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1.
J Chem Inf Model ; 53(1): 249-66, 2013 Jan 28.
Article in English | MEDLINE | ID: mdl-23205711

ABSTRACT

ThermoData Engine (TDE) is the first full-scale software implementation of the dynamic data evaluation concept, as reported in this journal. The present paper describes the first application of this concept to the evaluation of thermophysical properties for material streams involving any number of chemical components with assessment of uncertainties. The method involves construction of Redlich-Kister type equations for individual properties (excess volume, thermal conductivity, viscosity, surface tension, and excess enthalpy) and activity-coefficient models for phase equilibrium properties (vapor-liquid equilibrium). Multicomponent models are based on those for the pure-components and all binary subsystems evaluated on demand through the TDE software algorithms. Models are described in detail, and extensions to the class structure of the program are provided. Novel program features, such as ready identification of key measurements for subsystems that can reduce the combined uncertainty for a particular stream property, are described. In addition, new product-design features are described for selection of solvents for optimized crystal dissolution, separation of binary crystal mixtures, and solute extraction from a single-component solvent. Planned future developments are summarized.


Subject(s)
Physical Phenomena , Software , Temperature , Algorithms , Databases, Pharmaceutical , Drug Design , Reproducibility of Results , Solubility , Solvents/chemistry , Uncertainty , User-Computer Interface
2.
J Chem Inf Model ; 52(11): 2823-39, 2012 Nov 26.
Article in English | MEDLINE | ID: mdl-23039255

ABSTRACT

The aim of this work is to develop group-contribution(+) (GC(+)) method (combined group-contribution (GC) method and atom connectivity index (CI) method) based property models to provide reliable estimations of environment-related properties of organic chemicals together with uncertainties of estimated property values. For this purpose, a systematic methodology for property modeling and uncertainty analysis is used. The methodology includes a parameter estimation step to determine parameters of property models and an uncertainty analysis step to establish statistical information about the quality of parameter estimation, such as the parameter covariance, the standard errors in predicted properties, and the confidence intervals. For parameter estimation, large data sets of experimentally measured property values of a wide range of chemicals (hydrocarbons, oxygenated chemicals, nitrogenated chemicals, poly functional chemicals, etc.) taken from the database of the US Environmental Protection Agency (EPA) and from the database of USEtox is used. For property modeling and uncertainty analysis, the Marrero and Gani GC method and atom connectivity index method have been considered. In total, 22 environment-related properties, which include the fathead minnow 96-h LC(50), Daphnia magna 48-h LC(50), oral rat LD(50), aqueous solubility, bioconcentration factor, permissible exposure limit (OSHA-TWA), photochemical oxidation potential, global warming potential, ozone depletion potential, acidification potential, emission to urban air (carcinogenic and noncarcinogenic), emission to continental rural air (carcinogenic and noncarcinogenic), emission to continental fresh water (carcinogenic and noncarcinogenic), emission to continental seawater (carcinogenic and noncarcinogenic), emission to continental natural soil (carcinogenic and noncarcinogenic), and emission to continental agricultural soil (carcinogenic and noncarcinogenic) have been modeled and analyzed. The application of the developed property models for the estimation of environment-related properties and uncertainties of the estimated property values is highlighted through an illustrative example. The developed property models provide reliable estimates of environment-related properties needed to perform process synthesis, design, and analysis of sustainable chemical processes and allow one to evaluate the effect of uncertainties of estimated property values on the calculated performance of processes giving useful insights into quality and reliability of the design of sustainable processes.


Subject(s)
Environmental Exposure/prevention & control , Environmental Pollutants/analysis , Environmental Pollutants/toxicity , Green Chemistry Technology/statistics & numerical data , Research Design , Air/analysis , Animals , Cyprinidae , Daphnia , Databases, Chemical , Environment , Environmental Monitoring , Green Chemistry Technology/methods , Lethal Dose 50 , Proportional Hazards Models , Rats , Reproducibility of Results , Soil/analysis , Solubility
3.
Chem Soc Rev ; 39(5): 1764-79, 2010 May.
Article in English | MEDLINE | ID: mdl-20419218

ABSTRACT

Thermodynamic data are key in the understanding and design of chemical processes. Next to the experimental evaluation of such data, computational methods are valuable and sometimes indispensable tools in obtaining heats of formation and Gibbs free energies. The major toolboxes to obtain such quantities by computation are quantum mechanical methods and group contribution methods. Although a lot of progress was made over the last decade, for the majority of chemical species we are still quite a bit away from what is often referred to as chemical accuracy, i.e.'1 kcal mol(-1)'. Currently, for larger molecules the combination of group contribution methods with group additive values that are determined with the best available computational ab initio methods seems to be a viable alternative to obtain thermodynamic properties near chemical accuracy. New developments and full use of existing tools may lead to further improvements (critical review, 83 references).

4.
Annu Rev Chem Biomol Eng ; 7: 557-82, 2016 Jun 07.
Article in English | MEDLINE | ID: mdl-27088667

ABSTRACT

Design of chemicals-based products is broadly classified into those that are process centered and those that are product centered. In this article, the designs of both classes of products are reviewed from a process systems point of view; developments related to the design of the chemical product, its corresponding process, and its integration are highlighted. Although significant advances have been made in the development of systematic model-based techniques for process design (also for optimization, operation, and control), much work is needed to reach the same level for product design. Timeline diagrams illustrating key contributions in product design, process design, and integrated product-process design are presented. The search for novel, innovative, and sustainable solutions must be matched by consideration of issues related to the multidisciplinary nature of problems, the lack of data needed for model development, solution strategies that incorporate multiscale options, and reliability versus predictive power. The need for an integrated model-experiment-based design approach is discussed together with benefits of employing a systematic computer-aided framework with built-in design templates.


Subject(s)
Computer-Aided Design , Inorganic Chemicals/chemistry , Models, Chemical , Organic Chemicals/chemistry
5.
Eur J Pharm Biopharm ; 85(3 Pt B): 911-29, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23770430

ABSTRACT

This paper presents the application of uncertainty and sensitivity analysis as part of a systematic model-based process monitoring and control (PAT) system design framework for crystallization processes. For the uncertainty analysis, the Monte Carlo procedure is used to propagate input uncertainty, while for sensitivity analysis, global methods including the standardized regression coefficients (SRC) and Morris screening are used to identify the most significant parameters. The potassium dihydrogen phosphate (KDP) crystallization process is used as a case study, both in open-loop and closed-loop operation. In the uncertainty analysis, the impact on the predicted output of uncertain parameters related to the nucleation and the crystal growth model has been investigated for both a one- and two-dimensional crystal size distribution (CSD). The open-loop results show that the input uncertainties lead to significant uncertainties on the CSD, with appearance of a secondary peak due to secondary nucleation for both cases. The sensitivity analysis indicated that the most important parameters affecting the CSDs are nucleation order and growth order constants. In the proposed PAT system design (closed-loop), the target CSD variability was successfully reduced compared to the open-loop case, also when considering uncertainty in nucleation and crystal growth model parameters. The latter forms a strong indication of the robustness of the proposed PAT system design in achieving the target CSD and encourages its transfer to full-scale implementation.


Subject(s)
Crystallization , Technology, Pharmaceutical/methods , Algorithms , Chemistry, Pharmaceutical/methods , Computer Simulation , Kinetics , Models, Theoretical , Monte Carlo Method , Regression Analysis , Reproducibility of Results , Uncertainty
6.
Eur J Pharm Biopharm ; 82(2): 437-56, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22820647

ABSTRACT

A systematic framework is proposed for the design of continuous pharmaceutical manufacturing processes. Specifically, the design framework focuses on organic chemistry based, active pharmaceutical ingredient (API) synthetic processes, but could potentially be extended to biocatalytic and fermentation-based products. The method exploits the synergic combination of continuous flow technologies (e.g., microfluidic techniques) and process systems engineering (PSE) methods and tools for faster process design and increased process understanding throughout the whole drug product and process development cycle. The design framework structures the many different and challenging design problems (e.g., solvent selection, reactor design, and design of separation and purification operations), driving the user from the initial drug discovery steps--where process knowledge is very limited--toward the detailed design and analysis. Examples from the literature of PSE methods and tools applied to pharmaceutical process design and novel pharmaceutical production technologies are provided along the text, assisting in the accumulation and interpretation of process knowledge. Different criteria are suggested for the selection of batch and continuous processes so that the whole design results in low capital and operational costs as well as low environmental footprint. The design framework has been applied to the retrofit of an existing batch-wise process used by H. Lundbeck A/S to produce an API: zuclopenthixol. Some of its batch operations were successfully converted into continuous mode, obtaining higher yields that allowed a significant simplification of the whole process. The material and environmental footprint of the process--evaluated through the process mass intensity index, that is, kg of material used per kg of product--was reduced to half of its initial value, with potential for further reduction. The case-study includes reaction steps typically used by the pharmaceutical industry featuring different characteristic reaction times, as well as L-L separation and distillation-based solvent exchange steps, and thus constitutes a good example of how the design framework can be useful to efficiently design novel or already existing API manufacturing processes taking advantage of continuous processes.


Subject(s)
Drug Discovery/methods , Pharmaceutical Preparations/chemistry , Technology, Pharmaceutical/methods , Drug Industry/methods , Fermentation , Solvents/chemistry
7.
Biotechnol Prog ; 28(5): 1186-96, 2012.
Article in English | MEDLINE | ID: mdl-22736412

ABSTRACT

Effective estimation of parameters in biocatalytic reaction kinetic expressions are very important when building process models to enable evaluation of process technology options and alternative biocatalysts. The kinetic models used to describe enzyme-catalyzed reactions generally include several parameters, which are strongly correlated with each other. State-of-the-art methodologies such as nonlinear regression (using progress curves) or graphical analysis (using initial rate data, for example, the Lineweaver-Burke plot, Hanes plot or Dixon plot) often incorporate errors in the estimates and rarely lead to globally optimized parameter values. In this article, a robust methodology to estimate parameters for biocatalytic reaction kinetic expressions is proposed. The methodology determines the parameters in a systematic manner by exploiting the best features of several of the current approaches. The parameter estimation problem is decomposed into five hierarchical steps, where the solution of each of the steps becomes the input for the subsequent step to achieve the final model with the corresponding regressed parameters. The model is further used for validating its performance and determining the correlation of the parameters. The final model with the fitted parameters is able to describe both initial rate and dynamic experiments. Application of the methodology is illustrated with a case study using the ω-transaminase catalyzed synthesis of 1-phenylethylamine from acetophenone and 2-propylamine.


Subject(s)
Models, Theoretical , Transaminases/chemistry , Acetophenones/chemistry , Acetophenones/metabolism , Biocatalysis , Kinetics , Phenethylamines/chemistry , Phenethylamines/metabolism , Propylamines/chemistry , Propylamines/metabolism , Transaminases/metabolism
8.
J Phys Chem B ; 115(44): 12879-88, 2011 Nov 10.
Article in English | MEDLINE | ID: mdl-21954861

ABSTRACT

The possibility of developing a scale for solubility parameters, with the purpose of predicting the performance and aiding the selection of ILs, was evaluated. For the estimation of solubility parameters, infinite-dilution activity coefficient data were used. The results allowed the identification of a curious behavior for ILs that seem to present more than one solubility parameter, acting as polar molecules in some situations and as nonpolar molecules in others, depending on the medium. This behavior was confirmed by solubility measurements of [C(4)MIM][PF(6)] in solvent mixtures. In this work, the solubility parameters were also estimated from other properties, namely, viscosities and enthalpies of vaporization, and the relation between the various sets of solubility parameters is discussed. The results obtained suggest that, given the complexity of IL molecules and their liquid phases, a one-dimensional scale for solubility parameters that is able to characterize these fluids is not feasible.

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