Branch architecture in Ginkgo biloba: wood anatomy and long shoot-short shoot interactions.

PREMISE: Ginkgo, centrally placed in seed plant phylogeny, is considered important in many phylogenetic and evolutionary studies. Shoot dimorphism of Ginkgo has been long noted, but no work has yet been done to evaluate the relationships between overall branch architecture and wood ring characters, shoot growth, and environmental conditions. • METHODS: Branches, sampled from similar canopy heights, were mapped with the age of each long shoot segment determined by counting annual leaf-scar series on its short shoots. Transverse sections were made for each long shoot segment and an adjacent short shoot; wood ring thickness, number of rings, and number of tracheids/ring were determined. Using branch maps, we identified wood rings for each long shoot segment to year and developmental context of each year (distal short shoot growth only vs. at least one distal long shoot). Climate data were also analyzed in conjunction with developmental context. • KEY RESULTS: Significantly thicker wood rings occur in years with distal long shoot development. The likelihood that a branch produced long shoots in a given year was lower with higher maximum annual temperature. Annual maximum temperature was negatively correlated with ring thickness in microsporangiate trees only. Annual minimum temperatures were correlated differently with ring thickness of megasporangiate and microsporangiate trees, depending on the developmental context. There were no significant effects associated with precipitation. • CONCLUSIONS: Overall, developmental context alone predicts wood ring thickness about as well as models that include temperature. This suggests that although climatic factors may be strongly correlated with wood ring data among many gymnosperm taxa, at least for Ginkgo, correlations with climate data are primarily due to changes in proportions of shoot developmental types (LS vs. SS) across branches.

Stress-associated developmental reprogramming in moss protonemata by synthetic activation of the common symbiosis pathway.

Symbioses between angiosperms and rhizobia or arbuscular mycorrhizal fungi are controlled through a conserved signaling pathway. Microbe-derived, chitin-based elicitors activate plant cell surface receptors and trigger nuclear calcium oscillations, which are decoded by a calcium/calmodulin-dependent protein kinase (CCaMK) and its target transcription factor interacting protein of DMI3 (IPD3). Genes encoding CCaMK and IPD3 have been lost in multiple non-mycorrhizal plant lineages yet retained among non-mycorrhizal mosses. Here, we demonstrated that the moss Physcomitrium is equipped with a bona fide CCaMK that can functionally complement a Medicago loss-of-function mutant. Conservation of regulatory phosphosites allowed us to generate predicted hyperactive forms of Physcomitrium CCaMK and IPD3. Overexpression of synthetically activated CCaMK or IPD3 in Physcomitrium led to abscisic acid (ABA) accumulation and ectopic development of brood cells, which are asexual propagules that facilitate escape from local abiotic stresses. We therefore propose a functional role for Physcomitrium CCaMK-IPD3 in stress-associated developmental reprogramming.

Patterns of diversity in leaves from canopies of Ginkgo biloba are revealed using Specific Leaf Area as a morphological character.

PREMISE OF THE STUDY: The difference reported in the literature for the Specific Leaf Area (SLA, cm(2)/g) of leaves on short- and long-shoots of Acer rubrum could mean that SLA can serve as a quantitative morphological trait. Our survey of SLA in canopies of Ginkgo biloba sampled a different clade of seed plants to investigate this morphological phenomenon. Such a survey in this dioecious taxon, and one in which a single canopy may have juvenile and reproductive portions, as well as one where canopies bear leaves of several shapes, examine these additional morphological factors as well as any long-shoot short-shoot differences. METHODS: We measured SLA for a set of 642 dried leaves, a sampling across all morphological levels in canopies of large landscape specimens. The tabulated values were analyzed as distributions. KEY RESULTS: Populations of leaves of G. biloba, sorted by morphological features of canopy structure, differ between long- and short-shoots (175%), on the two genders of tree (131%), in the juvenile and reproductive portions of a canopy (183%), and with the presence or absence of seed on short-shoots in the reproductive portion of megasporangiate canopies (114%). Basipetal leaves of long-shoots and leaves of short-shoots have similar values of SLA. CONCLUSIONS: With the exception of the acropetal decrease in SLA along long-shoots, the differences among the several classes of leaf seem to reflect local sink strength, even though the sink itself develops after leaves mature. The large overall range in the values of SLA in Ginkgo underscores the relevance of the details of canopy structure to parsing ecological phenomena.

Differences in the scaling of area and mass of Ginkgo biloba (Ginkgoaceae) leaves and their relevance to the study of specific leaf area.

PREMISE OF THE STUDY: The manner in which the area of the leaf lamina (A) scales with respect to the dry mass of the lamina (M) is an important functional trait that is correlated with whole-plant growth rates and habitat preferences across diverse species. However, the extent to which the scaling between these two variables differs among leaves collected from different types of shoots within the canopy of a tree is poorly understood. Should they exist, significant differences in the A vs. M scaling relationship within canopies would raise a number of important questions, in particular what constitutes an adequate sampling procedure to determine the whole-canopy A vs. M relationship. METHODS: To address this issue, we used a large data set representing 13 biologically distinct categories of leaves sampled from mega- and microsporangiate trees of the dioecious gymnosperm Ginkgo biloba. KEY RESULTS: Analyses of the data for these 13 categories of leaves identify seven statistically significantly different modes of A vs. M scaling that result in significant differences in how specific leaf area (SLA) changes as M varies within the canopies of Ginkgo. CONCLUSIONS: These results indicate that the protocols used to sample leaves for the analysis of foliar functional traits such as specific leaf area need to acknowledge and cope with the effects of leaf and shoot polymorphisms on the quantification of functional traits (and on the construction and testing of hypotheses about these traits).

Reproductive short-shoots of Ginkgo biloba: A quantitative analysis of the disposition of axillary structures.

Ginkgo biloba, the only living representative in an otherwise extinct clade, is of pivotal importance to understanding seed plant phylogeny. Although G. biloba and its fossil relatives have been studied for over two centuries, there are both gaps and contradictions in the information available. We present data documenting the distributions of strobili and consider what an understanding of the disposition of strobili along short-shoots in Ginkgo adds to knowledge of the evolution of reproductive structures in seed plants in general. The megasporangiate strobili are found at and around the boundary between bracts and foliage leaves, while the expanse of microsporangiate strobili centers on the fifth bract back from that boundary. Quantitative analysis of the locations of the strobili along the short-shoot finds that increases in numbers of strobili are the result of recruitment of adjacent axils into morphogenetic activity. Gaps in the series of strobili are exceedingly rare. Further, while increased numbers of megasporangiate strobili arise from the symmetrical addition of axils into the fertile zone, increased numbers of microsporangiate strobili arise from a distinctly asymmetrical, basipetally biased, addition of axillary positions. This accurate morphological framework should orient molecular genetic studies that probe gymnosperm development itself or that consider gymnosperms as the proximate sources of gene expression redeployed in the origin of the angiosperm flower.

Codon usage patterns distort phylogenies from or of DNA sequences.

Papers reporting phylogenetic reconstructions often include discussion of the nature of third position substitutions and have often treated third position data differently from other data. This paper extends such considerations. Plant biotechnologists interested in high levels of expression of foreign proteins have accumulated information on preferences for otherwise synonymous codons. This paper presents a simple analysis for codon bias. Not only is bias frequent, but bias also varies between cohorts of proteins, both by amino acid and by taxon. Analysis of codon usage in the parallel divergence of phytochromes in three model plants finds identical bias for all family members within each taxon and increasingly divergent patterns of bias between increasingly divergent taxa. The molecular constraint of taxon-specific pools of tRNA molecules means individual triplets in a coding sequence are often not independent; algorithms designed to analyze independent characters are inappropriate for such data. Although a misestimate of the number of differences between taxa and groups of taxa can still generate an accurate description of the nesting of clades, other phylogenetic parameters will be strongly affected. Importantly, since codon bias produces smaller-than-expected within-taxon variance (common use of favored triplets) and larger-than-expected between-taxa variance (different favorites in different taxa), statistical support for nodes is certain to be wrong. The translational control of gene expression mediated by codon bias has implications for modern molecular systematics.