Search details
1.
Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome.
Cell
; 166(3): 766-778, 2016 Jul 28.
Article
in English
| MEDLINE | ID: mdl-27453469
2.
Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames.
Mol Cell
; 83(6): 994-1011.e18, 2023 03 16.
Article
in English
| MEDLINE | ID: mdl-36806354
3.
Detection and editing of the updated Arabidopsis plastid- and mitochondrial-encoded proteomes through PeptideAtlas.
Plant Physiol
; 194(3): 1411-1430, 2024 Feb 29.
Article
in English
| MEDLINE | ID: mdl-37879112
4.
What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?
Mol Cell Proteomics
; 22(9): 100631, 2023 09.
Article
in English
| MEDLINE | ID: mdl-37572790
5.
The ProteomeXchange consortium at 10 years: 2023 update.
Nucleic Acids Res
; 51(D1): D1539-D1548, 2023 01 06.
Article
in English
| MEDLINE | ID: mdl-36370099
6.
SpectiCal: m/z Calibration of MS2 Peptide Spectra Using Known Low Mass Ions.
J Proteome Res
; 23(4): 1519-1530, 2024 Apr 05.
Article
in English
| MEDLINE | ID: mdl-38538550
7.
Detection of the Arabidopsis Proteome and Its Post-translational Modifications and the Nature of the Unobserved (Dark) Proteome in PeptideAtlas.
J Proteome Res
; 23(1): 185-214, 2024 01 05.
Article
in English
| MEDLINE | ID: mdl-38104260
8.
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome.
J Proteome Res
; 2024 May 29.
Article
in English
| MEDLINE | ID: mdl-38810119
9.
The 2023 Report on the Proteome from the HUPO Human Proteome Project.
J Proteome Res
; 23(2): 532-549, 2024 02 02.
Article
in English
| MEDLINE | ID: mdl-38232391
10.
Universal Spectrum Identifier for mass spectra.
Nat Methods
; 18(7): 768-770, 2021 07.
Article
in English
| MEDLINE | ID: mdl-34183830
11.
ARAX: a graph-based modular reasoning tool for translational biomedicine.
Bioinformatics
; 39(3)2023 03 01.
Article
in English
| MEDLINE | ID: mdl-36752514
12.
The Arabidopsis PeptideAtlas: Harnessing worldwide proteomics data to create a comprehensive community proteomics resource.
Plant Cell
; 33(11): 3421-3453, 2021 11 04.
Article
in English
| MEDLINE | ID: mdl-34411258
13.
Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future.
Proteomics
; 23(7-8): e2200014, 2023 04.
Article
in English
| MEDLINE | ID: mdl-36074795
14.
Does the Ubiquitination Degradation Pathway Really Reach inside of the Chloroplast? A Re-Evaluation of Mass Spectrometry-Based Assignments of Ubiquitination.
J Proteome Res
; 22(6): 2079-2091, 2023 06 02.
Article
in English
| MEDLINE | ID: mdl-37092802
15.
Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite.
J Proteome Res
; 22(2): 615-624, 2023 02 03.
Article
in English
| MEDLINE | ID: mdl-36648445
16.
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics.
J Proteome Res
; 22(2): 632-636, 2023 02 03.
Article
in English
| MEDLINE | ID: mdl-36693629
17.
The 2022 Report on the Human Proteome from the HUPO Human Proteome Project.
J Proteome Res
; 22(4): 1024-1042, 2023 04 07.
Article
in English
| MEDLINE | ID: mdl-36318223
18.
Toward an Integrated Machine Learning Model of a Proteomics Experiment.
J Proteome Res
; 22(3): 681-696, 2023 03 03.
Article
in English
| MEDLINE | ID: mdl-36744821
19.
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.
J Proteome Res
; 22(2): 287-301, 2023 02 03.
Article
in English
| MEDLINE | ID: mdl-36626722
20.
Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future.
Mol Cell Proteomics
; 20: 100071, 2021.
Article
in English
| MEDLINE | ID: mdl-33711481