Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 62
Filter
Add more filters

Country/Region as subject
Publication year range
1.
Molecules ; 28(13)2023 Jun 29.
Article in English | MEDLINE | ID: mdl-37446752

ABSTRACT

To meet the growing needs of public safety and sustainable development, it is highly desirable to develop flame-retardant polymer materials using a facile and low-cost method. Although conventional solution chemical synthesis has proven to be an efficient way of developing flame retardants, it often requires organic solvents and a complicated separation process. In this review, we summarize the progress made in utilizing simple ball milling (an important type of mechanochemical approach) to fabricate flame retardants and flame-retardant polymer composites. To elaborate, we first present a basic introduction to ball milling, and its crushing, exfoliating, modifying, and reacting actions, as used in the development of high-performance flame retardants. Then, we report the mixing action of ball milling, as used in the preparation of flame-retardant polymer composites, especially in the formation of multifunctional segregated structures. Hopefully, this review will provide a reference for the study of developing flame-retardant polymer materials in a facile and feasible way.


Subject(s)
Flame Retardants , Levonorgestrel , Polymers , Sustainable Development
2.
J Med Internet Res ; 24(3): e27934, 2022 03 01.
Article in English | MEDLINE | ID: mdl-35230244

ABSTRACT

BACKGROUND: Monitoring eating is central to the care of many conditions such as diabetes, eating disorders, heart diseases, and dementia. However, automatic tracking of eating in a free-living environment remains a challenge because of the lack of a mature system and large-scale, reliable training set. OBJECTIVE: This study aims to fill in this gap by an integrative engineering and machine learning effort and conducting a large-scale study in terms of monitoring hours on wearable-based eating detection. METHODS: This prospective, longitudinal, passively collected study, covering 3828 hours of records, was made possible by programming a digital system that streams diary, accelerometer, and gyroscope data from Apple Watches to iPhones and then transfers the data to the cloud. RESULTS: On the basis of this data collection, we developed deep learning models leveraging spatial and time augmentation and inferring eating at an area under the curve (AUC) of 0.825 within 5 minutes in the general population. In addition, the longitudinal follow-up of the study design encouraged us to develop personalized models that detect eating behavior at an AUC of 0.872. When aggregated to individual meals, the AUC is 0.951. We then prospectively collected an independent validation cohort in a different season of the year and validated the robustness of the models (0.941 for meal-level aggregation). CONCLUSIONS: The accuracy of this model and the data streaming platform promises immediate deployment for monitoring eating in applications such as diabetic integrative care.


Subject(s)
Machine Learning , Meals , Area Under Curve , Feeding Behavior , Humans , Prospective Studies
3.
J Environ Manage ; 302(Pt B): 114069, 2022 Jan 15.
Article in English | MEDLINE | ID: mdl-34763191

ABSTRACT

A biofilm-based anaerobic-aerobic (A2O2) reactor was constructed to treat manure-free piggery wastewater. The reactor contained four compartments, among which the first two were anaerobic (A phase) and the last two were aerobic (O phase). Throughout around one-year operation, high-level nutrient removal was demonstrated. At an optimal reflux ratio of 100%, the average NH4+-N, TN, and COD removal efficiencies were high as 99.4%, 91.7%, and 79.4%, respectively, with the influent concentration of 220.6, 231.6 and 332 mg/L, respectively. The NH4+-N, TN, and COD concentrations in the final effluent were only 1.4, 18.5 and 65 mg/L, respectively. COD and nitrogen removal were mainly removed in the A phase and O phase, respectively. This result revolutionizes the previous perception that nitrogen is only removed in the A phase of conventional A-O configuration. Achievement of PN/A in the O phase was critical to the efficient nitrogen removal. Heterotrophic denitrification in the anaerobic compartments removed the nitrate produced by anammox, ensuring the high-level nitrogen removal. Anaerobic organic degradation was a major pathway for COD removal, as abundant methanogens detected in the A phase. This study provides a feasible technical scheme for the efficient nutrient removal from ammonium-rich wastewater.


Subject(s)
Nitrification , Wastewater , Anaerobic Ammonia Oxidation , Bioreactors , Denitrification , Nitrogen , Oxidation-Reduction
4.
J Environ Manage ; 233: 69-75, 2019 Mar 01.
Article in English | MEDLINE | ID: mdl-30557752

ABSTRACT

To understand the ability of an upflow microaerobic biofilm reactor (UMBR) to remove nutrient from manure-free swine wastewater rich in NH4+ with a COD/TN ratio less than 1.00, effect of hydraulic loading rate (HLR) on the microaerobic process was evaluated with a constant reflux ratio of 25 at 25 °C. The results showed that changes in HLR had a remarkable effect on the performance of the UMBR in nutrient removal from the wastewater. With the favorable HLR 3.0 m3/(m3·d) (Hydraulic Retention Time (HRT) 8 h), average removal of COD, NH4+ and TN in the microaerobic process reached 59.3%, 87.7% and 84.7%, respectively, though the COD/TN ratio was as low as 0.84. With an over HLR of 4.0 m3/(m3·d) (HRT decreased to 6 h), bad performance of the UMBR was observed with an average removal of COD, NH4+ and TN as low as 45.0%, 59.0% and 57.5%, respectively. Since the HLR was decreased to 2.4 m3/(m3·d) (HRT 10 h), the microaerobic process regained the efficiency in nutrient removal with a removal of COD, NH4+ and TN averaged 59.0%, 95.3% and 87.8%, respectively. The microaerobic condition allowed anammox bacteria, ammonia-oxidizing bacteria and archaea, nitrite-oxidizing bacteria and denitrifiers to all thrive in the UMBR, resulting in the efficient synchronous removal of organic carbon and nitrogen. As the dominant approach to nitrogen removal, anaerobic ammonium oxidation (anammox) pathway contributing to the TN removal in the microaerobic process exceeded 59.5% at HLR 3.0 m3/(m3·d). The results demonstrated that the UMBR can remove nitrogen and carbon from swine wastewater, with a suitable HLR.


Subject(s)
Ammonium Compounds , Wastewater , Animals , Biofilms , Bioreactors , Nitrogen , Nutrients , Swine , Waste Disposal, Fluid
5.
Pharmazie ; 74(7): 397-405, 2019 07 01.
Article in English | MEDLINE | ID: mdl-31288895

ABSTRACT

The purpose of this study was to develop a new similarity method to assess the drug-drug interaction between midazolam and flucloxacillin. Total quantum statistical moment (TQSM) of pharmacokinetic profiles were expressed by parameters AUCT, MRTT, VRTT et al. Statistical moment similarity (SMS) expressions were deduced to evaluate the similarity of the converted pharmacokinetic profiles. A trial of the pharmacokinetic interaction between midazolam and flucloxacillin by the SMS method was conducted. For midazolam, total quantum SMS (SMST) was 0.9582; total deviation was 0.0525; total variable probability was 4.18 %; total confidence of probability ß was 97.17 % under significance level 0.05; AUC0-∞ were 334.3±334.1 ng•h•mL-1 (after administration of midazolam alone) and 206.9±172.2 ng•h•mL-1 (after co-administration of midazolam and flucloxacillin), respectively. While, for 1'-hydroxy midazolam, SMST was 0.6920; total deviation was 0.3960; total variable probability was 30.80 %; total confidence of probability ß was 94.10 % under significance level 0.05; AUC0-∞ were 1364±810.7 ng•h•mL-1 (after administration of midazolam alone) and 1637±632.6 ng•h•mL-1 (after co-administration of midazolam and flucloxacillin), respectively. These results revealed that flucloxacillin might have weak pharmacokinetic interactions on midazolam metabolized into 1'-hydroxy midazolam, indicating that there was weak induction to CYP3A by flucloxacillin and that there was at least 30.80 % of metabolic behaviour in change with bioavailability decreased by 38.11 % that took effect to flucloxacillin metabolism for liver injury in CPY3A4 poor metabolic polymorphisms. SMS can be an optional method applied to characterize and analyze pharmacokinetic profiles.


Subject(s)
Anti-Bacterial Agents/pharmacology , Floxacillin/pharmacology , Hypnotics and Sedatives/pharmacokinetics , Midazolam/pharmacokinetics , Adult , Anti-Bacterial Agents/administration & dosage , Area Under Curve , Biological Availability , Cytochrome P-450 CYP3A/metabolism , Drug Interactions , Floxacillin/administration & dosage , Humans , Hypnotics and Sedatives/administration & dosage , Male , Midazolam/administration & dosage , Models, Statistical , Young Adult
6.
Zhongguo Zhong Yao Za Zhi ; 44(3): 574-581, 2019 Feb.
Article in Zh | MEDLINE | ID: mdl-30989925

ABSTRACT

The Chinese medicine is mostly derived from plants or animals, highly polymorphic, with dynamic components which are reflected by the characteristic peaks and fingerprint peaks in chromatographic fingerprints. The chromatopharmacokinetics method for determined components is not applicable due to dynamic changes of chromatopharmacokinetics. Based on the preliminary study, dynamic pharmacokinetics mathematical model for multiple components in Chinese medicine was set up and verified by Buyang Huanwu Decoction as the model drug, applying the principle of the total quantum statistical moment(TQSM), superimposing or subtracting the relevant statistical parameters in blood samples and blank samples. This provided a new method for the chromatopharmacokinetic study of Chinese medicine. HPLC was used to determine the TQSM parameters in blood and blank sample fingerprints of Buyang Huanwu Decoction at each point, and the overall TQSM parameters of drug-containing blood sample and blank samples were obtained with addition calculation of TQSM; while the initial TQSM of the pure drug can be obtained with subtraction calculation. The metabolic and absorption equilibrium constants were calculated iteratively to a steady state using the estimated metabolic equilibrium constants, then the metabolic chromatopharmacokinetic parameters in rats were obtained: VUC_T 1.262×10~8 mAu·s, MRT_T 37.48 h, VRT_T 9.016×10~2 h~2, CL_T 25.79 mL·h~(-1)·kg~(-1), Vs 1.586×10~2 mL·kg~(-1), t_(T,0.5) 6.15 h, respectively. This suggested that 95% of the compounds in whole recipe were metabolized and secreted from the body after 0-96.33 h. The experiment verified that the established mathematical model and the total quantum moment statistics parameters can represent the dose-time relationship of Buyang Huanwu Decoction, which can be used to study on in vivo metabolism dynamics for Chinese medicine.


Subject(s)
Drugs, Chinese Herbal/pharmacokinetics , Animals , Chromatography, High Pressure Liquid , Rats
7.
J Environ Manage ; 217: 825-831, 2018 Jul 01.
Article in English | MEDLINE | ID: mdl-29660708

ABSTRACT

This study investigated the role of COD/N ratio on the start-up and performance of an upflow microaerobic sludge reactor (UMSR) treating piggery wastewater at 0.5 mgO2/L. At high COD/N ratio (6.24 and 4.52), results showed that the competition for oxygen between ammonia-oxidizing bacteria, nitrite-oxidizing bacteria and heterotrophic bacteria limited the removal of nitrogen. Nitrogen removal efficiency was below 40% in both scenarios. Decreasing the influent COD/N ratio to 0.88 allowed achieving high removal efficiencies for COD (∼75%) and nitrogen (∼85%) due to the lower oxygen consumption for COD mineralization. Molecular biology techniques showed that nitrogen conversion at a COD/N ratio 0.88 was dominated by the anammox pathway and that Candidatus Brocadia sp. was the most important anammox bacteria in the reactor with a relative abundance of 58.5% among the anammox bacteria. Molecular techniques also showed that Nitrosomonas spp. was the major ammonia-oxidiser bacteria (relative abundance of 86.3%) and that denitrification via NO3- and NO2- also contributed to remove nitrogen from the system.


Subject(s)
Bioreactors , Wastewater , Denitrification , Nitrogen , Sewage , Waste Disposal, Fluid
8.
Urol Int ; 106(3): 321-322, 2022.
Article in English | MEDLINE | ID: mdl-34965535
9.
Zhongguo Zhong Yao Za Zhi ; 41(10): 1849-1854, 2016 May.
Article in Zh | MEDLINE | ID: mdl-28895331

ABSTRACT

To investigate the effect of the ingredient group of traditional Chinese medicine (TCM) with different "imprinted template" on the supramolecular solubilization ability of licorice, in order to lay a theoretical foundation for explaining the solubilization phenomenon of the components of TCM. Based on the independent supramolecular "imprinted template" rules, molecular connectivity index (MCI) and the correlation of n-octanol-water partition coefficient (logP) were used to indicate hydrophilic lipophilic capacity of TCM, and the extractum rate was used to indicate the solubilization effect of licoriceon single TCM herbs or compounds. The solubilization ability of licorice was evaluated based on MCI, logP and the extractum rate. According to the results, the correlation coefficient between MCI and logP for single herbs was 0.942, and that for single herb adding licorice was 0.916. The extractum rate of most herbs was increased after adding licorice. The correlation coefficient among the extractum rate as well as MCI and logP change values before and after adding licorice were respectively 0.837, 0.405. The correlation coefficient between MCI and logP for eight compounds was 0.937. Meanwhile, licorice had a solubilization effect on the remaining 7 compound except for Huangqi decoction. Therefore, licorice shows the solubilization effect through the independent supramolecular "imprinted template", so as to improve the hydrophilic lipophilic ability. There was a high positive correlation between the MCI and logP in ingredients for TCM, which could be used as important parameters to indicate the "imprinted template" feature for components of TCM. The study on the solubilizing effect of TCM with the supramolecular "imprinted template" theory was feasible, and will lay a foundation for the reform of single-herb dosage form.


Subject(s)
Drugs, Chinese Herbal/chemistry , Glycyrrhiza/chemistry , 1-Octanol , Medicine, Chinese Traditional , Solubility
10.
Zhongguo Zhong Yao Za Zhi ; 41(2): 345-349, 2016 Jan.
Article in Zh | MEDLINE | ID: mdl-28861984

ABSTRACT

The (anaphylactoid) hypersensibility mechanism of ″imprinting templates″ characteristics of traditional Chinese medicine (TCM) injection supramolecules was clarified to lay the foundation to build safety evaluation method. Based on the previous publication on special impact of Chinese medicine theories on supramolcular chemistry, combined with the natural origination of (anaphylactoid) hypersensitized special rules as well as the sensitization phenomenon of cordate houttuynia injection, the impact of the structure characteristics of ″imprinting templates″ in TCM injection supramolecules on its (anaphylactoid) hypersensibility was clarified. In Chinese medicine injections, the supramolecular structures can independently be generated, showing overall apparent (anaphylactoid) hypersensibility nature, and their structure characteristics were dependent on the strength. In addition, (anaphylactoid) hypersensitive critical supramolecular structure was present. When it was administrated by ″injection″, it's structure was not easy to be destroyed, often showing apparent immunogenicity, whereas if it was administrated by ″oral″, the structure would be destroyed by the gastrointestinal tract, showing weaker or no apparent immunogenicity. Therefore, there are differences in (anaphylactoid) hypersensibility between ″injection″ and ″oral″ administration of TCM. TCM injections would produce the supramolecules between ″molecular society″ by independent reaction of supramolecular ″imprinting template″ (chemical determinants), showing apparent immune process of recognition, copying, and storage. Single molecule is a special example for this. The screening of anaphylactoid (sensitinogen) includes the single ingredients and their forming supramolecules for TCM injection. This is the unique feature for safety evaluation of Chinese medicine injection.


Subject(s)
Drug Hypersensitivity/etiology , Drugs, Chinese Herbal/adverse effects , Drugs, Chinese Herbal/chemical synthesis , Drug Hypersensitivity/immunology , Drugs, Chinese Herbal/administration & dosage , Humans , Injections , Medicine, Chinese Traditional , Molecular Imprinting
11.
Zhongguo Zhong Yao Za Zhi ; 41(6): 1152-1160, 2016 Mar.
Article in Zh | MEDLINE | ID: mdl-28875686

ABSTRACT

More and more disputes have happened to confront us continuously since the separation of Japanese(wild) honeysuckle flower in Chinese Pharmacopoeia in 2005. The state pharmacopeia committee decided to separate Japanese(wild) honeysuckle flower into two species for japanese(wild) honeysuckle flower, but didn't define their the convincing reasons still did not provide to us as a result that two medicines are not described the differences in natural properties, efficiency and indication, usage and dosage, as well as not given a resolving methodand specific solution. It was known for us that in the history of traditional Chinese medicine(TCM), the phenomenenphenomena of the "one drug from multi-species" and "one species for multi-drug" are very ordinary thingswere ubiquitous. Whether separation of the drug species are separated shall be decided to by clinical efficiency. Through Chinese pharmacopoeia (2015 edition) issue of Chinese Pharmacopoeia the 2015 issue of the Chinese Pharmacopoeia, we still cannot find a scientific solution for the dispute of for Japanese (wild) honeysuckle flower, perhaps because of insufficient reorganization of TCM clinical medication regularities, such as "treatment of different diseases with same drug", " treatment of the same disease with different drugs" and "treatment of the same syndrome with multi-prescriptions", and "one prescription treating multiple syndromes"; lack of in-depth analysis for multi-component TCM compounds and autonomisation of "supermolecular template" for organs and meridians; less attention to the advance of efficacy and safety evaluation technologies for multi-component TCM compounds; impacts from the medication mode of "one ingredient-one composition-one effect"; as well as insufficient research methods for bioequivalent evaluation in preclinic and clinic studies . The dispute for species combination or separation for Japanese(wild) honeysuckle flower was apparently caused by regional economy, drug biological equivalent of efficacy and safety, but arising from clinical principles for systematical syndrome treatment with TCM, or concepts in the treatment of diseases with TCM or western medicines. This paper focused on current studies on Japanese(wild) honeysuckle flower in the combination with TCM clinical medication regularities, such as "treatment of different diseases with same drug", "treatment of the same disease with different drugs" and "treatment of the same syndrome with multi-prescriptions", and "one prescription treating multiple syndromes", expounded the specific pharmacological regularity of "heterogeneous equivalence" of Japanese (wild) honeysuckle flower, and put forward methods for studying bioequivalence of Japanese(wild) honeysuckle flower, in order to solve the combination and separation of Japanese(wild) honeysuckle flower and lay a foundation for promoting the development of Chinese herbal medicine industry.


Subject(s)
Drugs, Chinese Herbal/chemistry , Lonicera/chemistry , Flowers/chemistry , Humans , Molecular Imprinting , Molecular Structure , Prescriptions
12.
Zhongguo Zhong Yao Za Zhi ; 40(21): 4313-8, 2015 Nov.
Article in Zh | MEDLINE | ID: mdl-27071277

ABSTRACT

The paper, based on the previous publication as special impact of Chinese medicine theories on supramolcular chemistry, aims to analyze the natural origination for the Chinese medicine and to explain the special impact of "Qi chromatography" reaction on "imprinting templates" in supramolcular host of human being with Chinese medicine, in order to reveal the CM's properties of "medical element" with "imprinting templates" autonomisation generally took place in natural supramolecules, and also to discover that the CM's pharmacology are satisfied with its own approaches different form western pharmacology. It was decided, for CM's pharmacology guided by CM's theories, to "Qi chromatography" relations between the CM's ingredient groups and the meridian zang-fu viscera. The supramolcular chemistry played an all-through role in procession of making macro-regularities and special presentation on behavior of "Qi chromatography" impulse owning to the matching action of all kinds of ingredients on the meridian zang-fu viscera with similar "imprinting templates". The CM's pharmacology were guided by CM's theories, owing to its interpretation of supramolecular chemistry. The pharmacology was achieved to construct up completely on base of classical chemical single molecular bonds whereas the CM's pharmacology be configured to big building by way of "imprinting templates" as multi-weak bonds among "supramolecular society". CM's pharmacology was supramolcular pharmacology dealt with "molecular society" on the base of western pharmacology, and employed to double research approaches both math-physical quantitative representation on macroscope and qualitative analyses in microscope.


Subject(s)
Drugs, Chinese Herbal/chemistry , Molecular Imprinting , Animals , Drugs, Chinese Herbal/pharmacology , Humans , Meridians , Qi
13.
Zhongguo Zhong Yao Za Zhi ; 40(8): 1624-9, 2015 Apr.
Article in Zh | MEDLINE | ID: mdl-26281611

ABSTRACT

In this paper, based on the special influence of supramolecular chemistry on the basic theory of Chinese medicines ( CM) , the authors further analyzed the history of meridian tropism and natural origins of CM organisms and explained CM ingredients and the universal regularity of the automatic action of the supramolecular "imprinting templates" hole channel structure. After entering human bodies, CMs, as the aggregation of supramolecular "imprinting templates" , automatically seek supramolecular subjects that are matched with their "imprinting templates" in human meridians and organs for the purpose of self-recognition, self-organization, self-assembly and self-replication, so as to generate specific efficacy in meridians and organs, which is reflected as the meridian tropism phenomena at macro level. This regularity can be studied by in vitro and in vivo experimental studies. In vitro methods are mostly supra molecular structure analysis and kinetic and thermodynamic parameter calculation; Whereas in vivo methods are dominated by the analysis on object component distribution, chromatopharmacodynamic parameters and network chromatopharmacodynamic parameters; Particularly, the acupoint-medicine method can simplify to study the supramolecular subject-object relations. Consequently, CM's'meridian tropism reveals the universal regularity for interactions of macromolecular and micromolecular "imprinting templates" of subjects and objects in natural organisms. As the first barrier for the material base of the CM theory and breakthrough in the modernization of the basic CM theory, meridian tropism plays an important role in studies on basic theories of the basic CM theory.


Subject(s)
Drugs, Chinese Herbal/chemistry , Meridians , Acupuncture Points , Drug Therapy , Humans , Medicine, Chinese Traditional
14.
Zhongguo Zhong Yao Za Zhi ; 39(8): 1534-43, 2014 Apr.
Article in Zh | MEDLINE | ID: mdl-25039196

ABSTRACT

The paper aimed to elucidate the specific impact of supramolecular chemistry on the Chinese medicine theories (CMT) in their modernization, after had summarized up the research status of supramolecular chemistry and analyzed the possible supramolecular forms of Chinese medicine (CM), as well as considered the problems in modernization of CM theories. On comparison of the classical chemistry that delt with chemical bonds among atoms, the supramolecular chemistry was rather concerned with varietes of weak noncovalent bonds intermolecules, and reflected the macro-apparent chemical properties of each molecules, and was the most appropriate chemical theories to explain the CMT and microcosmic materials. The molecules in the human body and Chinese material medica (CMM) formed supramolecules by way of self-assembly, self-organization, self-recognition and self-replication, with themselves or with complexation, composition, chelation, inclusion, neutralization etc. Meridian and Zang-fu viscera in CMT might be a space channel structure continuously consisted of unique molecules cavity that was imprinted with the supramolecularly template inside and outside of cells, through which the molecules in CMM interacted with the meridian and Zang-fu viscera. When small molecules in human body imprinted with macromolecules in meridian and Zang-fu viscera, in other words, they migrated along within imprinting channels of meridian and Zang-fu viscera on behavior of "Qi chromatography" impulsed by the heart beat, finally showed up on macroscopic the anisotropy of tissue and organ, as described namely as visceral manifestation in Chinese medical science. When small molecules in CMM interacted with imprinting channel on meridian and Zang-fu viscera, the natural properties and efficacy regularities of CMM was reflected on macroscopic. Therefore, the special representation forms of basic CMT is based on the macroscopic expression of "Qi chromatography" abided by imprinting effect regularities, and on whether the imprinted template of small molecules matched with cavity template of macromolecules in meridian and Zang-fu viscera, only is the adequate representation of supramolecular chemistry for them. The CMM materials is the mixture including single molecules and supramolecules. The compatibility for CM prescriptions can significantly change the function rules. Therefore in the study of basic CMT, we should pay special attention to the laws of supramolecular chemistry. It is the most essential differences of the CMT from the modern medicine which established by the laws of single molecular theories.


Subject(s)
Chemistry, Pharmaceutical , Drugs, Chinese Herbal/chemistry , Drug Therapy , Drugs, Chinese Herbal/pharmacology , Humans , Meridians , Nanotechnology
15.
Bioinform Adv ; 4(1): vbae054, 2024.
Article in English | MEDLINE | ID: mdl-38645719

ABSTRACT

Motivation: Annotating cell types is a challenging yet essential task in analyzing single-cell RNA sequencing data. However, due to the lack of a gold standard, it is difficult to evaluate the algorithms fairly and an overfitting algorithm may be favored in benchmarks. To address this challenge, we developed a deep learning-based single-cell type prediction tool that assigns the cell type to 265 different cell types for humans, based on data from approximately five million cells. Results: We achieved a median area under the ROC curve (AUC) of 0.93 when evaluated across datasets. We found that inconsistent labeling in the existing database generated by different labs contributed to the mistakes of the model. Therefore, we used cell ontology to correct the annotations and retrained the model, which resulted in 0.971 median AUC. Our study reveals a limiting factor of the accuracy one may achieve with the current database annotation and points to the solutions towards an algorithm-based correction of the gold standard for future automated cell annotation approaches. Availability and implementation: The code is available at: https://github.com/SherrySDong/Hierarchical-Correction-Improves-Automated-Single-cell-Type-Annotation. Data used in this study are listed in Supplementary Table S1 and are retrievable at the CZI database.

16.
Adv Sci (Weinh) ; 11(15): e2305626, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38350735

ABSTRACT

Modeling neuron responses to stimuli can shed light on next-generation technologies such as brain-chip interfaces. Furthermore, high-performing models can serve to help formulate hypotheses and reveal the mechanisms underlying neural responses. Here the state-of-the-art computational model is presented for predicting single neuron responses to natural stimuli in the primary visual cortex (V1) of mice. The algorithm incorporates object positions and assembles multiple models with different train-validation data, resulting in a 15%-30% improvement over the existing models in cross-subject predictions and ranking first in the SENSORIUM 2022 Challenge, which benchmarks methods for neuron-specific prediction based on thousands of images. Importantly, The model reveals evidence that the spatial organizations of V1 are conserved across mice. This model will serve as an important noninvasive tool for understanding and utilizing the response patterns of primary visual cortex neurons.


Subject(s)
Deep Learning , Visual Cortex , Mice , Animals , Visual Perception/physiology , Primary Visual Cortex , Visual Cortex/physiology , Neurons/physiology
17.
Animal Model Exp Med ; 2024 Mar 13.
Article in English | MEDLINE | ID: mdl-38477441

ABSTRACT

BACKGROUND: Medulloblastoma (MB) is one of the most common malignant brain tumors that mainly affect children. Various approaches have been used to model MB to facilitate investigating tumorigenesis. This study aims to compare the recapitulation of MB between subcutaneous patient-derived xenograft (sPDX), intracranial patient-derived xenograft (iPDX), and genetically engineered mouse models (GEMM) at the single-cell level. METHODS: We obtained primary human sonic hedgehog (SHH) and group 3 (G3) MB samples from six patients. For each patient specimen, we developed two sPDX and iPDX models, respectively. Three Patch+/- GEMM models were also included for sequencing. Single-cell RNA sequencing was performed to compare gene expression profiles, cellular composition, and functional pathway enrichment. Bulk RNA-seq deconvolution was performed to compare cellular composition across models and human samples. RESULTS: Our results showed that the sPDX tumor model demonstrated the highest correlation to the overall transcriptomic profiles of primary human tumors at the single-cell level within the SHH and G3 subgroups, followed by the GEMM model and iPDX. The GEMM tumor model was able to recapitulate all subpopulations of tumor microenvironment (TME) cells that can be clustered in human SHH tumors, including a higher proportion of tumor-associated astrocytes and immune cells, and an additional cluster of vascular endothelia when compared to human SHH tumors. CONCLUSIONS: This study was the first to compare experimental models for MB at the single-cell level, providing value insights into model selection for different research purposes. sPDX and iPDX are suitable for drug testing and personalized therapy screenings, whereas GEMM models are valuable for investigating the interaction between tumor and TME cells.

18.
Yao Xue Xue Bao ; 48(9): 1453-8, 2013 Sep.
Article in Zh | MEDLINE | ID: mdl-24358780

ABSTRACT

The paper aims to elucidate and establish a new mathematic model: the total quantum statistical moment standard similarity (TQSMSS) on the base of the original total quantum statistical moment model and to illustrate the application of the model to medical theoretical research. The model was established combined with the statistical moment principle and the normal distribution probability density function properties, then validated and illustrated by the pharmacokinetics of three ingredients in Buyanghuanwu decoction and of three data analytical method for them, and by analysis of chromatographic fingerprint for various extracts with different solubility parameter solvents dissolving the Buyanghanwu-decoction extract. The established model consists of four mainly parameters: (1) total quantum statistical moment similarity as ST, an overlapped area by two normal distribution probability density curves in conversion of the two TQSM parameters; (2) total variability as DT, a confidence limit of standard normal accumulation probability which is equal to the absolute difference value between the two normal accumulation probabilities within integration of their curve nodical; (3) total variable probability as 1-Ss, standard normal distribution probability within interval of D(T); (4) total variable probability (1-beta)alpha and (5) stable confident probability beta(1-alpha): the correct probability to make positive and negative conclusions under confident coefficient alpha. With the model, we had analyzed the TQSMS similarities of pharmacokinetics of three ingredients in Buyanghuanwu decoction and of three data analytical methods for them were at range of 0.3852-0.9875 that illuminated different pharmacokinetic behaviors of each other; and the TQSMS similarities (ST) of chromatographic fingerprint for various extracts with different solubility parameter solvents dissolving Buyanghuanwu-decoction-extract were at range of 0.6842-0.999 2 that showed different constituents with various solvent extracts. The TQSMSS can characterize the sample similarity, by which we can quantitate the correct probability with the test of power under to make positive and negative conclusions no matter the samples come from same population under confident coefficient a or not, by which we can realize an analysis at both macroscopic and microcosmic levels, as an important similar analytical method for medical theoretical research.


Subject(s)
Drugs, Chinese Herbal/chemistry , Models, Statistical , Plants, Medicinal/chemistry , Chromatography, High Pressure Liquid , Drug Combinations , Drugs, Chinese Herbal/isolation & purification , Solubility
19.
Zhongguo Zhong Yao Za Zhi ; 38(10): 1643-8, 2013 May.
Article in Zh | MEDLINE | ID: mdl-23947155

ABSTRACT

OBJECTIVE: To analyze the status of reaching meridian research for the Chinese Matria Medica and to raise point-medicine method. METHOD: To review and analyze the studied situation of the corresponding relationships between "materials", as the constituents in the Chinese materia medica (CMM) as reaching meridian material foundation, and "image", as the function states of the zang-fu viscera, to investigate the problems and the measures to solve it. RESULT: There are imprinting relationships among "materials", as the constituents alike metabolic pathway in the CMM as reaching meridian material foundation, and "image", as the function of the zang-fu viscera related with meridians, and "symptom", the states of them, retroacted, represented and explored by the corresponding meridianed constituents in the CMM as quantitative pharmacologic parameters,also modified by special acupuncture points, finally to establish the new method of reaching meridian according to meridian point-medicine action and also to investigate the relations between the constituents in the CMM and network targets of disease as to kill two birds with one arrow. CONCLUSION: There are imprinting relationships among "materials", "image", "symptom" versus CMM, zang-fu viscera function related with meridians, their function status respectively, which are modified by acupuncture merisian points. The point-medicine method for assuring reaching meridian is the most simple way to investigate reaching meridian for CMM, is also a important way to investigate visceral and meridianal manifestations.


Subject(s)
Acupuncture Points , Materia Medica/chemistry , Meridians , Phytotherapy , China , Drugs, Chinese Herbal/history , Drugs, Chinese Herbal/therapeutic use , History, Ancient , Humans , Materia Medica/history , Phytotherapy/history
20.
Zhongguo Zhong Yao Za Zhi ; 38(8): 1266-70, 2013 Apr.
Article in Zh | MEDLINE | ID: mdl-23944049

ABSTRACT

OBJECTIVE: To investigate the influence of molecular imprinting phenomena of traditional Chinese medicines (TCMs) on basic theories of TCMs according to current situations of molecular imprinting technology and experimental studies. METHOD: Fundamental principles of molecular imprinting theory were followed to analyze the material basis for TCM molecules to generate the imprinting phenomena, in order to find other material basis with more direct efficacy in line with the requirements of basic theories and modernization of TCMs. RESULT: Compared with single-component structures, TCMs and their compound components could create super-molecular compounds through complexation, composition, chelation, inclusion, neutralization, self-assembly and chemical reaction. The material basis of TCMs was super-molecular compounds including single ingredients, and there was an inter-molecule imprinting phenomenon. Therefore, special attention should be paid to inter-super-molecule imprinting actions in studies on TCM property, quality control, processing, drug preparation and pharmacology. The compatibility of TCM compounds could significantly change the action. CONCLUSION: The material basis of TCMs is super-molecular compounds based on single molecular groups. Super-molecules and molecular groups act rules, which is another difference between TCM compounds and single molecular drugs.


Subject(s)
Drugs, Chinese Herbal/chemistry , Medicine, Chinese Traditional , Molecular Imprinting , Humans
SELECTION OF CITATIONS
SEARCH DETAIL