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1.
J Exp Bot ; 75(13): 3891-3902, 2024 Jul 10.
Article in English | MEDLINE | ID: mdl-38486360

ABSTRACT

Self-incompatibility (SI) is a crucial mechanism that prevents self-fertilization and inbreeding in flowering plants. Citrus exhibits SI regulated by a polymorphic S-locus containing an S-RNase gene and multiple S-locus F-box (SLF) genes. It has been documented that S-RNase functions as the pistil S determinant, but there is no direct evidence that the SLF genes closely linked with S-RNase function as pollen S determinants in Citrus. This study assembled the genomes of two pummelo (Citrus grandis) plants, obtained three novel complete and well-annotated S-haplotypes, and isolated 36 SLF or SLF-like alleles on the S-loci. Phylogenetic analysis of 138 SLFs revealed that the SLF genes were classified into 12 types, including six types with divergent or missing alleles. Furthermore, transformation experiments verified that the conserved S6-SLF7a protein can lead to the transition of SI to self-compatibility by recognizing non-self S8-RNase in 'Mini-Citrus' plants (S7S8 and S8S29, Fortunella hindsii), a model plant for citrus gene function studies. In vitro assays demonstrated interactions between SLFs of different S haplotypes and the Skp1-Cullin1-F-box subunit CgSSK1 protein. This study provides direct evidence that SLF controls the pollen function in Citrus, demonstrating its role in the 'non-self recognition' SI system.


Subject(s)
Citrus , F-Box Proteins , Phylogeny , Plant Proteins , Pollen , Ribonucleases , Self-Incompatibility in Flowering Plants , Citrus/genetics , Citrus/physiology , Citrus/metabolism , Self-Incompatibility in Flowering Plants/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Pollen/genetics , Pollen/physiology , F-Box Proteins/genetics , F-Box Proteins/metabolism , Ribonucleases/metabolism , Ribonucleases/genetics , Amino Acid Sequence
2.
Plant Physiol ; 190(4): 2519-2538, 2022 11 28.
Article in English | MEDLINE | ID: mdl-36135821

ABSTRACT

Polyploidization leads to novel phenotypes and is a major force in evolution. However, the relationship between the evolution of new traits and variations in the post-translational modifications (PTM) of proteins during polyploidization has not been studied. Acetylation of lysine residues is a common protein PTM that plays a critical regulatory role in central metabolism. To test whether changes in metabolism in citrus fruit is associated with the reprogramming of lysine acetylation (Kac) in non-histone proteins during allotetraploidization, we performed a global acetylome analysis of fruits from a synthetic allotetraploid citrus and its diploid parents. A total of 4,175 Kac sites were identified on 1,640 proteins involved in a wide range of fruit traits. In the allotetraploid, parental dominance (i.e. resemblance to one of the two parents) in specific fruit traits, such as fruit acidity and flavonol metabolism, was highly associated with parental Kac level dominance in pertinent enzymes. This association is due to Kac-mediated regulation of enzyme activity. Moreover, protein Kac probably contributes to the discordance between the transcriptomic and proteomic variations during allotetraploidization. The acetylome reprogramming can be partially explained by the expression pattern of several lysine deacetylases (KDACs). Overexpression of silent information regulator 2 (CgSRT2) and histone deacetylase 8 (CgHDA8) diverted metabolic flux from primary metabolism to secondary metabolism and partially restored a metabolic status to the allotetraploid, which expressed attenuated levels of CgSRT2 and CgHDA8. Additionally, KDAC inhibitor treatment greatly altered metabolism in citrus fruit. Collectively, these findings reveal the important role of acetylome reprogramming in trait evolution during polyploidization.


Subject(s)
Citrus , Proteomics , Lysine/metabolism , Proteome/genetics , Proteome/metabolism , Fruit/metabolism , Citrus/genetics , Citrus/metabolism , Acetylation , Protein Processing, Post-Translational
3.
Plant Physiol ; 183(4): 1681-1695, 2020 08.
Article in English | MEDLINE | ID: mdl-32513835

ABSTRACT

MicroRNA399 (miR399) regulates phosphate homeostasis in plants by down-regulating the expression of PHOSPHATE2 (PHO2, or UBC24 encoding the ubiquitin-conjugating E2 enzyme). We previously identified CsmiR399a.1 in a small RNA sequencing screen of a male-sterile somatic cytoplasmic hybrid (or cybrid) of pummelo (Citrus grandis). Here, we report that miR399 affects reproductive development and male fertility in citrus. Down-regulation of CsmiR399a.1 using a short tandem target mimic (STTM) led to abnormal floral development, inhibition of anther dehiscence, and decreased pollen fertility. When grown in inorganic phosphate (Pi)-sufficient conditions, CsmiR399a.1-STTM plants had lower total phosphorus content in their leaves than the wild type and showed typical symptoms of Pi deficiency. In CsmiR399a.1-STTM plants, the expression of genes involved in starch metabolism and Pi homeostasis was significantly different than in the wild type. Thus, we conclude that miR399-STTM mimicked Pi deficiency, disturbed starch metabolism, and was responsible for pollen grain collapse in the transgenic lines. We identified CsUBC24, a citrus homolog of Arabidopsis (Arabidopsis thaliana) AtUBC24 (PHO2), as a target of CsmiR399a.1 that physically interacts with the floral development regulators SEPALLATA family (CsSEP1.1, CsSEP1.2, and CsSEP3) and the anther dehiscence regulator INDUCER OF CBF EXPRESSION1 (CsICE1). We hypothesize that CsUBC24 downregulates the CsSEPs, which disrupts the floral meristem identity regulatory network and leads to developmental abnormalities in flowers. By interacting with CsICE1, CsUBC24 disturbs stomate function on the anther surface, which inhibits anther dehiscence. These findings indicate that a miR399-based mechanism influences both reproductive development and male fertility in citrus.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Arabidopsis/physiology , Citrus/metabolism , Citrus/physiology , Flowers/metabolism , Flowers/physiology , Plant Leaves/metabolism , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Citrus/genetics , Flowers/genetics , Gene Expression Regulation, Plant , Plant Infertility/genetics , Plant Infertility/physiology , Plant Leaves/genetics , Plant Leaves/physiology , Ubiquitin-Conjugating Enzymes/genetics , Ubiquitin-Conjugating Enzymes/metabolism
4.
J Exp Bot ; 67(19): 5743-5756, 2016 10.
Article in English | MEDLINE | ID: mdl-27619233

ABSTRACT

Nucellar embryony (NE) is an adventitious form of apomixis common in citrus, wherein asexual embryos initiate directly from nucellar cells surrounding the embryo sac. NE enables the fixation of desirable agronomic traits and the production of clonal offspring of virus-free rootstock, but impedes progress in hybrid breeding. In spite of the great importance of NE in citrus breeding and commercial production, little is understood about the underlying molecular mechanisms. In this study, the stages of nucellar embryo initiation (NEI) were determined for two polyembryonic citrus cultivars via histological observation. To explore the genes and regulatory pathways involved in NEI, we performed mRNA-seq and sRNA-seq analyses of ovules immediately prior to and at stages during NEI in the two pairs of cultivars. A total of 305 differentially expressed genes (DEGs) were identified between the poly- and monoembryonic ovules. Gene ontology (GO) analysis revealed that several processes are significantly enriched based on DEGs. In particular, response to stress, and especially response to oxidative stress, was over-represented in polyembryonic ovules. Nearly 150 miRNAs, comprising ~90 conserved and ~60 novel miRNAs, were identified in the ovules of either cultivar pair. Only two differentially expressed miRNAs (DEMs) were identified, of which the novel miRN23-5p was repressed whereas the targets accumulated in the polyembryonic ovules. This integrated study on the transcriptional and post-transcriptional regulatory profiles between poly- and monoembryonic citrus ovules provides new insights into the mechanism of NE, which should contribute to revealing the regulatory mechanisms of plant apomixis.


Subject(s)
Apomixis/genetics , Citrus/genetics , MicroRNAs/genetics , RNA, Messenger/genetics , Transcriptome/genetics , Citrus/growth & development , Gene Expression Regulation, Developmental/genetics , Gene Expression Regulation, Developmental/physiology , Gene Expression Regulation, Plant/genetics , Gene Expression Regulation, Plant/physiology , MicroRNAs/physiology , Ovule/genetics , Ovule/physiology , Oxidative Stress , RNA, Messenger/physiology , Real-Time Polymerase Chain Reaction , Seeds/genetics , Seeds/physiology , Sequence Analysis, RNA
5.
J Proteome Res ; 13(6): 2998-3015, 2014 Jun 06.
Article in English | MEDLINE | ID: mdl-24824475

ABSTRACT

Comprehensive and quantitative proteomic information on citrus floral bud is significant for understanding male sterility of the cybrid pummelo (G1+HBP) with nuclear genome of HBP and foreign mitochondrial genome of G1. Scanning electron microscopy and transmission electron microscopy analyses of the anthers showed that the development of pollen wall in G1+HBP was severely defective with a lack of exine and sporopollenin formation. Proteomic analysis was used to identify the differentially expressed proteins between male sterile G1+HBP and fertile type (HBP) with the aim to clarify their potential roles in anther development and male sterility. On the basis of iTRAQ quantitative proteomics, we identified 2235 high-confidence protein groups, 666 of which showed differentially expressed profiles in one or more stages. Proteins up- or down-regulated in G1+HBP were mainly involved in carbohydrate and energy metabolism (e.g., pyruvate dehydrogenase, isocitrate dehydrogenase, ATP synthase, and malate dehydrogenase), nucleotide binding (RNA-binding proteins), protein synthesis and degradation (e.g., ribosome proteins and proteasome subunits). Additionally, the proteins located in mitochondria also showed changed expression patterns. These findings provide a valuable inventory of proteins involved in floral bud development and contribute to elucidate the mechanism of cytoplasmic male sterility in the cybrid pummelo.


Subject(s)
Citrus/metabolism , Flowers/metabolism , Mitochondrial Proteins/metabolism , Plant Proteins/metabolism , Proteome/metabolism , Carbohydrate Metabolism , Citrus/cytology , Citrus/growth & development , Flowers/cytology , Flowers/growth & development , Gene Expression Regulation, Plant , Mitochondrial Proteins/genetics , Molecular Sequence Annotation , Plant Proteins/genetics , Proteomics , Reproduction , Staining and Labeling , Transcriptome
6.
Plant J ; 75(6): 954-64, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23738603

ABSTRACT

Heterozyosity is an important feature of many plant genomes, and is related to heterosis. Sweet orange, a highly heterozygous species, is thought to have originated from an inter-species hybrid between pummelo and mandarin. To investigate the heterozygosity of the sweet orange genome and examine how this heterozygosity affects gene expression, we characterized the genome of Valencia orange for single nucleotide variations (SNVs), small insertions and deletions (InDels) and structural variations (SVs), and determined their functional effects on protein-coding genes and non-coding sequences. Almost half of the genes containing large-effect SNVs and InDels were expressed in a tissue-specific manner. We identified 3542 large SVs (>50 bp), including deletions, insertions and inversions. Most of the 296 genes located in large-deletion regions showed low expression levels. RNA-Seq reads and DNA sequencing reads revealed that the alleles of 1062 genes were differentially expressed. In addition, we detected approximately 42 Mb of contigs that were not found in the reference genome of a haploid sweet orange by de novo assembly of unmapped reads, and annotated 134 protein-coding genes within these contigs. We discuss how this heterozygosity affects the quality of genome assembly. This study advances our understanding of the genome architecture of sweet orange, and provides a global view of gene expression at heterozygous loci.


Subject(s)
Citrus sinensis/genetics , Gene Expression Regulation, Plant , Genetic Variation , Genome, Plant , Genome-Wide Association Study/methods , Contig Mapping , Molecular Sequence Annotation , Transcriptome
7.
BMC Plant Biol ; 14: 213, 2014 Aug 05.
Article in English | MEDLINE | ID: mdl-25091279

ABSTRACT

BACKGROUND: Sweet orange (Citrus sinensis) is one of the most important fruits world-wide. Because it is a woody plant with a long growth cycle, genetic studies of sweet orange are lagging behind those of other species. RESULTS: In this analysis, we employed ortholog identification and domain combination methods to predict the protein-protein interaction (PPI) network for sweet orange. The K-nearest neighbors (KNN) classification method was used to verify and filter the network. The final predicted PPI network, CitrusNet, contained 8,195 proteins with 124,491 interactions. The quality of CitrusNet was evaluated using gene ontology (GO) and Mapman annotations, which confirmed the reliability of the network. In addition, we calculated the expression difference of interacting genes (EDI) in CitrusNet using RNA-seq data from four sweet orange tissues, and also analyzed the EDI distribution and variation in different sub-networks. CONCLUSIONS: Gene expression in CitrusNet has significant modular features. Target of rapamycin (TOR) protein served as the central node of the hormone-signaling sub-network. All evidence supported the idea that TOR can integrate various hormone signals and affect plant growth. CitrusNet provides valuable resources for the study of biological functions in sweet orange.


Subject(s)
Citrus sinensis/metabolism , Protein Interaction Maps , Citrus sinensis/genetics , Genome, Plant , Plant Growth Regulators/metabolism , Sequence Analysis, RNA
8.
BMC Genomics ; 13: 397, 2012 Aug 16.
Article in English | MEDLINE | ID: mdl-22897898

ABSTRACT

BACKGROUND: Seedlessness is an important agronomic trait for citrus, and male sterility (MS) is one main cause of seedless citrus fruit. However, the molecular mechanism of citrus seedlessness remained not well explored. RESULTS: An integrative strategy combining suppression subtractive hybridization (SSH) library with cDNA microarray was employed to study the underlying mechanism of seedlessness of a Ponkan mandarin seedless mutant (Citrus reticulata Blanco). Screening with custom microarray, a total of 279 differentially expressed clones were identified, and 133 unigenes (43 contigs and 90 singletons) were obtained after sequencing. Gene Ontology (GO) distribution based on biological process suggested that the majority of differential genes are involved in metabolic process and respond to stimulus and regulation of biology process; based on molecular function they function as DNA/RNA binding or have catalytic activity and oxidoreductase activity. A gene encoding male sterility-like protein was highly up-regulated in the seedless mutant compared with the wild type, while several transcription factors (TFs) such as AP2/EREBP, MYB, WRKY, NAC and C2C2-GATA zinc-finger domain TFs were down-regulated. CONCLUSION: Our research highlighted some candidate pathways that participated in the citrus male gametophyte development and could be beneficial for seedless citrus breeding in the future.


Subject(s)
Citrus/genetics , Flowers/growth & development , Gene Expression Profiling/methods , Nucleic Acid Hybridization/methods , Oligonucleotide Array Sequence Analysis/methods , Citrus/growth & development , Expressed Sequence Tags , Flowers/genetics , Gene Expression Regulation, Developmental , Gene Expression Regulation, Plant , Gene Library , Genes, Plant , Phenotype , Plant Infertility/genetics , RNA, Plant/genetics
9.
Planta ; 236(4): 1107-24, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22622359

ABSTRACT

Somatic embryogenesis (SE) is a most promising technology that is used for in vitro germplasm conservation and genetic improvement via biotechnological approaches in citrus. Herein, three suppression subtractive hybridization (SSH) libraries were constructed using calluses of Citrus sinensis cv. 'Valencia' to explore the molecular mechanisms that underlie the SE in citrus. A total of 880 unisequences were identified by microarray screening based on these three SSH libraries. Gene ontology analysis of the differentially expressed genes indicated that nucleolus associated regulation and biogenesis processes, hormone signal transduction, and stress factors might be involved in SE. Transcription factors might also play an important role. LEC1/B3 domain regulatory network genes (LEC1, L1L, FUS3, ABI3, and ABI5) were isolated in citrus SE. Some new transcription factors associated with citrus SE, like a B3 domain containing gene and HB4, were identified. To understand the influence of these isolated genes on SE competence, their expression profiles were compared among callus lines of seven citrus cultivars with different SE competence. The expression dynamics suggested that these genes could be necessary for the SE initiation and might play a role in embryogenic competence maintenance in different cultivars. On the basis of gene expression profiles, an overview of major physiological and biosynthesis processes at different developmental stages during citrus SE is presented. For the first time, these data provide a global resource for transcriptional events important for SE in citrus, and the specific genes offer new information for further investigation on citrus SE maintenance and development.


Subject(s)
Citrus sinensis/genetics , Gene Expression Regulation, Plant/genetics , Plant Proteins/genetics , Transcriptome , Citrus sinensis/embryology , Citrus sinensis/metabolism , Citrus sinensis/ultrastructure , Cluster Analysis , DNA, Complementary/genetics , Expressed Sequence Tags , Gene Expression Profiling , Gene Library , Molecular Sequence Annotation , Nucleic Acid Hybridization , Oligonucleotide Array Sequence Analysis , Plant Somatic Embryogenesis Techniques , Signal Transduction , Transcription Factors/genetics
10.
J Sci Food Agric ; 92(3): 496-502, 2012 Feb.
Article in English | MEDLINE | ID: mdl-21732384

ABSTRACT

BACKGROUND: Like sweet orange (Citrus sinensis), tangerine (Citrus reticulata) is another citrus crop grown widely throughout the world. However, whether it shares a common mechanism with sweet orange in forming a given mastication trait is still unclear. In this study, three 'Nanfeng' tangerine cultivars, 'Yangxiao-26' ('YX-26') with inferior mastication trait, elite 'YX-26' with moderate mastication trait and 'Miguang' ('MG') with superior mastication trait, were selected to investigate the formation mechanism of mastication trait. RESULTS: 'MG' had the lowest contents of total pectin, protopectin and lignin and the highest gene expression levels of citrus polygalacturonase (PG) and pectin methylesterase (PME) at the end of fruit ripening, whereas 'YX-26' had the lowest water-soluble pectin (WSP) content, the highest lignin content and the lowest PG and PME expression levels. The contents of cellulose and hemicellulose were similar among the three tangerines. CONCLUSION: The fruit mastication trait of C. reticulata was determined by the proportions of WSP and protopectin as well as lignin content, not by cellulose and hemicellulose contents. Pectin content could be a major contribution to the feeling of mastication trait, while PG and PME exhibited an important role in forming a given mastication trait according to the present results as well as previous results for C. sinensis.


Subject(s)
Cell Wall/metabolism , Citrus/metabolism , Food Quality , Fruit/metabolism , Gene Expression Regulation, Plant , Lignin/biosynthesis , Pectins/biosynthesis , Carboxylic Ester Hydrolases/analysis , Carboxylic Ester Hydrolases/genetics , Carboxylic Ester Hydrolases/metabolism , Cell Wall/chemistry , Cell Wall/enzymology , Cellulose/analysis , Cellulose/biosynthesis , Chemical Phenomena , China , Citrus/chemistry , Citrus/growth & development , Fruit/chemistry , Fruit/growth & development , Humans , Lignin/analysis , Mastication , Pectins/analysis , Pectins/chemistry , Plant Proteins/analysis , Plant Proteins/genetics , Plant Proteins/metabolism , Polygalacturonase/analysis , Polygalacturonase/genetics , Polygalacturonase/metabolism , Polysaccharides/analysis , Polysaccharides/biosynthesis , Sensation , Solubility , Species Specificity
11.
BMC Genomics ; 12: 63, 2011 Jan 26.
Article in English | MEDLINE | ID: mdl-21269450

ABSTRACT

BACKGROUND: After several years in the juvenile phase, trees undergo flowering transition to become mature (florally competent) trees. This transition depends on the balanced expression of a complex network of genes that is regulated by both endogenous and environmental factors. However, relatively little is known about the molecular processes regulating flowering transition in woody plants compared with herbaceous plants. RESULTS: Comparative transcript profiling of spring shoots after self-pruning was performed on a spontaneously early flowering trifoliate orange mutant (precocious trifoliate orange, Poncirus trifoliata) with a short juvenile phase and the wild-type (WT) tree by using massively parallel signature sequencing (MPSS). A total of 16,564,500 and 16,235,952 high quality reads were obtained for the WT and the mutant (MT), respectively. Interpretation of the MPSS signatures revealed that the total number of transcribed genes in the MT (31,468) was larger than in the WT (29,864), suggesting that newly initiated transcription occurs in the MT. Further comparison of the transcripts revealed that 2735 genes had more than twofold expression difference in the MT compared with the WT. In addition, we identified 110 citrus flowering-time genes homologous with known elements of flowering-time pathways through sequencing and bioinformatics analysis. These genes are highly conserved in citrus and other species, suggesting that the functions of the related proteins in controlling reproductive development may be conserved as well. CONCLUSION: Our results provide a foundation for comparative gene expression studies between WT and precocious trifoliate orange. Additionally, a number of candidate genes required for the early flowering process of precocious trifoliate orange were identified. These results provide new insight into the molecular processes regulating flowering time in citrus.


Subject(s)
Flowers/genetics , Gene Expression Profiling/methods , High-Throughput Nucleotide Sequencing/methods , Plants, Genetically Modified/genetics , Poncirus/genetics , Flowers/physiology , Plants, Genetically Modified/physiology , Poncirus/physiology
12.
Plant Mol Biol ; 76(1-2): 187-204, 2011 May.
Article in English | MEDLINE | ID: mdl-21533840

ABSTRACT

To isolate differentially expressed genes during the juvenile-to-adult phase transition of an early-flowering trifoliate orange mutant (precocious trifoliate orange, Poncirus trifoliata), suppression subtractive hybridization was performed. In total, 463 cDNA clones chosen by differential screening of 1,920 clones were sequenced and 178 differentially expressed genes were identified, among which 41 sequences did not match any known nucleotide sequence. Analysis of expression profiles of the differentially expressed genes through hybridization on customized chips revealed their expression change was associated with the phase transition from juvenile to adult in the mutant. Open reading frames of nine selected genes were successfully determined by rapid amplification of cDNA ends. Expression analysis of these genes by real-time RT-PCR showed that transcript levels of several genes were associated with floral induction and inflorescence development. Among these genes, HM596718, a sequence sharing a high degree of similarity with Arabidopsis EARLY FLOWERING 5 (AtELF5) was discovered. Real-time PCR and in situ hybridization indicated its expression pattern was closely correlated with floral induction and flowering of the mutant. Ectopic expression of the gene in Arabidopsis caused early flowering; however, its functional characterization is different than the role of AtELF5 observed in Arabidopsis. A yeast two-hybrid assay indicated that PtELF5 significantly interacted with DUF1336 domain of a hypothetical protein, which has not yet been functionally characterized in woody plants. These findings suggest that PtELF5 may be a novel gene that plays an important role during the early flowering of precocious trifoliate orange.


Subject(s)
Flowers/genetics , Gene Expression Profiling , Genes, Plant/genetics , Plant Proteins/genetics , Poncirus/genetics , Amino Acid Sequence , Arabidopsis/genetics , Arabidopsis/growth & development , Cloning, Molecular , Flowers/growth & development , Gene Expression Regulation, Developmental , Gene Expression Regulation, Plant , Gene Library , In Situ Hybridization , Molecular Sequence Data , Mutation , Nucleic Acid Hybridization , Plant Proteins/metabolism , Plants, Genetically Modified , Poncirus/growth & development , Reverse Transcriptase Polymerase Chain Reaction , Sequence Homology, Amino Acid , Time Factors , Two-Hybrid System Techniques
13.
DNA Res ; 28(5)2021 Sep 13.
Article in English | MEDLINE | ID: mdl-34424285

ABSTRACT

Citrus nucellar poly-embryony (NPE) is a mode of sporophytic apomixis that asexual embryos formed in the seed through adventitious embryogenesis from the somatic nucellar cells. NPE allows clonal propagation of rootstocks, but it impedes citrus cross breeding. To understand the cellular processes involved in NPE initiation, we profiled the transcriptomes and DNA methylomes in laser microdissection captured citrus apomictic cells. In apomictic cells, ribosome biogenesis and protein degradation were activated, whereas auxin polar transport was repressed. Reactive oxygen species (ROS) accumulated in the poly-embryonic ovules, and response to oxidative stress was provoked. The global DNA methylation level, especially that of CHH context, was decreased, whereas the methylation level of the NPE-controlling key gene CitRWP was increased. A C2H2 domain-containing transcription factor gene and CitRWP co-expressed specifically in apomictic cells may coordinate to initiate NPE. The activated embryogenic development and callose deposition processes indicated embryogenic fate of nucellar embryo initial (NEI) cells. In our working model for citrus NPE initiation, DNA hyper-methylation may activate transcription of CitRWP, which increases C2H2 expression and ROS accumulation, triggers epigenetic regulation and regulates cell fate transition and NEI cell identity in the apomictic cells.


Subject(s)
Citrus , Citrus/genetics , Embryonic Development , Epigenesis, Genetic , Epigenome , Plant Breeding , Transcriptome
14.
Sci China Life Sci ; 64(7): 1165-1173, 2021 Jul.
Article in English | MEDLINE | ID: mdl-33009992

ABSTRACT

Delayed greening of young leaves is an unusual phenomenon of plants in nature. Citrus are mostly evergreen tree species. Here, a natural mutant of "Guanxi" pummelo (Citrus maxima), which shows yellow leaves at the young stage, was characterized to identify the genes underlying the trait of delayed leaf greening in plants. A segregating population with this mutant as the seed parent and a normal genotype as the pollen parent was generated. Two DNA pools respectively from the leaves of segregating seedlings with extreme phenotypes of normal leaf greening and delayed leaf greening were collected for sequencing. Bulked segregant analysis (BSA) and InDel marker analysis demonstrated that the delayed leaf greening trait is governed by a 0.3 Mb candidate region on chromosome 6. Gene expression analysis further identified a key candidate gene (Citrus Delayed Greening gene 1, CDG1) in the 0.3 Mb region, which showed significantly differential expression between the genotypes with delayed and normal leaf greening phenotypes. There was a 67 bp InDel region difference in the CDG1 promoter and the InDel region contains a TATA-box element. Confocal laser-scanning microscopy revealed that the CDG1-GFP fusion protein signals were co-localized with the chloroplast signals in the protoplasts. Overexpression of CDG1 in tobacco and Arabidopsis led to the phenotype of delayed leaf greening. These results suggest that the CDG1 gene is involved in controlling the delayed leaf greening phenotype with important functions in chloroplast development.


Subject(s)
Chloroplast Proteins/metabolism , Citrus/genetics , Plant Leaves/metabolism , Protein Kinases/genetics , Color , Gene Expression Regulation, Plant , Genotype , Mutation , Phenotype
15.
Plant Mol Biol ; 74(1-2): 129-42, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20602150

ABSTRACT

A MADS-box gene was isolated using the suppressive subtractive hybridization library between early-flowering mutant and wild-type trifoliate orange (Poncirus trifoliata L. Raf.). This gene is highly homologous with Arabidopsis SHORT VEGETATIVE PHASE (SVP). Based on real-time PCR and in situ hybridization during bud differentiation, PtSVP was expressed intensively in dormant tissue and vegetative meristems. PtSVP transcripts were detected in apical meristems before floral transition, then down-regulated during the transition. PtSVP expression was higher in differentiated (flower primordium) than in undifferentiated cells (apical meristems). The PtSVP expression pattern during apical meristem determination suggested that its function is not to depress flower initiation but to maintain meristem development. Transcription of PtSVP in Arabidopsis svp-41 showed partially rescued SVP function. Ectopic overexpression of PtSVP in wild-type Arabidopsis induced late flowering similar to the phenotypes induced by other SVP/StMADS-11-like genes, but transformants produced additional trichomes and floral defects, such as flower-like structures instead of carpels. Ectopic expression of PtSVP in tobacco also caused additional florets. Overexpression of PtSVP in tobacco inhibited early transition of the coflorescence and prolonged coflorescence development, thus causing additional florets at the later stage. A yeast two-hybrid assay indicated that PtSVP significantly interacted with PtAP1, a homolog of Arabidopsis APETALA1 (AP1). These findings suggest that citrus SVP homolog genes are involved in flowering time regulation and may influence inflorescence meristem identity in some conditions or genetic backgrounds. SVP homologs might have evolved among plant species, but the protein functions are conserved between Arabidopsis and citrus.


Subject(s)
Genes, Plant , Poncirus/growth & development , Poncirus/genetics , Arabidopsis/genetics , Arabidopsis/growth & development , Arabidopsis/metabolism , Cloning, Molecular , Evolution, Molecular , Flowers/growth & development , Gene Expression Regulation, Developmental , Gene Expression Regulation, Plant , Meristem/growth & development , Phenotype , Phylogeny , Plant Proteins/genetics , Plant Proteins/metabolism , Plants, Genetically Modified , Poncirus/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Seasons , Species Specificity , Nicotiana/genetics , Nicotiana/growth & development , Nicotiana/metabolism , Two-Hybrid System Techniques
16.
J Sci Food Agric ; 90(9): 1479-84, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20549800

ABSTRACT

BACKGROUND: FJ72-1 navel orange and its bud mutant FJWC exhibit differences in melting texture character which are influenced mostly by cell wall metabolism. Here we compared the contents of water soluble pectin (WSP), protopectin, total pectin (TP), cellulose, and hemicellulose, activities of polygalaturonase (PG), pectin methylesterase (PME), pectate lyases (PL), cellulase (Cel) and gene expression levels of PG, PME, PL and Cel between the two cultivars. RESULTS: The content of cellulose and hemicellulose decreased progressively during fruit ripening. At the harvest time (230 DAF), the content of cellulose and hemicellulose in FJWC were obviously higher than those in FJ72-1; the WSP content, PG activities and its gene expression level in FJWC was lower than those in FJ72-1. Moreover, gene expression levels of PME and Cel in FJWC were only one-quarter of those in FJ72-1 at 230 DAF. CONCLUSION: The present work showed that the inferior melting character of FJWC attributed to the lower WSP, higher TP or protopectins, higher cellulose and hemicellulose than those in the pulp of FJ72-1 at harvest time. Lower expression levels of PG, PME and Cel at harvest time might be associated with the inferior melting character.


Subject(s)
Cell Wall/enzymology , Cell Wall/metabolism , Chemical Phenomena , Citrus sinensis/metabolism , Fruit/metabolism , Mastication , Carboxylic Ester Hydrolases/genetics , Carboxylic Ester Hydrolases/metabolism , Cellulase/genetics , Cellulase/metabolism , Cellulose/analysis , Fruit/growth & development , Gene Expression , Pectins/analysis , Polygalacturonase/genetics , Polygalacturonase/metabolism , Polysaccharide-Lyases/genetics , Polysaccharide-Lyases/metabolism , Polysaccharides/analysis , RNA, Messenger/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Seasons , Solubility , Species Specificity
17.
J Integr Plant Biol ; 52(10): 856-67, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20883438

ABSTRACT

Expressed sequence tag (EST) analysis of the pulp of the red-fleshed mutant 'Cara Cara' navel orange provided a starting point for gene discovery and transcriptome survey during citrus fruit maturation. Interpretation of the EST datasets revealed that the mutant pulp transcriptome held a high section of stress responses related genes, such as the type III metallothionein-like gene (6.0%), heat shock protein (2.8%), Cu/Zn superoxide dismutase (0.8%), late embryogenesis abundant protein 5 (0.8%), etc. 133 transcripts were detected to be differentially expressed between the red mutant and its orange-color wild genotype 'Washington' via digital expression analysis. Among them, genes involved in metabolism, defense/stress and signal transduction were statistical overrepresented. Fifteen transcription factors, composed of NAM, ATAF, and CUC transcription factor (NAC); myeloblastosis (MYB); myelocytomatosis (MYC); basic helix-loop-helix (bHLH); basic leucine zipper (bZIP) domain members, were also included. The data reflected the distinct expression profile and the unique regulatory module associated with these two genotypes. Eight differently expressed genes analyzed in digital were validated by quantitative real-time polymerase chain reaction. For structural polymorphism, both simple sequence repeats and single nucleotide polymorphisms (SNP) loci were surveyed; dinucleotide presentation revealed a bias toward AG/GA/TC/CT repeats (52.5%), against GC/CG repeats (0%). SNPs analysis found that transitions (73%) outnumbered transversions (27%). Seventeen potential cultivar-specific and 387 heterozygous SNP loci were detected from 'Cara Cara' and 'Washington' EST pool.


Subject(s)
Citrus sinensis/metabolism , Expressed Sequence Tags/metabolism , Fruit/metabolism , Citrus sinensis/genetics , Fruit/genetics , Plant Proteins/genetics , Polymorphism, Single Nucleotide
18.
J Huazhong Univ Sci Technolog Med Sci ; 37(5): 711-718, 2017 Oct.
Article in English | MEDLINE | ID: mdl-29058284

ABSTRACT

Food intake has a great influence on blood glucose in patients with diabetes. This study was to determine the glycemic index (GI) and glycemic load (GL) of a particular pomelo named Majia pomelo and its effects on postprandial glucose (PPG) in patients with type 2 diabetes (T2D). Twenty healthy subjects and 20 T2D patients (controlled on lifestyle measures and/or metformin) were tested on 2 separate days with 50 g of glucose and 50 g equivalent of carbohydrates from Majia pomelo for GI measurement. To test effects of Majia pomelo on PPG, 19 hospitalized T2D patients (controlled on insulin therapy) were selected for a 9-day study. The dose of insulin for each patient was adjusted on the first 3 days. A total of 100 mg Majia pomelo was consumed per meal in the last 3 tested days. Blood glucose was measured to evaluate the glycemic excursions. The GIs for Majia pomelo in healthy individuals and T2D patients were 78.34±1.88 and 72.15±1.95 respectively. The value of GL was as low as 4.23 in diabetic patients with serving size of 100 g pomelo, indicting Majia pomelo as a high GI but low GL fruit. Consumption of Majia pomelo in hospitalized T2D patients did not cause significant glucose fluctuation. It was concluded that high GI pomelo can serve as a low GL fruit if it is consumed with a limited daily amount and thus can be supplied to diabetic patients. These results may mean more varieties of food choices for T2D patients.


Subject(s)
Citrus/chemistry , Diabetes Mellitus, Type 2/diet therapy , Glycemic Index/drug effects , Glycemic Load/drug effects , Plant Extracts/administration & dosage , Blood Glucose/analysis , Blood Glucose/drug effects , Case-Control Studies , Diabetes Mellitus, Type 2/blood , Diabetes Mellitus, Type 2/drug therapy , Female , Hospitalization , Humans , Male , Metformin/therapeutic use , Middle Aged , Plant Extracts/pharmacology , Postprandial Period
19.
Yi Chuan Xue Bao ; 33(7): 647-54, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16875323

ABSTRACT

This study focuses on the relationship between the genetic variation of calli and the competence for somatic embryogenesis in citrus. The DNA content of 35 citrus calli of different genotypes was measured three times by flow cytometry during a period of four years. The results showed that 71.4 % of the genotypes had a progressive increase of varied cells, while those of Page tangelo, Shamouti sweet orange, Russ navel orange and Cleopatra decreased; significant difference in the variation degree (percentages) existed among genotypes. Studies carried out on the induction of somatic embryogenesis revealed that 9 out of the 35 genotypes had still kept the competence of somatic embryogenesis, and the rest 26 had lost the competence. Correlation analysis indicated that there was no significant relationship between the variation degree and the embryogenesis competence r = -0.10 (P < 0.01), neither for the relationship between the subculture duration and the regeneration capacity.


Subject(s)
Citrus/genetics , DNA, Plant/physiology , Embryonic Development/genetics , Ploidies , Aneuploidy , Citrus/embryology , Haploidy , Polyploidy , Seeds/genetics , Seeds/physiology , Tissue Culture Techniques
20.
Article in English | MEDLINE | ID: mdl-16477128

ABSTRACT

Fruit color is one of the most important external quality traits. Mutants with different color are useful for the study of regulating mechanism of coloration progress. A novel mutant, Fengwan, derived from Fengjie72-1 navel orange (Citrus sinensis L. Osbeck), has the distinctive characteristic of the coloration delay of 30 d or so, with the change in total soluble solid (TSS) and the ratio of TSS/acidity. In order to understand the mechanism underlying the difference of coloration between the mutant and the parental variety, the chlorophyll and carotenoid contents in the peel of two cultivars at different maturation stages were analyzed. The expression of genes responsible for some carotenoid biosynthetic enzymes (phytoene synthase, phytoene desaturase, zeta-carotene desaturase, beta-lycopene cyclase, beta-carotene hydroxylase) and chlorophyllase using the RT-PCR technique were also studied. The distinct decrease of chlorophyll in the peel of Fengwan navel orange occurred from early November to late November, about three weeks later than that of its original cultivar. Obvious accumulation of carotenoid in the peel of the mutant began on Dec.12, while that of the original cultivar began on Nov. 3. Analysis of independent-samples t-test showed that the chlorophyll content of the peel of Fengwan navel orange from October to November was significantly higher, and the carotenoid content from December to January was significantly lower than that in the peel of the parental line, Fengjie72-1 navel orange. The expression of chlorophyllase gene in the peel of Fengwan navel orange reached a maximum in January and kept at a slightly lower level from October to December than that of Fengjie 72-1 orange, while the time of gene expression about some carotenoid biosynthetic enzymes reaching a maximum in the peel of the mutant were one month later than that of the original cultivar.


Subject(s)
Carotenoids/analysis , Chlorophyll/analysis , Citrus/chemistry , Pigments, Biological/physiology , Chlorophyll/physiology , Citrus/enzymology , Citrus sinensis , Enzymes/genetics , Enzymes/metabolism , Fruit/chemistry , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Plant , Pigmentation/physiology , Reverse Transcriptase Polymerase Chain Reaction
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