrequent, and its clinical relevance has been controversially discussed. Thus, we investigated its clinical significance and gene expression pattern in large datasets. In a retrospective clinical study of 15,747 breast cancer patients, we determined the ER/PR subtype survival probabilities using Kaplan-Meier and Cox regression analyses. From The Cancer Genome Atlas (TCGA) breast cancer dataset, PAM50 expression signature and pathway analyses were performed to test for distinct molecular features. In our cohort, the ER-/PR+ phenotype has been observed at a frequency of 4.1 % and was associated with an improved 10-year survival for stage I cancers compared to the ER+/PR+ reference subtype (median; 95 % CI 88.1 %; 83-93 vs. 84.3 %; 82-86 %, P = 0.024) as was confirmed by multivariate analysis over the entire follow-up (HR 0.59, 95 % CI 0.38-0.92, P = 0.021). This association lacked significance when including all stages. ER-/PR+ patients treated with antihormonal agents (34.5 %) had shorter survival compared to their non-treated counterparts (Log-rank P = 0.0001). PAM50 signatures suggest a distinct configuration for the ER-/PR+ phenotype. This specific phenotype has been further separated by a set of 59 uniquely expressed genes. Our study supports the notion of the existence of an ER-/PR+ phenotype with clinical and molecular features distinct from the large group of ER+/PR+ patients.


Subject(s)
Breast Neoplasms/genetics , Breast Neoplasms/mortality , Gene Expression Profiling , Phenotype , Receptors, Estrogen/genetics , Receptors, Progesterone/genetics , Transcriptome , Adolescent , Adult , Aged , Aged, 80 and over , Biomarkers, Tumor , Breast Neoplasms/drug therapy , Breast Neoplasms/pathology , Female , Follow-Up Studies , Humans , Middle Aged , Neoplasm Grading , Neoplasm Metastasis , Neoplasm Staging , Patient Outcome Assessment , Prognosis , Survival Analysis , Young Adult
2.
Pharmacogenomics J ; 15(1): 84-94, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25091503

ABSTRACT

Tamoxifen is the standard-of-care treatment for estrogen receptor-positive premenopausal breast cancer. We examined tamoxifen metabolism via blood metabolite concentrations and germline variations of CYP3A5, CYP2C9, CYP2C19 and CYP2D6 in 587 premenopausal patients (Asians, Middle Eastern Arabs, Caucasian-UK; median age 39 years) and clinical outcome in 306 patients. N-desmethyltamoxifen (DM-Tam)/(Z)-endoxifen and CYP2D6 phenotype significantly correlated across ethnicities (R(2): 53%, P<10(-77)). CYP2C19 and CYP2C9 correlated with norendoxifen and (Z)-4-hydroxytamoxifen concentrations, respectively (P<0.001). DM-Tam was influenced by body mass index (P<0.001). Improved distant relapse-free survival (DRFS) was associated with decreasing DM-Tam/(Z)-endoxifen (P=0.036) and increasing CYP2D6 activity score (hazard ratio (HR)=0.62; 95% confidence interval (CI), 0.43-0.91; P=0.013). Low (<14 nM) compared with high (>35 nM) endoxifen concentrations were associated with shorter DRFS (univariate P=0.03; multivariate HR=1.94; 95% CI, 1.04-4.14; P=0.064). Our data indicate that endoxifen formation in premenopausal women depends on CYP2D6 irrespective of ethnicity. Low endoxifen concentration/formation and decreased CYP2D6 activity predict shorter DRFS.


Subject(s)
Antineoplastic Agents, Hormonal/blood , Breast Neoplasms/blood , Breast Neoplasms/diagnosis , Early Detection of Cancer , Premenopause/blood , Tamoxifen/blood , Adult , Antineoplastic Agents, Hormonal/therapeutic use , Breast Neoplasms/drug therapy , Cohort Studies , Female , Humans , Middle Aged , Predictive Value of Tests , Prospective Studies , Tamoxifen/therapeutic use , Treatment Outcome , Young Adult
3.
Br J Cancer ; 110(4): 1088-100, 2014 Feb 18.
Article in English | MEDLINE | ID: mdl-24548884

ABSTRACT

BACKGROUND: Breast cancer is one of the most common malignancies in women. Genome-wide association studies have identified FGFR2 as a breast cancer susceptibility gene. Common variation in other fibroblast growth factor (FGF) receptors might also modify risk. We tested this hypothesis by studying genotyped single-nucleotide polymorphisms (SNPs) and imputed SNPs in FGFR1, FGFR3, FGFR4 and FGFRL1 in the Breast Cancer Association Consortium. METHODS: Data were combined from 49 studies, including 53 835 cases and 50 156 controls, of which 89 050 (46 450 cases and 42 600 controls) were of European ancestry, 12 893 (6269 cases and 6624 controls) of Asian and 2048 (1116 cases and 932 controls) of African ancestry. Associations with risk of breast cancer, overall and by disease sub-type, were assessed using unconditional logistic regression. RESULTS: Little evidence of association with breast cancer risk was observed for SNPs in the FGF receptor genes. The strongest evidence in European women was for rs743682 in FGFR3; the estimated per-allele odds ratio was 1.05 (95% confidence interval=1.02-1.09, P=0.0020), which is substantially lower than that observed for SNPs in FGFR2. CONCLUSION: Our results suggest that common variants in the other FGF receptors are not associated with risk of breast cancer to the degree observed for FGFR2.


Subject(s)
Breast Neoplasms/genetics , Genetic Predisposition to Disease , Receptor, Fibroblast Growth Factor, Type 2/genetics , Case-Control Studies , Female , Genetic Variation , Genome-Wide Association Study , Genotype , Humans , Polymorphism, Single Nucleotide/genetics , Receptor, Fibroblast Growth Factor, Type 1/genetics , Receptor, Fibroblast Growth Factor, Type 3/genetics , Receptor, Fibroblast Growth Factor, Type 4/genetics , Receptor, Fibroblast Growth Factor, Type 5/genetics
4.
Nat Genet ; 16(1): 68-73, 1997 May.
Article in English | MEDLINE | ID: mdl-9140397

ABSTRACT

Hereditary papillary renal carcinoma (HPRC) is a recently recognized form of inherited kidney cancer characterized by a predisposition to develop multiple, bilateral papillary renal tumours. The pattern of inheritance of HPRC is consistent with autosomal dominant transmission with reduced penetrance. HPRC is histologically and genetically distinct from two other causes of inherited renal carcinoma, von Hippel-Lindau disease (VHL) and the chromosome translocation (3;8). Malignant papillary renal carcinomas are characterized by trisomy of chromosomes 7, 16 and 17, and in men, by loss of the Y chromosome. Inherited and sporadic clear cell renal carcinomas are characterized by inactivation of both copies of the VHL gene by mutation, and/or by hypermethylation. We found that the HPRC gene was located at chromosome 7q31.1-34 in a 27-centimorgan (cM) interval between D7S496 and D7S1837. We identified missense mutations located in the tyrosine kinase domain of the MET gene in the germline of affected members of HPRC families and in a subset of sporadic papillary renal carcinomas. Three mutations in the MET gene are located in codons that are homologous to those in c-kit and RET, proto-oncogenes that are targets of naturally-occurring mutations. The results suggest that missense mutations located in the MET proto-oncogene lead to constitutive activation of the MET protein and papillary renal carcinomas.


Subject(s)
Carcinoma, Papillary/genetics , Kidney Neoplasms/genetics , Mutation , Protein-Tyrosine Kinases/metabolism , Receptor Protein-Tyrosine Kinases/genetics , Adult , Aged , Amino Acid Sequence , Binding Sites , Carcinoma, Papillary/epidemiology , Carcinoma, Renal Cell/epidemiology , Carcinoma, Renal Cell/genetics , Chromosomes, Human, Pair 7 , Female , Genetic Linkage , Germ-Line Mutation , Humans , Kidney Neoplasms/epidemiology , Male , Middle Aged , Molecular Sequence Data , Pedigree , Proto-Oncogene Mas , Proto-Oncogene Proteins c-met , Receptor Protein-Tyrosine Kinases/metabolism , Sequence Homology, Amino Acid
5.
Clin Nephrol ; 71(6): 708-13, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19473641

ABSTRACT

BACKGROUND/AIMS: The genetic basis for clear-cell renal carcinomas has been established in familial and many sporadic forms. Whether the latter can be induced by environmental carcinogens remains controversial, with concern over solvents such as trichloroethylene (TCE). To study this putative relationship, we analyzed the VHL gene from a patient with long-term TCE exposure. METHODS: PCR amplification and sequencing of VHL exons 1 - 3 were performed on peripheral blood and tumor tissue. RESULTS: The tumor alone had a previously undescribed mutation in exon 1 of the VHL gene: deletion of a cytidine residue at position 291 relative to the first ATG start codon of the wild-type sequence. This deletion causes a frameshift and predicts an altered protein sequence from position 98 onwards. CONCLUSION: The affected amino acids are in the functionally important beta-domain of the VHL protein that is implicated in substrate binding for ubiquitylation, and we hypothesize the mutation lowers that affinity. There is loss of suppressor function when substrates such as hypoxia-inducible factor have impaired degradation: they accumulate and ultimately cause uncontrolled cell turnover. This association of a proposed occupational cause and occurrence of renal-cell carcinoma emphasizes the availability and use of VHL sequencing for both studying the pathophysiology of malignant transformation and potentially playing a clinical role in genetic counseling or risk assessment.


Subject(s)
Carcinoma, Renal Cell/genetics , Kidney Neoplasms/genetics , Mutation , Occupational Exposure/adverse effects , Solvents/adverse effects , Trichloroethylene/adverse effects , Carcinoma, Renal Cell/chemically induced , Carcinoma, Renal Cell/diagnosis , Carcinoma, Renal Cell/surgery , Humans , Kidney/pathology , Kidney Neoplasms/chemically induced , Kidney Neoplasms/diagnosis , Kidney Neoplasms/surgery , Male , Middle Aged , Nephrectomy , Tomography, X-Ray Computed , Von Hippel-Lindau Tumor Suppressor Protein/genetics
6.
Water Sci Technol ; 55(12): 307-11, 2007.
Article in English | MEDLINE | ID: mdl-17674864

ABSTRACT

Methyl tert-butylether (MTBE) used as fuel oxygenate poses problems for water suppliers since it is persistent in the aquatic environment and the removal efficiency by conventional water treatment methods (aeration or activated carbon filtration) is rather low. Substitution by other ether compounds such as ethyl tert-butylether (ETBE), tert-amylmethylether (TAME) or di-isopropylether (DIPE) is discussed, however, their environmental behaviour is similar to that of MTBE. Experiments investigating the elimination efficiency of AOP were carried out in tap water and water from Lake Constance. The elimination efficiency for all treatment processes was found to follow the order: MTBE << TAME approximately equal ETBE < DIPE For all compounds under investigation, neither pure ozonation nor UV irradiation yield a considerable concentration decline. Only the formation of highly reactive OH radicals shows a potential for removing the ethers from water. Therefore the addition of H2O2 in equimolar ratio prior to ozone admixing proved to be quite efficient. The application of combined UV/H2O2 showed good results in all cases; the best concentration decline was achieved with UV/ozone. The rate of elimination of the three substitutes for MTBE (ETBE, TAME and DIPE) is higher in all processes; nevertheless, no complete removal could be achieved. Therefore, from the point of view of water suppliers, the use of other ethers as substitute for MTBE is posing the same problems as MTBE.


Subject(s)
Esters/chemistry , Hydrogen Peroxide/chemistry , Oligopeptides/chemistry , Oxygen/chemistry , Ozone/chemistry , Tosylarginine Methyl Ester/chemistry , Water/chemistry , Energy-Generating Resources , Ethyl Ethers/chemistry , Methyl Ethers/chemistry , Minerals/chemistry , Ultraviolet Rays
7.
Water Sci Technol ; 56(11): 151-8, 2007.
Article in English | MEDLINE | ID: mdl-18057653

ABSTRACT

Different homologues of C4 to C8 perfluoroalkyl carboxylates (PFCAs) and perfluoroalkyl sulfonates (PFASs) were detected in German surface waters, bank filtrates, artificially recharged groundwaters, and drinking waters. If no point sources are located nearby, the typically measured levels are in the low ng/L range. In the presence of point sources, such as a fluorochemical production site, a leaching agricultural fertilizer contaminated with PFCAs and PFASs, or drained PFC containing fire-fighting foams, much higher concentrations in the microg/L range occur. This situation is similar in Germany and other countries.


Subject(s)
Alkanesulfonates/analysis , Carboxylic Acids/analysis , Fluorocarbons/analysis , Water Pollutants, Chemical/analysis , Environmental Monitoring , Fresh Water , Germany , Water Supply
8.
J Natl Cancer Inst ; 91(10): 854-61, 1999 May 19.
Article in English | MEDLINE | ID: mdl-10340905

ABSTRACT

BACKGROUND: The development of renal cell carcinoma (RCC) has been associated with both genetic and environmental factors-with mutations in the von Hippel-Lindau (VHL) tumor suppressor gene for clear-cell RCC specifically and with long-term exposure to high doses of trichloroethylene (TRI), an industrially important solvent, for RCC generally. We investigated whether TRI exposure produces RCC through a specific mutational effect on the VHL gene by analyzing VHL sequences in the RCCs of patients exposed to high, cumulative doses of TRI. METHODS: The level of exposure for each of 44 patients with RCC who had known industrial exposure to TRI was classified according to the duration, frequency, and mode of exposure. Samples of normal and cancerous tissues were microdissected from paraffin-embedded tissue. DNA was isolated from these samples, and somatic VHL mutations were identified by polymerase chain reaction analysis, single-strand conformation polymorphism analysis, DNA sequencing, and restriction enzyme digestion. Control samples included RCC DNA from 107 patients without known TRI exposure and lymphocyte DNA from 97 healthy subjects. RESULTS: RCCs of TRI-exposed patients showed somatic VHL mutations in 33 (75%) of 44 cases. The mutations were frequently multiple and accompanied by loss of heterozygosity, and there was an association between the number of mutations and the severity of TRI exposure. We observed a specific mutational hot spot at VHL nucleotide 454 in the RCCs of 13 (39%) of the patients, and this mutation was present in adjacent non-neoplastic kidney parenchyma in four of these patients. The nucleotide 454 mutation was neither detected in any of the RCCs from patients without TRI exposure nor in any of the healthy subjects. CONCLUSION: Our results suggest that RCC in patients with high, cumulative TRI exposure is associated with a unique mutation pattern in the VHL gene.


Subject(s)
Carcinoma, Renal Cell/etiology , Environmental Exposure/adverse effects , Genes, Tumor Suppressor/genetics , Kidney Neoplasms/etiology , Mutation/drug effects , Solvents/adverse effects , Trichloroethylene/adverse effects , von Hippel-Lindau Disease/genetics , Adolescent , Adult , Aged , Aged, 80 and over , Carcinoma, Renal Cell/chemically induced , Carcinoma, Renal Cell/genetics , Case-Control Studies , DNA, Neoplasm/genetics , Female , Humans , Kidney Neoplasms/chemically induced , Kidney Neoplasms/genetics , Loss of Heterozygosity , Male , Middle Aged
9.
J Natl Cancer Inst ; 81(16): 1223-8, 1989 Aug 16.
Article in English | MEDLINE | ID: mdl-2569043

ABSTRACT

In small cell lung carcinoma, one of the short arms of chromosome 3 is typically lost. To investigate chromosome 3 in extrapulmonary small cell carcinoma, we used DNA probes that detect restriction-fragment-length polymorphisms at loci on 3p. These probes were used to study DNA extracted from tumors and normal tissues and/or tumor cell lines from five patients with extrapulmonary small cell cancer. Tumor DNA from four of the five patients with extrapulmonary small cell cancer retained heterozygosity at loci on 3p. Cytogenetic studies of the tumor cell lines established from these four patients showed retention of both short arms of chromosome 3. We conclude that the loss of genetic material from 3p observed in small cell lung cancer is not typical in extrapulmonary small cell cancer.


Subject(s)
Carcinoma, Small Cell/genetics , Chromosome Deletion , Chromosomes, Human, Pair 3 , Adult , Brain Neoplasms/analysis , Brain Neoplasms/genetics , Brain Neoplasms/pathology , Carcinoma, Small Cell/analysis , Carcinoma, Small Cell/pathology , Cell Line , Chromosome Mapping , DNA Probes , DNA, Neoplasm/analysis , Female , Heterozygote , Humans , Karyotyping , Male , Middle Aged , Phenotype , Polymorphism, Restriction Fragment Length , Prostatic Neoplasms/analysis , Prostatic Neoplasms/genetics , Prostatic Neoplasms/pathology , Uterine Neoplasms/analysis , Uterine Neoplasms/genetics , Uterine Neoplasms/pathology
10.
J Natl Cancer Inst ; 81(14): 1097-101, 1989 Jul 19.
Article in English | MEDLINE | ID: mdl-2738940

ABSTRACT

Previous reports showed that the loss of DNA sequences on the short arm of chromosome 3 (3p) is consistently found in sporadic renal cell carcinomas. To evaluate the significance of this genetic change, we looked for the loss of 3p alleles in hereditary renal cell carcinomas and other tumors from patients with von Hippel-Lindau disease. Specific loss of alleles from chromosome 3p was detected with polymorphic DNA markers in 11 renal cell carcinomas, one pheochromocytoma, two spinal hemangioblastomas and one cerebellar hemangioblastoma from von Hippel-Lindau patients. Multiple renal cell carcinomas in individuals with von Hippel-Lindau disease showed loss of the same chromosome 3p alleles, which demonstrated that the same chromosome was deleted in each tumor. Analysis of haplotypes indicated that the loss of chromosome 3p alleles was from the chromosome bearing the balancing, wild-type allele of the VHL gene. These results are consistent with the concept that the VHL gene is a recessive oncogene. Renal cell carcinoma, pheochromocytoma, and spinal and cerebellar hemangioblastomas develop in predisposed family members when somatic mutational events lead to loss of chromosome 3p sequences bearing the wild-type allele of the VHL gene.


Subject(s)
Alleles , Angiomatosis/genetics , Chromosome Deletion , Neoplasms/genetics , von Hippel-Lindau Disease/genetics , Blotting, Southern , Carcinoma, Renal Cell/genetics , Cerebellar Neoplasms/genetics , Disease Susceptibility , Genotype , Haplotypes , Hemangiosarcoma/genetics , Humans , Kidney Neoplasms/genetics , Neoplasms/complications , Polymorphism, Genetic , Spinal Neoplasms/genetics , von Hippel-Lindau Disease/complications
11.
Cancer Res ; 51(4): 1071-7, 1991 Feb 15.
Article in English | MEDLINE | ID: mdl-1671754

ABSTRACT

Renal cell carcinoma has been characterized by an abnormality on the short arm of chromosome 3 which suggests the presence of a tumor suppressor gene at this location. In order to more precisely define the location of the renal cell carcinoma gene and to differentiate molecular changes occurring in early stages of renal neoplasia versus those occurring later in malignant progression, DNA from normal and tumor tissue from 60 patients with various stages of renal cell carcinoma was analyzed for loss of alleles at different chromosomal loci. In tumor tissue from 51 of 58 evaluable patients (88%) there was loss of heterozygosity at one or more of 10 loci tested on chromosome 3 independently of tumor stage. Analysis of the genotypes identified the distal portion of 3p bounded by D3S2 and D3S22 (3p21-26) as the region of the disease gene. In tumor tissue from patients with advanced renal cell carcinoma, we found loss of heterozygosity on chromosome 11p in 5 of 21 (24%), on chromosome 13 in 3 of 9 (33%), and on chromosome 17 in 2 of 19 (11%). We found no loss of heterozygosity at the loci on chromosomes 11, 13, or 17 in tumor tissue from patients with localized renal cell carcinoma (N = 5). These data suggest the existence of a tumor suppressor gene on chromosome 3p which may be essential to the genesis of sporadic renal cell carcinoma and that other tumor suppressor genes are associated with progression of this malignancy.


Subject(s)
Carcinoma, Renal Cell/genetics , Chromosomes, Human, Pair 17 , Kidney Neoplasms/genetics , Adult , Aged , Chromosome Aberrations , Chromosome Deletion , Chromosome Mapping , Chromosomes, Human, Pair 11 , Chromosomes, Human, Pair 13 , Chromosomes, Human, Pair 3 , DNA/isolation & purification , DNA Probes , Densitometry , Female , Genes, Tumor Suppressor , Humans , Kidney Neoplasms/parasitology , Male , Middle Aged , Polymorphism, Restriction Fragment Length
12.
Cancer Res ; 56(13): 2927-30, 1996 Jul 01.
Article in English | MEDLINE | ID: mdl-8674042

ABSTRACT

We analyzed 50 sporadic renal cell carcinomas (RCCs) for loss of heterozygosity (LOH) at the chromosomal regions 1p, 2p, 6p, 7q, 10p, 11p, 13q, 14q, 17p, 21q, and 22q. Histologically, the tumors were distinguished into clear cell, chromophilic, and chromophobe carcinomas. Whereas LOH at 14q was identified in 42-64% of all three tumor types, only the chromophobe tumors showed high frequencies of LOH (73-91%) at 1p, 2p, 6p, 10p, 13q, 17p, and 21q. These findings provide substantial evidence that the chromophobe subtype of RCC represents a distinct genetic entity. Thus, specific LOH patterns may define the histogenesis and oncogenesis of chromophobe RCC and may be useful in tumor diagnosis and clinical prognosis.


Subject(s)
Adenocarcinoma/genetics , Alleles , Carcinoma, Renal Cell/genetics , Chromosomes , Gene Deletion , Kidney Neoplasms/genetics , Adenocarcinoma/pathology , Carcinoma, Renal Cell/pathology , Heterozygote , Humans , Kidney Neoplasms/pathology
13.
Cancer Res ; 60(7): 1942-8, 2000 Apr 01.
Article in English | MEDLINE | ID: mdl-10766184

ABSTRACT

To elucidate the role of somatic alterations for renal cancer etiology and prognosis, we analyzed 227 sporadic renal epithelial tumors for mutations and hypermethylations in the von Hippel-Lindau tumor suppressor gene VHL. Tumors were classified according to the recommendations of the Union Internationale Contre le Cancer (UICC) and the American Joint Committee on Cancer (AJCC). Somatic VHL mutations were identified by PCR, single-strand conformation polymorphism analysis, and sequencing, and hypermethylations were identified by restriction enzyme digestion and Southern blotting. Frequencies of VHL alterations were established, and an association with tumor type or tumor type and tumor stage was evaluated. VHL mutations and hypermethylations were identified in 45% of clear cell renal cell carcinomas (CCRCCs) and occasionally (3 of 28) in papillary (chromophilic) renal cell carcinomas (RCCs). Lack of VHL mutations and hypermethylations in chromophobe RCCs and oncocytomas was statistically significant (P = 0.0001 and P = 0.0004, respectively). RCCs carrying VHL alterations showed, in nine cases (12%), mutations at a hot spot involving a thymine repeat (ATT.TTT) in exon 2. Tumor staging was critical to the VHL mutation/hypermethylation detection rate in CCRCCs shown by separate evaluation of patients from medical centers in Munich, Heidelberg, and Mainz. The spectrum of pT1, pT2, and pT3 CCRCCs and the VHL mutation/hypermethylation detection rate varied among these three groups. Altogether, VHL alterations were significantly associated with pT3 CCRCCs (P = 0.009). This is the first evidence of frequent somatic VHL mutations at a particular site within exon 2 and an association of VHL mutations/hypermethylations with a standard prognostic factor.


Subject(s)
Carcinoma, Renal Cell/genetics , Carcinoma, Renal Cell/pathology , Genes, Tumor Suppressor , Kidney Neoplasms/genetics , Kidney Neoplasms/pathology , Ligases , Mutation , Proteins/genetics , Tumor Suppressor Proteins , Ubiquitin-Protein Ligases , Adenoma, Oxyphilic/genetics , Adenoma, Oxyphilic/pathology , Amino Acid Substitution , Carcinoma, Renal Cell/classification , DNA Methylation , DNA, Neoplasm/genetics , Frameshift Mutation , Gene Expression Regulation, Neoplastic , Humans , Kidney/pathology , Kidney Neoplasms/classification , Neoplasm Staging , Point Mutation , Polymorphism, Single-Stranded Conformational , Sequence Deletion , Von Hippel-Lindau Tumor Suppressor Protein
14.
Oncogene ; 19(48): 5435-43, 2000 Nov 16.
Article in English | MEDLINE | ID: mdl-11114720

ABSTRACT

Hypoxia induces transcription of a range of physiologically important genes including erythropoietin and vascular endothelial growth factor. The transcriptional activation is mediated by the hypoxia-inducible factor-1 (HIF-1), a heterodimeric member of the basic helix-loop-helix PAS family, composed of alpha and beta subunits. HIF-1alpha shares 48 per cent identity with the recently identified HIF-2alpha protein that is also stimulated by hypoxia. In a previous study of hemangioblastomas, the most frequent manifestation of hereditary von Hippel-Lindau disease (VHL), we found elevated levels of vascular endothelial growth factor and HIF-2alpha mRNA in stromal cells of the tumors. Mutations of the VHL tumor suppressor gene are associated with a variety of tumors such as renal clear cell carcinomas (RCC). In this study, we analysed the expression of the hypoxia-inducible factors HIF-1alpha and HIF-2alpha in a range of VHL wildtype and VHL deficient RCC cell lines. In the presence of functional VHL protein, HIF-1alpha mRNA levels are elevated, whereas HIF-2alpha mRNA expression is increased only in cells lacking a functional VHL gene product. On the protein levels, however, in VHL deficient cell lines, both HIF-alpha subunits are constitutively expressed, whereas re-introduction of a functional VHL gene restores the instability of HIF-1alpha and HIF-2alpha proteins under normoxic conditions. Moreover, immunohistochemical analyses of RCCs and hemangioblastomas demonstrate up-regulation of HIF-1alpha and HIF-2alpha in the tumor cells. The data presented here provide evidence for a role of the VHL protein in regulation of angiogenesis and erythropoiesis mediated by the HIF-1alpha and HIF-2alpha proteins.


Subject(s)
Carcinoma, Renal Cell/metabolism , DNA-Binding Proteins/biosynthesis , Genes, Tumor Suppressor/physiology , Kidney Neoplasms/genetics , Ligases , Nuclear Proteins/biosynthesis , Oxygen/metabolism , Proteins/genetics , Trans-Activators/biosynthesis , Transcription Factors , Tumor Suppressor Proteins , Ubiquitin-Protein Ligases , Basic Helix-Loop-Helix Transcription Factors , Carcinoma, Renal Cell/genetics , Cerebellum/metabolism , Cerebellum/physiology , DNA-Binding Proteins/genetics , Endothelial Growth Factors/biosynthesis , Endothelial Growth Factors/genetics , Glucose Transporter Type 1 , Hemangioblastoma/genetics , Hemangioblastoma/metabolism , Humans , Hypoxia-Inducible Factor 1 , Hypoxia-Inducible Factor 1, alpha Subunit , Immunohistochemistry , Kidney Neoplasms/metabolism , Lymphokines/biosynthesis , Lymphokines/genetics , Monosaccharide Transport Proteins/biosynthesis , Monosaccharide Transport Proteins/genetics , Mutation , Nuclear Proteins/genetics , Polymerase Chain Reaction , RNA, Messenger/genetics , RNA, Messenger/metabolism , Trans-Activators/genetics , Tumor Cells, Cultured , Up-Regulation , Vascular Endothelial Growth Factor A , Vascular Endothelial Growth Factors , Von Hippel-Lindau Tumor Suppressor Protein , von Hippel-Lindau Disease/genetics
15.
Oncogene ; 4(4): 451-5, 1989 Apr.
Article in English | MEDLINE | ID: mdl-2566144

ABSTRACT

The c-raf-1 oncogene is located at chromosome 3p25, near a region known to be specifically deleted in patients with renal cell carcinoma and small cell lung carcinoma (SCLC). From cytogenetic analyses of SCLC cell lines, we have estimated that one c-raf-1 allele was deleted in approximately 80% of the cases. However, c-raf-1 was generally thought to be distal to the most common deletion in SCLC, 3p14-23. Using restriction site polymorphisms (RFLPs) located within the c-raf-1 locus, we have examined DNA from 84 human lung carcinomas. In an analysis of 11 paired (normal versus tumor) SCLC DNA samples, all five informative cases showed loss of heterozygosity at this locus in the corresponding tumor sample. Analysis of 73 unpaired lung carcinoma DNAs showed that out of 31 non-SCLC samples, 19% were heterozygous for the BglI polymorphism and 25% showed heterozygosity with TaqI. However, all of the 42 SCLC samples were homozygous for both of these RFLPs. This striking loss of heterozygosity at the c-raf-1 locus in SCLC indicates that one allele of c-raf-1 is deleted in SCLC. The kinase activity of the c-raf protein appears to be constitutively activated in these cells. Whether this apparent activation results from genetic or epigenetic events is under investigation.


Subject(s)
Carcinoma, Small Cell/genetics , Chromosome Mapping , Heterozygote , Lung Neoplasms/genetics , Proto-Oncogenes , DNA/analysis , Humans , Polymorphism, Restriction Fragment Length , Proto-Oncogene Proteins/analysis , Proto-Oncogene Proteins c-raf
16.
Oncogene ; 18(14): 2343-50, 1999 Apr 08.
Article in English | MEDLINE | ID: mdl-10327054

ABSTRACT

Hereditary papillary renal carcinoma (HPRC) is characterized by multiple, bilateral papillary renal carcinomas. Previously, we demonstrated missense mutations in the tyrosine kinase domain of the MET proto-oncogene in HPRC and a subset of sporadic papillary renal carcinomas. In this study, we screened a large panel of sporadic papillary renal carcinomas and various solid tumors for mutations in the MET proto-oncogene. Summarizing these and previous results, mutations of the MET proto-oncogene were detected in 17/129 sporadic papillary renal carcinomas but not in other solid tumors. We detected five novel missense mutations; three of five mutations were located in the ATP-binding region of the tyrosine kinase domain of MET. One novel mutation in MET, V1110I, was located at a codon homologous to an activating mutation in the c-erbB proto-oncogene. These mutations caused constitutive phosphorylation of MET when transfected into NIH3T3 cells. Molecular modeling studies suggest that these activating mutations interfere with the intrasteric mechanism of tyrosine kinase autoinhibition and facilitate transition to the active form of the MET kinase. The low frequency of MET mutations in noninherited papillary renal carcinomas (PRC) suggests that noninherited PRC may develop by a different mechanism than hereditary papillary renal carcinoma.


Subject(s)
Carcinoma, Papillary/genetics , DNA, Neoplasm/genetics , Kidney Neoplasms/genetics , Neoplasm Proteins/genetics , Point Mutation , Proto-Oncogene Proteins c-met/genetics , Proto-Oncogenes , 3T3 Cells/metabolism , Adenoma/genetics , Adenoma/metabolism , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Animals , Binding Sites , Cell Transformation, Neoplastic/genetics , Codon/genetics , DNA Mutational Analysis , Humans , Mice , Models, Molecular , Molecular Sequence Data , Mutagenesis, Site-Directed , Neoplasm Proteins/chemistry , Neoplasm Proteins/metabolism , Neoplastic Syndromes, Hereditary/genetics , Phosphorylation , Protein Conformation , Protein Processing, Post-Translational/genetics , Proto-Oncogene Mas , Proto-Oncogene Proteins c-met/chemistry , Proto-Oncogene Proteins c-met/metabolism , Sequence Alignment , Sequence Homology, Amino Acid , Transfection
17.
Environ Technol ; 26(12): 1371-82, 2005 Dec.
Article in English | MEDLINE | ID: mdl-16372572

ABSTRACT

Equilibrium and kinetic adsorption of methyl tert-butyl ether (MTBE) onto three coal-based activated carbons, one coconut-based activated carbon, and two zeolites are elucidated in this study. Natural organic matter (NOM) and MTBE competed for the adsorption of activated carbons to different extents. The ideal adsorbed solution theory (IAST) combined with the equivalent background compound (EBC) model can adequately describe the NOM competition and predict the isotherms of MTBE onto the activated carbons. No competitive adsorption was observed for one of the zeolites, mordenite, due to the molecular effect. Besides, the aperture size, and the SiO2/Al2O3 ratio of the zeolite may also play an important role in the adsorption of MTBE from the aqueous phase. The surface diffusion model accurately simulated the transport of MTBE within the adsorbents employed in different water matrices. For all the activated carbons tested, the surface diffusivity of MTBE in natural water was nearly equal to that in deionized water, indicating that no apparently hindering effect occurs. A much slower adsorption kinetic of mordenite in natural water was observed since the opening apertures on mordenite may be appreciably hindered and blocked by NOM.


Subject(s)
Adsorption/drug effects , Charcoal/chemistry , Methyl Ethers/chemistry , Organic Chemicals/pharmacology , Water Pollutants, Chemical/pharmacology , Zeolites/chemistry , Aluminum Oxide/chemistry , Aluminum Silicates/chemistry , Kinetics , Silicon Dioxide/chemistry , Time Factors , Water Purification/methods
18.
J Clin Endocrinol Metab ; 82(12): 4101-4, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9398721

ABSTRACT

Pheochromocytoma is a tumor that may occur sporadically or may be a manifestation of a hereditary disease, such as von Hippel-Lindau disease (VHL) and multiple endocrine neoplasia (MEN) type 2. As patients with VHL or MEN type 2 are at risk to develop multiple tumors, they must be distinguished from sporadic cases. We determined the incidence of VHL and MEN type 2 among 62 German patients diagnosed with pheochromocytoma without a history of a hereditary disease. Germline analyses of the vhl gene and exons 10, 11, and 13 of the ret protooncogene were performed by PCR, single strand conformation polymorphism, enzyme digestion, or sequencing. Two patients (3%) showed vhl mutations (95% confidence interval, 1-11%). One patient showed loss of the MspI restriction site at nucleotides 712/713. Another patient had a C/T change at an intronic site that was also detected in 2 of his offspring. No mutations were detected in the ret protooncogene (97.5% confidence interval, 0-6%). In Germany, most sporadic pheochromocytomas are not due to VHL or MEN type 2. Therefore, clinical work-up in patients with pheochromocytoma without signs of hereditary disease is not recommended. However, because the costs of genetic screening are relatively low, and each index case allows optimal care for family members, molecular testing might be cost-effective.


Subject(s)
Adrenal Gland Neoplasms/genetics , Drosophila Proteins , Genes, Tumor Suppressor/genetics , Germ-Line Mutation , Ligases , Pheochromocytoma/genetics , Proteins/genetics , Proto-Oncogene Proteins/genetics , Proto-Oncogenes/genetics , Receptor Protein-Tyrosine Kinases/genetics , Tumor Suppressor Proteins , Ubiquitin-Protein Ligases , Adolescent , Adult , Aged , Germ-Line Mutation/genetics , Humans , Middle Aged , Polymerase Chain Reaction , Polymorphism, Single-Stranded Conformational , Proto-Oncogene Proteins c-ret , Von Hippel-Lindau Tumor Suppressor Protein
19.
Immunobiology ; 165(2): 115-20, 1983 Aug.
Article in English | MEDLINE | ID: mdl-6629410

ABSTRACT

A glycoprotein from human erythrocyte membranes has been found to inhibit lysis of target cells by the attack-phase components C5-C9 from human complement. The inhibiting molecule was purified and identified as glycophorin A. Thus, glycophorin A may have a regulatory function in the lytic complement attack on isologous cells.


Subject(s)
Complement Inactivator Proteins/physiology , Complement System Proteins/metabolism , Glycophorins/physiology , Immune Tolerance , Sialoglycoproteins/physiology , Animals , Chickens , Complement Membrane Attack Complex , Glycophorins/immunology , Glycophorins/isolation & purification , Guinea Pigs , Hemolysis , Humans , MNSs Blood-Group System
20.
Virchows Arch ; 431(1): 17-23, 1997 Jul.
Article in English | MEDLINE | ID: mdl-9247629

ABSTRACT

The prognosis of thymic epithelial tumours depends on malignant behaviour that cannot always be predicted on histological grounds. This study aimed at identifying a molecular marker that would be useful in overcoming the drawbacks of histopathology. Forty-four thymic epithelial tumours were analysed for alterations of the tumour suppressor gene p53 using immunohistochemistry (antibodies D0-1 and CM-1) and PCR-based single-strand conformation polymorphism and DNA sequencing. Histological and clinical evaluation and also p53 analysis revealed three major tumour groups: non-organotypic thymic carcinomas with frequent p53 alterations (7/9) and occurrence of p53 gene mutations (2/9); malignant thymomas with frequent p53 alterations but without p53 gene mutations (11/18); and benign thymomas with rare p53 alterations and without p53 gene mutations (2/17). In non-organotypic thymic carcinomas p53 was detected with both antibodies. In contrast, thymomas lacked immunoreaction with D0-1 suggesting alteration of the antibody-binding site. Overall immunohistochemical results correlated with clinical stages (P < 0.01), pathohistology (P < 0.01), and survival times (P < 0.05). We consider immunohistochemical p53 detection to be a useful new prognostic factor for the evaluation of thymic epithelial tumours.


Subject(s)
Thymoma/chemistry , Thymus Neoplasms/chemistry , Tumor Suppressor Protein p53/analysis , Adult , Base Sequence , Biomarkers, Tumor/analysis , DNA Primers/analysis , DNA Primers/chemistry , DNA Primers/genetics , DNA, Neoplasm/analysis , DNA, Neoplasm/chemistry , DNA, Neoplasm/genetics , Epithelium/pathology , Female , Gene Expression Regulation, Neoplastic , Genes, p53/genetics , Humans , Immunohistochemistry , Male , Middle Aged , Mutation , Polymerase Chain Reaction , Polymorphism, Single-Stranded Conformational , Prognosis , Thymoma/genetics , Thymoma/pathology , Thymus Neoplasms/genetics , Thymus Neoplasms/pathology , Tumor Suppressor Protein p53/genetics
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