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1.
Metab Eng ; 2024 Jun 26.
Article in English | MEDLINE | ID: mdl-38942196

ABSTRACT

Yarrowia lipolytica is an industrial yeast that can convert waste oil to value-added products. However, it is unclear how this yeast metabolizes lipid feedstocks, specifically triacylglycerol (TAG) substrates. This study used 13C-metabolic flux analysis (13C-MFA), genome-scale modeling, and transcriptomics analyses to investigate Y. lipolytica W29 growth with oleic acid, glycerol, and glucose. Transcriptomics data was used to guide 13C-MFA model construction and to validate the 13C-MFA results. The 13C-MFA data was then used to constrain a genome-scale model (GSM), which predicted Y. lipolytica fluxes, cofactor balance, and theoretical yields of terpene products. The three data sources provided new insights into cellular regulation during catabolism of glycerol and fatty acid components of TAG substrates, and how their consumption routes differ from glucose catabolism. We found that (1) over 80% of acetyl-CoA from oleic acid is processed through the glyoxylate shunt, a pathway that generates less CO2 compared to the TCA cycle, (2) the carnitine shuttle is a key regulator of the cytosolic acetyl-CoA pool in oleic acid and glycerol cultures, (3) the oxidative pentose phosphate pathway and mannitol cycle are key routes for NADPH generation, (4) the mannitol cycle and alternative oxidase activity help balance excess NADH generated from ß-oxidation of oleic acid, and (5) asymmetrical gene expressions and GSM simulations of enzyme usage suggest an increased metabolic burden for oleic acid catabolism.

2.
Plant Physiol ; 182(2): 819-839, 2020 02.
Article in English | MEDLINE | ID: mdl-31740503

ABSTRACT

The marine microalgae Nannochloropsis oceanica (CCMP1779) is a prolific producer of oil and is considered a viable and sustainable resource for biofuel feedstocks. Nitrogen (N) availability has a strong impact on the physiological status and metabolism of microalgal cells, but the exact nature of this response is poorly understood. To fill this gap we performed transcriptomic profiling combined with cellular and molecular analyses of N. oceanica CCMP1779 during the transition from quiescence to autotrophy. N deprivation-induced quiescence was accompanied by a strong reorganization of the photosynthetic apparatus and changes in the lipid homeostasis, leading to accumulation of triacylglycerol. Cell cycle activation and re-establishment of photosynthetic activity observed in response to resupply of the growth medium with N were accompanied by a rapid degradation of triacylglycerol stored in lipid droplets (LDs). Besides observing LD translocation into vacuoles, we also provide evidence for direct interaction between the LD surface protein (NoLDSP) and AUTOPHAGY-RELATED8 (NoATG8) protein and show a role of microlipophagy in LD turnover in N. oceanica CCMP1779. This knowledge is crucial not only for understanding the fundamental mechanisms controlling the cellular energy homeostasis in microalgal cells but also for development of efficient strategies to achieve higher algal biomass and better microalgal lipid productivity.


Subject(s)
Autotrophic Processes/genetics , Microalgae/metabolism , Nitrogen/metabolism , Nutrigenomics , Photosynthesis/genetics , Stramenopiles/metabolism , Triglycerides/metabolism , Autophagy/genetics , Autophagy/physiology , Autophagy-Related Protein 8 Family/metabolism , Autotrophic Processes/physiology , Cell Cycle/genetics , Cell Cycle/physiology , Cluster Analysis , Fatty Acids/biosynthesis , Fatty Acids/metabolism , Gene Expression Profiling , Gene Expression Regulation/genetics , Gene Expression Regulation/physiology , Gene Ontology , Homeostasis/genetics , Homeostasis/physiology , Lipid Droplets/metabolism , Lipid Droplets/ultrastructure , Lipid Metabolism/genetics , Lipid Metabolism/physiology , Microalgae/genetics , Microscopy, Electron, Transmission , Multigene Family , Photosynthesis/physiology , Stramenopiles/genetics , Vacuoles/metabolism , Vacuoles/ultrastructure
3.
Plant Cell ; 30(2): 447-465, 2018 02.
Article in English | MEDLINE | ID: mdl-29437989

ABSTRACT

Photosynthesis occurs in the thylakoid membrane, where the predominant lipid is monogalactosyldiacylglycerol (MGDG). As environmental conditions change, photosynthetic membranes have to adjust. In this study, we used a loss-of-function Chlamydomonas reinhardtii mutant deficient in the MGDG-specific lipase PGD1 (PLASTID GALACTOGLYCEROLIPID DEGRADATION1) to investigate the link between MGDG turnover, chloroplast ultrastructure, and the production of reactive oxygen species (ROS) in response to different adverse environmental conditions. The pgd1 mutant showed altered MGDG abundance and acyl composition and altered abundance of photosynthesis complexes, with an increased PSII/PSI ratio. Transmission electron microscopy showed hyperstacking of the thylakoid grana in the pgd1 mutant. The mutant also exhibited increased ROS production during N deprivation and high light exposure. Supplementation with bicarbonate or treatment with the photosynthetic electron transport blocker DCMU protected the cells against oxidative stress in the light and reverted chlorosis of pgd1 cells during N deprivation. Furthermore, exposure to stress conditions such as cold and high osmolarity induced the expression of PGD1, and loss of PGD1 in the mutant led to increased ROS production and inhibited cell growth. These findings suggest that PGD1 plays essential roles in maintaining appropriate thylakoid membrane composition and structure, thereby affecting growth and stress tolerance when cells are challenged under adverse conditions.


Subject(s)
Algal Proteins/metabolism , Chlamydomonas reinhardtii/enzymology , Galactolipids/metabolism , Lipase/metabolism , Thylakoids/metabolism , Algal Proteins/genetics , Chlamydomonas reinhardtii/genetics , Chlamydomonas reinhardtii/physiology , Chloroplasts/metabolism , Electron Transport , Environment , Lipase/genetics , Photosynthesis , Stress, Physiological
4.
Proc Natl Acad Sci U S A ; 112(10): 2948-53, 2015 Mar 10.
Article in English | MEDLINE | ID: mdl-25713372

ABSTRACT

Small molecule-based fluorescent probes have been used for real-time visualization of live cells and tracking of various cellular events with minimal perturbation on the cells being investigated. Given the wide utility of the (histidine)6-Ni(2+)-nitrilotriacetate (Ni-NTA) system in protein purification, there is significant interest in fluorescent Ni(2+)-NTA-based probes. Unfortunately, previous Ni-NTA-based probes suffer from poor membrane permeability and cannot label intracellular proteins. Here, we report the design and synthesis of, to our knowledge, the first membrane-permeable fluorescent probe Ni-NTA-AC via conjugation of NTA with fluorophore and arylazide followed by coordination with Ni(2+) ions. The probe, driven by Ni(2+)-NTA, binds specifically to His-tags genetically fused to proteins and subsequently forms a covalent bond upon photoactivation of the arylazide, leading to a 13-fold fluorescence enhancement. The arylazide is indispensable not only for fluorescence enhancement, but also for strengthening the binding between the probe and proteins. Significantly, the Ni-NTA-AC probe can rapidly enter different types of cells, even plant tissues, to target His-tagged proteins. Using this probe, we visualized the subcellular localization of a DNA repair protein, Xeroderma pigmentosum group A (XPA122), which is known to be mainly enriched in the nucleus. We also demonstrated that the probe can image a genetically engineered His-tagged protein in plant tissues. This study thus offers a new opportunity for in situ visualization of large libraries of His-tagged proteins in various prokaryotic and eukaryotic cells.


Subject(s)
Histidine/metabolism , Proteins/metabolism , Fluorescent Dyes , HeLa Cells , Humans
5.
Biochim Biophys Acta ; 1861(9 Pt B): 1269-1281, 2016 09.
Article in English | MEDLINE | ID: mdl-26883557

ABSTRACT

Photosynthetic microalgae have promise as biofuel feedstock. Under certain conditions, they produce substantial amounts of neutral lipids, mainly in the form of triacylglycerols (TAGs), which can be converted to fuels. Much of our current knowledge on the genetic and molecular basis of algal neutral lipid metabolism derives mainly from studies of plants, i.e. seed tissues, and to a lesser extent from direct studies of algal lipid metabolism. Thus, the knowledge of TAG synthesis and the cellular trafficking of TAG precursors in algal cells is to a large extent based on genome predictions, and most aspects of TAG metabolism have yet to be experimentally verified. The biofuel prospects of microalgae have raised the interest in mechanistic studies of algal TAG biosynthesis in recent years and resulted in an increasing number of publications on lipid metabolism in microalgae. In this review we summarize the current findings on genetic, molecular and physiological studies of TAG accumulation in microalgae. Special emphasis is on the functional analysis of key genes involved in TAG synthesis, molecular mechanisms of regulation of TAG biosynthesis, as well as on possible mechanisms of lipid droplet formation in microalgal cells. This article is part of a Special Issue entitled: Plant Lipid Biology edited by Kent D. Chapman and Ivo Feussner.


Subject(s)
Lipid Metabolism/genetics , Lipids/biosynthesis , Microalgae/metabolism , Triglycerides/biosynthesis , Biofuels , Fatty Acids/biosynthesis , Genome, Plant , Lipids/genetics , Microalgae/genetics , Photosynthesis/genetics , Triglycerides/genetics
6.
Subcell Biochem ; 86: 179-205, 2016.
Article in English | MEDLINE | ID: mdl-27023236

ABSTRACT

Plant and algal oils are some of the most energy-dense renewable compounds provided by nature. Triacylglycerols (TAGs) are the major constituent of plant oils, which can be converted into fatty acid methyl esters commonly known as biodiesel. As one of the most efficient producers of TAGs, photosynthetic microalgae have attracted substantial interest for renewable fuel production. Currently, the big challenge of microalgae based TAGs for biofuels is their high cost compared to fossil fuels. A conundrum is that microalgae accumulate large amounts of TAGs only during stress conditions such as nutrient deprivation and temperature stress, which inevitably will inhibit growth. Thus, a better understanding of why and how microalgae induce TAG biosynthesis under stress conditions would allow the development of engineered microalgae with increased TAG production during conditions optimal for growth. Land plants also synthesize TAGs during stresses and we will compare new findings on environmental stress-induced TAG accumulation in plants and microalgae especially in the well-characterized model alga Chlamydomonas reinhardtii and a biotechnologically relevant genus Nannochloropsis.


Subject(s)
Microalgae/metabolism , Photosynthesis , Plants/metabolism , Triglycerides/metabolism , Microalgae/cytology , Stress, Physiological , Triglycerides/biosynthesis
7.
Biochem Biophys Res Commun ; 460(2): 227-32, 2015 May 01.
Article in English | MEDLINE | ID: mdl-25769955

ABSTRACT

In vivo approaches to inducing an effective immune response focus on targeted antigen (Ag) delivery to dendritic cells (DCs). In this study, we developed a new method of targeting plasmid DNA and/or the antigen (Ag)-antibody (Ab) complex to DCs via the DC receptor DEC-205, also known as cluster of differentiation CD205. We cloned and expressed a recombinant protein composed of mouse DEC-205-specific single-chain fragment variable region (mDEC-205-scFv), the streptococcal protein G (SPG) IgG-binding domain and cationic peptide (CP), which named mDEC205-scFv-SPG-CP (msSC). In vitro, the recombinant protein msSC can specifically bind to DCs through the section of mDEC-205-scFv, and bound the Ag-Ab complex via SPG as well as plasmid DNA through electrostatic bonding with CP in vitro. In addition, msSC functioned in a manner similar to anti-DEC-205 monoclonal Ab and bound to mouse bone marrow-derived DCs. It was demonstrated in vivo that msSC can target plasmid DNA to DCs, resulting in efficient uptake and expression. Moreover, msSC can form a complex with pGL3-CMV and transport it to draining lymph nodes when injected in vivo. These results indicate that msSC can be used as a carrier protein for vaccine delivery to DCs via formation of plasmid DNA-Ag-Ab ternary complexes.


Subject(s)
Dendritic Cells/metabolism , Amino Acid Sequence , Animals , Antibodies/immunology , Antigen-Antibody Complex/immunology , Antigens/immunology , Cell Line, Transformed , Dendritic Cells/immunology , Mice , Mice, Inbred BALB C , Molecular Sequence Data
8.
Plant Cell Environ ; 38(1): 101-17, 2015 Jan.
Article in English | MEDLINE | ID: mdl-24906022

ABSTRACT

In Arabidopsis thaliana, the expression of two genes encoding acyl-CoA-binding proteins (ACBPs) AtACBP1 and AtACBP4, were observed to be induced by lead [Pb(II)] in shoots and roots in qRT-PCR analyses. Quantitative GUS (ß-glucuronidase) activity assays confirmed induction of AtACBP1pro::GUS by Pb(II). Electrophoretic mobility shift assays (EMSAs) revealed that Pas elements in the 5'-flanking region of AtACBP1 were responsive to Pb(II) treatment. AtACBP1 and AtACBP4 were further compared in Pb(II) uptake using Brassica juncea, a potential candidate for phytoremediation given its rapid growth, large roots, high biomass and good capacity to accumulate heavy metals. Results from atomic absorption analyses on transgenic B. juncea expressing AtACBP1 or AtACBP4 indicated Pb(II) accumulation in roots. Subsequent Pb(II)-tracing assays demonstrated Pb(II) accumulation in the cytosol of root tips and vascular tissues of transgenic B. juncea AtACBP1-overexpressors (OXs) and AtACBP4-OXs and transgenic Arabidopsis AtACBP1-OXs. Transgenic Arabidopsis AtACBP1-OXs sequestered Pb(II) in the trichomes and displayed tolerance to hydrogen peroxide (H2 O2 ) treatment. In addition, AtACBP1 and AtACBP4 were H2 O2 -induced in the roots of wild-type Arabidopsis, while lipid hydroperoxide (LOOH) measurements of B. juncea AtACBP1-OX and AtACBP4-OX roots suggested that AtACBP1 and AtACBP4 can protect lipids against Pb(II)-induced lipid peroxidation.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/genetics , Carrier Proteins/metabolism , Lead/metabolism , Mustard Plant/metabolism , Arabidopsis Proteins/genetics , Biodegradation, Environmental , Biomass , Carrier Proteins/genetics , Gene Expression , Gene Expression Regulation, Plant , Genes, Reporter , Hydrogen Peroxide/pharmacology , Lead/pharmacology , Lipid Peroxidation , Mustard Plant/cytology , Mustard Plant/genetics , Oxidative Stress , Plant Roots/cytology , Plant Roots/genetics , Plant Roots/metabolism , Plant Shoots/cytology , Plant Shoots/genetics , Plant Shoots/metabolism , Plants, Genetically Modified , Seedlings/cytology , Seedlings/genetics , Seedlings/metabolism
9.
Plant J ; 74(2): 294-309, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23448237

ABSTRACT

A family of six genes encoding acyl-CoA-binding proteins (ACBPs), ACBP1-ACBP6, has been characterized in Arabidopsis thaliana. In this study, we demonstrate that ACBP1 promotes abscisic acid (ABA) signaling during germination and seedling development. ACBP1 was induced by ABA, and transgenic Arabidopsis ACBP1-over-expressors showed increased sensitivity to ABA during germination and seedling development, whereas the acbp1 mutant showed decreased ABA sensitivity during these processes. Subsequent RNA assays showed that ACBP1 over-production in 12-day-old seedlings up-regulated the expression of PHOSPHOLIPASE Dα1 (PLDα1) and three ABA/stress-responsive genes: ABA-RESPONSIVE ELEMENT BINDING PROTEIN1 (AREB1), RESPONSE TO DESICCATION29A (RD29A) and bHLH-TRANSCRIPTION FACTOR MYC2 (MYC2). The expression of AREB1 and PLDα1 was suppressed in the acbp1 mutant in comparison with the wild type following ABA treatment. PLDα1 has been reported to promote ABA signal transduction by producing phosphatidic acid, an important lipid messenger in ABA signaling. Using lipid profiling, seeds and 12-day-old seedlings of ACBP1-over-expressing lines were shown to accumulate more phosphatidic acid after ABA treatment, in contrast to lower phosphatidic acid in the acbp1 mutant. Bimolecular fluorescence complementation assays indicated that ACBP1 interacts with PLDα1 at the plasma membrane. Their interaction was further confirmed by yeast two-hybrid analysis. As recombinant ACBP1 binds phosphatidic acid and phosphatidylcholine, ACBP1 probably promotes PLDα1 action. Taken together, these results suggest that ACBP1 participates in ABA-mediated seed germination and seedling development.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Carrier Proteins/metabolism , Seedlings/metabolism , Abscisic Acid/pharmacology , Arabidopsis/drug effects , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Basic Helix-Loop-Helix Leucine Zipper Transcription Factors/genetics , Basic Helix-Loop-Helix Leucine Zipper Transcription Factors/metabolism , Basic-Leucine Zipper Transcription Factors/genetics , Basic-Leucine Zipper Transcription Factors/metabolism , Carrier Proteins/genetics , Germination/drug effects , Germination/genetics , Phospholipase D/genetics , Phospholipase D/metabolism , Protein Binding , Seedlings/drug effects , Seeds/drug effects , Seeds/genetics , Seeds/metabolism
10.
Planta ; 238(2): 239-45, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23743537

ABSTRACT

Protein-protein interactions are at the core of cellular interactomics and are essential for various biological functions. Since proteins commonly function as macromolecular complexes, it is important to identify their interacting partners to better understand their function and the significance in these interactions. The acyl-CoA-binding proteins (ACBPs) of eukaryotes show conservation in the presence of a lipid-binding acyl-CoA-binding domain. In Arabidopsis thaliana, four of six members from the AtACBP family possess ankyrin repeats (AtACBP1 and AtACBP2) or kelch motifs (AtACBP4 and AtACBP5), which can potentially mediate protein-protein interactions. Through yeast two-hybrid screens, a dozen putative protein partners interacting with AtACBPs have been isolated from an Arabidopsis cDNA library. Investigations in the past decade on the interaction between AtACBPs and their protein partners have revealed novel roles for AtACBPs, including functions in mediating oxidative stress responses, heavy metal tolerance and oxygen sensing. Recent progress and current questions on AtACBPs and their interactors are discussed in this review.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Diazepam Binding Inhibitor/metabolism , Gene Expression Regulation, Plant , Acyl Coenzyme A/metabolism , Ankyrin Repeat , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Diazepam Binding Inhibitor/genetics , Gene Library , Lipid Metabolism , Models, Molecular , Oxidative Stress , Oxygen/metabolism , Protein Binding , Stress, Physiological , Transcription Factors/genetics , Transcription Factors/metabolism , Two-Hybrid System Techniques
11.
Plant Cell Environ ; 36(2): 300-14, 2013 Feb.
Article in English | MEDLINE | ID: mdl-22788984

ABSTRACT

Arabidopsis thaliana acyl-CoA-binding protein 2 (ACBP2) is a stress-responsive protein that is also important in embryogenesis. Here, we assign a role for ACBP2 in abscisic acid (ABA) signalling during seed germination, seedling development and the drought response. ACBP2 was induced by ABA and drought, and transgenic Arabidopsis overexpressing ACBP2 (ACBP2-OXs) showed increased sensitivity to ABA treatment during germination and seedling development. ACBP2-OXs also displayed improved drought tolerance and ABA-mediated reactive oxygen species (ROS) production in guard cells, thereby promoting stomatal closure, reducing water loss and enhancing drought tolerance. In contrast, acbp2 mutant plants showed decreased sensitivity to ABA in root development and were more sensitive to drought stress. RNA analyses revealed that ACBP2 overexpression up-regulated the expression of Respiratory Burst Oxidase Homolog D (AtrbohD) and AtrbohF, two NAD(P)H oxidases essential for ABA-mediated ROS production, whereas the expression of Hypersensitive to ABA1 (HAB1), an important negative regulator in ABA signalling, was down-regulated. In addition, transgenic plants expressing ACBP2pro:GUS showed beta-glucuronidase (GUS) staining in guard cells, confirming a role for ACBP2 at the stomata. These observations support a positive role for ACBP2 in promoting ABA signalling in germination, seedling development and the drought response.


Subject(s)
Adaptation, Physiological , Arabidopsis Proteins/metabolism , Arabidopsis/physiology , Carrier Proteins/metabolism , Droughts , Abscisic Acid/pharmacology , Adaptation, Physiological/drug effects , Arabidopsis/drug effects , Arabidopsis/genetics , Arabidopsis/growth & development , Arabidopsis Proteins/genetics , Carrier Proteins/genetics , Gene Expression Regulation, Plant/drug effects , Germination/drug effects , Germination/genetics , Glucuronidase/metabolism , Mutation/genetics , Plant Leaves/drug effects , Plant Leaves/physiology , Plant Roots/drug effects , Plant Roots/growth & development , Plant Stomata/cytology , Plant Stomata/drug effects , Plant Stomata/physiology , Plants, Genetically Modified , RNA, Messenger/genetics , RNA, Messenger/metabolism , Reactive Oxygen Species/metabolism , Seedlings/drug effects , Seedlings/genetics , Seedlings/growth & development , Seeds/metabolism , Signal Transduction/drug effects , Signal Transduction/genetics
12.
Environ Pollut ; 324: 121372, 2023 May 01.
Article in English | MEDLINE | ID: mdl-36858104

ABSTRACT

Phytoremediation with energy crops is considered an integrated technology that provides both environment and energy benefits. Herein, the sweet sorghum cultivated on Cd-contaminated farmland (1.21 mg/kg of Cd in the soil) showed promising phytoremediation potential, and the approach for utilizing sorghum stalks was explored. Sweet sorghum bagasse with Cd contamination was pretreated with dilute acid in order to improve enzymatic saccharification and achieve Cd recovery, resulting in harmless and value-added utilization. After pretreatment, hemicelluloses were dramatically degraded, and the lignocellulosic structures were partially deconstructed with xylan removal up to 98.1%. Under the optimal condition (0.75% H2SO4), the highest total sugar yield was 0.48 g/g of raw bagasse; and nearly 98% of Cd was enriched in the liquid phase. Compared with normal biomass, Cd reduced the biomass recalcitrance and further facilitated the deconstruction of biomass under super dilute acid conditions. This work provided an example for the subsequent valorization of Cd-containing biomass and Cd recovery, which will greatly facilitate the development of phytoremediation of heavy metal contaminated soil.


Subject(s)
Cadmium , Sorghum , Cadmium/metabolism , Sorghum/chemistry , Biodegradation, Environmental , Hydrolysis , Soil , Biomass
13.
Mycologia ; 115(3): 340-356, 2023.
Article in English | MEDLINE | ID: mdl-37022672

ABSTRACT

Species in the genus Tuber are ascomycetous fungi that produce hypogeous fruiting bodies commonly called truffles. These fungi are ecologically relevant owing to the ectomycorrhizal symbiosis they establish with plants. One of the most speciose lineages within Tuber is the Rufum clade, which is widely distributed throughout Asia, Europe, and North America and is estimated to include more than 43 species. Most species in this clade have spiny spores, and many still have not been formally described. Here, we describe T. rugosum based on multigene phylogenetic analysis and its unique morphological characters. Tuber rugosum (previously designated in literature as Tuber sp. 69) has been collected throughout the Midwest, USA, and Quebec, Canada, and is an ectomycorrhizal symbiont of Quercus trees, as confirmed through morphological and molecular analyses of root tips presented here. We also present a novel method for preparing Tuber ascospores for scanning electron microscope imaging that includes feeding, digestion, and spore excretion by the slug Arion subfuscus. Following this method, spores become free from ascus and other mycelial debris that could obscure morphological traits during their passage through the snail gut while maintaining ornamentation. Finally, we report the fatty acid analysis, a fungicolous species association, and we provide an updated taxonomic key of the Rufum clade.


Subject(s)
Ascomycota , Gastropoda , Mycorrhizae , Animals , Phylogeny , Spores, Fungal , Microscopy, Electron
14.
mLife ; 2(4): 428-437, 2023 Dec.
Article in English | MEDLINE | ID: mdl-38818264

ABSTRACT

Photosynthetic microalgae like Nannochloropsis hold enormous potential as sustainable, light-driven biofactories for the production of high-value natural products such as terpenoids. Nannochloropsis oceanica is distinguished as a particularly robust host with extensive genomic and transgenic resources available. Its capacity to grow in wastewater, brackish, and sea waters, coupled with advances in microalgal metabolic engineering, genome editing, and synthetic biology, provides an excellent opportunity. In the present work, we demonstrate how N. oceanica can be engineered to produce the diterpene casbene-an important intermediate in the biosynthesis of pharmacologically relevant macrocyclic diterpenoids. Casbene accumulated after stably expressing and targeting the casbene synthase from Daphne genkwa (DgTPS1) to the algal chloroplast. The engineered strains yielded production titers of up to 0.12 mg g-1 total dry cell weight (DCW) casbene. Heterologous overexpression and chloroplast targeting of two upstream rate-limiting enzymes in the 2-C-methyl- d-erythritol 4-phosphate pathway, Coleus forskohlii 1-deoxy- d-xylulose-5-phosphate synthase and geranylgeranyl diphosphate synthase genes, further enhanced the yield of casbene to a titer up to 1.80 mg g-1 DCW. The results presented here form a basis for further development and production of complex plant diterpenoids in microalgae.

15.
Bioresour Technol ; 385: 129391, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37364649

ABSTRACT

Microalgae are promising sources of valuable bioproducts such as biofuels, food, and nutraceuticals. However, harvesting microalgae is challenging due to their small size and low biomass concentrations. To address this challenge, bio-flocculation of starchless mutants of Chlamydomonas reinhardtii (sta6/sta7) was investigated with Mortierella alpina, an oleaginous fungus with high concentrations of arachidonic acid (ARA). Triacylglycerides (TAG) reached 85 % of total lipids in sta6 and sta7 through a nitrogen regime. Scanning electron microscopy determined cell-wall attachment and extra polymeric substances (EPS) to be responsible for flocculation. An algal-fungal biomass ratio around 1:1 (three membranes) was optimal for bio-flocculation (80-85 % flocculation efficiency in 24 h). Nitrogen-deprived sta6/sta7 were flocculated with strains of M. alpina (NVP17b, NVP47, and NVP153) with aggregates exhibiting fatty acid profiles similar to C. reinhardtii, with ARA (3-10 % of total fatty acids). This study showcases M. alpina as a strong bio-flocculation candidate for microalgae and advances a mechanistic understanding of algal-fungal interaction.


Subject(s)
Chlorophyta , Mortierella , Flocculation , Fatty Acids , Arachidonic Acid , Mortierella/genetics , Nitrogen
16.
J Agric Food Chem ; 2023 Nov 02.
Article in English | MEDLINE | ID: mdl-37916838

ABSTRACT

Disease represents a major problem in sustainable agricultural development. Plants interact closely with various microorganisms during their development and in response to the prevailing environment. In particular, pathogenic microorganisms can cause plant diseases, affecting the fertility, yield, and longevity of plants. During the long coevolution of plants and their pathogens, plants have evolved both molecular pattern-triggered immunity (PTI) and effector-triggered immunity (ETI) signaling networks in order to regulate host cells in response to pathogen infestation. Additionally, in the postgenomic era, alternative splicing (AS) has become uncovered as one of the major drivers of proteome diversity, and abnormal RNA splicing is closely associated with bacterial infections. Currently, the complexity of host-bacteria interactions is a much studied area of research that has shown steady progress over the past decade. Although the development of high-throughput sequencing technologies and their application in transcriptomes have revolutionized our understanding of AS, many mechanisms related to host-bacteria interactions remain still unclear. To this end, this review summarizes the changes observed in AS during host-bacteria interactions and outlines potential therapeutics for bacterial diseases based on existing studies. In doing so, we hope to provide guidelines for plant disease management in agriculture.

17.
Tohoku J Exp Med ; 226(3): 231-41, 2012 03.
Article in English | MEDLINE | ID: mdl-22450704

ABSTRACT

Adipose tissue-derived stem cells (ADSCs) are a promising source of autologous stem cells that are used for regeneration and repair of infracted heart. However, the efficiency of their transplantation is under debate. One of the possible reasons for marginal improvement in ADSCs transplantation is the significant cell death rate of implanted cells after being grafted into injured heart. Therefore, overcoming the poor survival rate of implanted cells may improve stem cell therapy. Due to limited improvement concerning direct stem cell therapy, gene-transfer methods are used to enhance cellular cardiomyoplasty efficacy. Heme oxygenase-1 (HO-1) can provide various types of cells with protection against oxidative injury and apoptosis. However, exact effects of autologous ADSCs combined with HO-1 on cardiac performance remains unknown. In this study, rabbits were treated with ADSCs transduced with HO-1 (HO-1-ADSCs), treated with non-transduced ADSCs, or injected with phosphate buffered saline 14 days after experimental myocardial infarction was induced, when autologous ADSCs were obtained simultaneously. Four weeks after injection, echocardiography showed significant improvements for cardiac functions and left ventricular dimensions in HO-1-ADSCs-treated animals. Structural consequences of transplantation were determined by detailed histological analysis, which showed differentiation of HO-1-ADSCs to cardiomyocyte-like tissues and lumen-like structure organizations. Apart from improvement in angiogenesis and scar areas, more connexin 43-positive gap junction and greater tyrosine hydroxylase-positive cardiac sympathetic nerves sprouting were observed in the HO-1-ADSCs-treated group compared with ADSCs group. These data suggest that the transplantation of autologous ADSCs combined with HO-1 transduction is a feasible and efficacious method for improving infarcted myocardium.


Subject(s)
Adipose Tissue, White/cytology , Anterior Wall Myocardial Infarction/physiopathology , Anterior Wall Myocardial Infarction/therapy , Heme Oxygenase-1/metabolism , Mesenchymal Stem Cell Transplantation/methods , Mesenchymal Stem Cells/cytology , Ventricular Remodeling/physiology , Animals , Anterior Wall Myocardial Infarction/metabolism , Anterior Wall Myocardial Infarction/pathology , Antigens, CD/metabolism , Apoptosis/drug effects , Cell Differentiation/physiology , Cell Survival/drug effects , Connexin 43/metabolism , Coronary Vessels/surgery , DNA Fragmentation/drug effects , Endothelial Cells/cytology , Endothelial Cells/metabolism , Gap Junctions/metabolism , Gap Junctions/pathology , Heart Rate/physiology , Heme Oxygenase-1/genetics , Humans , Hydrogen Peroxide/pharmacology , Ligation , Locomotion/physiology , Male , Mesenchymal Stem Cells/drug effects , Mesenchymal Stem Cells/metabolism , Muscle, Smooth, Vascular/cytology , Muscle, Smooth, Vascular/metabolism , Myocytes, Cardiac/cytology , Myocytes, Cardiac/metabolism , Myocytes, Cardiac/pathology , Neovascularization, Physiologic/physiology , Rabbits , Reactive Oxygen Species/metabolism , Respiratory Rate/physiology , Stroke Volume/physiology , Sympathetic Nervous System/metabolism , Transduction, Genetic , Transplantation, Autologous/methods , Troponin T/metabolism , Tyrosine 3-Monooxygenase/metabolism , Ventricular Dysfunction, Left/pathology , Ventricular Dysfunction, Left/physiopathology
18.
Mol Cancer ; 10: 104, 2011 Aug 29.
Article in English | MEDLINE | ID: mdl-21871133

ABSTRACT

BACKGROUND: Multiple myeloma (MM) is a B-cell malignancy that is largely incurable and is characterized by the accumulation of malignant plasma cells in the bone marrow. Apigenin, a common flavonoid, has been reported to suppress proliferation in a wide variety of solid tumors and hematological cancers; however its mechanism is not well understood and its effect on MM cells has not been determined. RESULTS: In this study, we investigated the effects of apigenin on MM cell lines and on primary MM cells. Cell viability assays demonstrated that apigenin exhibited cytotoxicity against both MM cell lines and primary MM cells but not against normal peripheral blood mononuclear cells. Together, kinase assays, immunoprecipitation and western blot analysis showed that apigenin inhibited CK2 kinase activity, decreased phosphorylation of Cdc37, disassociated the Hsp90/Cdc37/client complex and induced the degradation of multiple kinase clients, including RIP1, Src, Raf-1, Cdk4 and AKT. By depleting these kinases, apigenin suppressed both constitutive and inducible activation of STAT3, ERK, AKT and NF-κB. The treatment also downregulated the expression of the antiapoptotic proteins Mcl-1, Bcl-2, Bcl-xL, XIAP and Survivin, which ultimately induced apoptosis in MM cells. In addition, apigenin had a greater effects in depleting Hsp90 clients when used in combination with the Hsp90 inhibitor geldanamycin and the histone deacetylase inhibitor vorinostat. CONCLUSIONS: Our results suggest that the primary mechanisms by which apigenin kill MM cells is by targeting the trinity of CK2-Cdc37-Hsp90, and this observation reveals the therapeutic potential of apigenin in treating multiple myeloma.


Subject(s)
Apigenin/pharmacology , Apoptosis/drug effects , Casein Kinase II/antagonists & inhibitors , Cell Cycle Proteins/antagonists & inhibitors , Cell Proliferation/drug effects , Chaperonins/antagonists & inhibitors , HSP90 Heat-Shock Proteins/antagonists & inhibitors , Multiple Myeloma/pathology , Antineoplastic Agents/pharmacology , Antineoplastic Agents/therapeutic use , Apigenin/therapeutic use , Casein Kinase II/genetics , Casein Kinase II/metabolism , Cell Cycle Proteins/genetics , Cell Cycle Proteins/metabolism , Cell Line, Tumor , Chaperonins/genetics , Chaperonins/metabolism , Down-Regulation/drug effects , Drug Evaluation, Preclinical , Gene Expression Regulation, Neoplastic/drug effects , HSP90 Heat-Shock Proteins/genetics , HSP90 Heat-Shock Proteins/metabolism , HeLa Cells , Humans , Molecular Targeted Therapy/methods , Multiple Myeloma/drug therapy , Multiple Myeloma/genetics , Signal Transduction/drug effects , Signal Transduction/genetics , Up-Regulation/drug effects
19.
Plant Physiol ; 152(3): 1585-97, 2010 Mar.
Article in English | MEDLINE | ID: mdl-20107029

ABSTRACT

In Arabidopsis (Arabidopsis thaliana), a family of six genes encodes acyl-coenzyme A-binding proteins (ACBPs). A member of this family, ACBP1, contains an amino-terminal transmembrane domain that targets it to the plasma membrane and the endoplasmic reticulum. To investigate ACBP1 function, ACBP1-overexpressing transgenic Arabidopsis plants were characterized using lipid analysis. ACBP1 overexpressors showed reduction in several species of diunsaturated phosphatidylcholine (PC), prompting us to investigate if they were altered in response to freezing stress. ACBP1 overexpressors demonstrated increased freezing sensitivity accompanied by a decrease in PC and an increase in phosphatidic acid (PA), while acbp1 mutant plants showed enhanced freezing tolerance associated with PC accumulation and PA reduction. We also showed binding of a recombinant eukaryotic ACBP (ACBP1) to PA, indicative of the possibility of enhanced PA interaction in ACBP1 overexpressors. Since phospholipase Dalpha1 (PLDalpha1) is a major enzyme promoting the hydrolysis of PC to PA, PLDalpha1 expression was examined and was observed to be higher in ACBP1 overexpressors than in acbp1 mutant plants. In contrast, the expression of PLDdelta, which plays a positive role in freezing tolerance, declined in the ACBP1 overexpressors but increased in acbp1 mutant plants. Given that ACBP1 is localized to the endoplasmic reticulum and plasma membrane, it may regulate the expression of PLDalpha1 and PLDdelta by maintaining a membrane-associated PA pool through its ability to bind PA. Moreover, both genotypes showed no alterations in proline and soluble sugar content or in cold-regulated (COR6.6 and COR47) gene expression, suggesting that the ACBP1-mediated response is PLD associated and is independent of osmolyte accumulation.


Subject(s)
Acclimatization/genetics , Arabidopsis Proteins/metabolism , Arabidopsis/genetics , Carrier Proteins/metabolism , Cold Temperature , Arabidopsis/metabolism , Arabidopsis Proteins/genetics , Carrier Proteins/genetics , Gene Expression Regulation, Plant , Gene Knockout Techniques , Phosphatidic Acids/metabolism , Phosphatidylcholines/metabolism , Phospholipase D/genetics , Phospholipase D/metabolism , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism
20.
Phytother Res ; 25(4): 588-96, 2011 Apr.
Article in English | MEDLINE | ID: mdl-20925133

ABSTRACT

The present study was carried out to investigate the lipid-lowering effect of luteolin by using a cell model of steatosis induced by palmitate. Incubation of HepG2 cells with palmitate markedly increased lipid accumulation (Oil Red O staining), the genes involved in lipogenesis, including fatty acid synthase (FAS) and its upstream regulator sterol regulatory element binding protein 1c (SREBP-1c), and reactive oxygen species (ROS) production. Luteolin enhanced the phosphorylation of AMP-activated protein kinase α (AMPKα) and its primary downstream targeting enzyme, acetyl-CoA carboxylase (ACC), up-regulated gene expression of carnitine palmitoyl transferase 1 (CPT-1), which is the rate-limiting enzyme in mitochondrial fatty acid ß-oxidation, and down-regulated SREBP-1c and FAS mRNA levels in the absence and presence of palmitate. In addition, luteolin significantly decreased ROS production and ameliorated lipid accumulation in HepG2 cells caused by palmitate. Furthermore, intracellular triglyceride (TG) measurement indicated that the luteolin-mediated reduction of enhanced TG caused by palmitate was blocked by pretreatment with the AMPK inhibitor, compound C. The results suggested that the lipid-lowering effect of luteolin might be partially mediated by the up-regulation of CPT-1 and down-regulation of SREBP-1c and FAS gene expression, possibly by activation of the AMPK signaling pathway, and partially might be through its antioxidative actions.


Subject(s)
AMP-Activated Protein Kinases/metabolism , Lipid Metabolism , Luteolin/pharmacology , Oxidative Stress , Carcinoma, Hepatocellular/metabolism , Carcinoma, Hepatocellular/pathology , Carnitine O-Palmitoyltransferase/genetics , Cell Line, Tumor , Down-Regulation/drug effects , Enzyme Activation , Humans , Liver Neoplasms/metabolism , Liver Neoplasms/pathology , Phosphorylation , Reactive Oxygen Species/metabolism , Sterol Regulatory Element Binding Protein 1/genetics , fas Receptor/genetics
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