Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 111
Filter
Add more filters

Country/Region as subject
Publication year range
1.
J Musculoskelet Neuronal Interact ; 10(3): 207-19, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20811145

ABSTRACT

Long-term bed-rest is used to simulate the effect of spaceflight on the human body and test different kinds of countermeasures. The 2nd Berlin BedRest Study (BBR2-2) tested the efficacy of whole-body vibration in addition to high-load resisitance exercise in preventing bone loss during bed-rest. Here we present the protocol of the study and discuss its implementation. Twenty-four male subjects underwent 60-days of six-degree head down tilt bed-rest and were randomised to an inactive control group (CTR), a high-load resistive exercise group (RE) or a high-load resistive exercise with whole-body vibration group (RVE). Subsequent to events in the course of the study (e.g. subject withdrawal), 9 subjects participated in the CTR-group, 7 in the RVE-group and 8 (7 beyond bed-rest day-30) in the RE-group. Fluid intake, urine output and axiallary temperature increased during bed-rest (p < .0001), though similarly in all groups (p > or = .17). Body weight changes differed between groups (p < .0001) with decreases in the CTR-group, marginal decreases in the RE-group and the RVE-group displaying significant decreases in body-weight beyond bed-rest day-51 only. In light of events and experiences of the current study, recommendations on various aspects of bed-rest methodology are also discussed.


Subject(s)
Bed Rest/adverse effects , Exercise Therapy/methods , Physical Fitness/physiology , Weightlessness Simulation/adverse effects , Adult , Berlin , Humans , Male , Middle Aged , Osteoporosis/etiology , Osteoporosis/physiopathology , Osteoporosis/prevention & control , Treatment Outcome , Vibration/therapeutic use , Young Adult
2.
J Mol Biol ; 305(5): 1025-33, 2001 Feb 02.
Article in English | MEDLINE | ID: mdl-11162111

ABSTRACT

The free solution mobility of four 20 bp DNA oligomers, with and without A-tracts, has been measured by capillary electrophoresis in Tris-acetate buffer, to test the hypothesis that site-specific binding of monovalent counterions can occur in the narrow minor groove of A-tract DNAs. Preferential counterion binding has been proposed to cause A-tract bending because of asymmetric charge neutralization and collapse of the helix backbone toward the minor groove. Preferential counterion binding in A-tract DNAs should be manifested by a decrease in the electrophoretic mobility observed in free solution, compared to that of non-A-tract DNAs of the same size. Of the four sequences studied here, the slowest absolute mobility, indicative of the greatest counterion binding, was observed for a 20 bp oligomer containing two runs of A3T3 in phase with the helix repeat. A 20-mer containing phased CACA sequences migrated with the fastest mobility; 20-mers containing phased A5 tracts or phased runs of T3A3 migrated with intermediate mobilities. Very similar mobility differences were observed when 1-20 mM NaCl was added to the buffer. The results suggest that preferential counterion binding occurs in A-tract DNAs, especially those containing the AnTn sequence motif.


Subject(s)
Oligodeoxyribonucleotides/genetics , Oligodeoxyribonucleotides/metabolism , Poly A/genetics , Poly A/metabolism , Sodium Chloride/metabolism , Base Sequence , Electrophoresis, Capillary , Ions/metabolism , Ions/pharmacology , Nucleic Acid Conformation/drug effects , Oligodeoxyribonucleotides/chemistry , Poly A/chemistry , Sodium Chloride/pharmacology , Solutions
3.
Neurology ; 53(1): 26-33, 1999 Jul 13.
Article in English | MEDLINE | ID: mdl-10408532

ABSTRACT

OBJECTIVE: To verify linkage to chromosome 19p13, to detect mutations in the CACNA1A gene, and to correlate genetic results to their clinical phenotypes in Italian families with familial hemiplegic migraine (FHM). BACKGROUND: FHM is an autosomal dominant disease, classified as a subtype of migraine with aura. Only a proportion of FHM patients have been associated with chromosome 19p13. Among these, four missense mutations within the CACNA1A gene in five unrelated families have been described. METHODS: A linkage study was performed in 19 patients affected by FHM from five families by studying microsatellite markers associated with the 19p13 region. All familial and seven additional sporadic patients with FHM were analyzed to search for mutations within the CACNA1A gene by applying the double gradient-denaturant gradient electrophoresis technique. RESULTS: Lod score values did not establish significantly linkage to chromosome 19. However, seven new genetic variants were detected: six were new polymorphisms. The seventh was a missense mutation present in family 1, and it was associated with a hemiplegic migraine phenotype without unconsciousness and cerebellar ataxia. Because this missense mutation is absent in the general population and cosegregates with the disease, it may be a pathologic mutation. CONCLUSIONS: Genetic heterogeneity of FHM has been shown in familial and sporadic FHM patients of Italian origin. The new missense mutation-G4644T-is associated with milder clinical features compared with typical FHM.


Subject(s)
Calcium Channels/genetics , Chromosomes, Human, Pair 19 , Hemiplegia/genetics , Migraine Disorders/genetics , Mutation, Missense , Adolescent , Adult , Amino Acid Sequence , Amino Acid Substitution , Animals , Cerebellar Ataxia , Child , Chromosome Mapping , DNA/blood , Exons , Female , Genetic Linkage , Genetic Markers , Humans , Introns , Male , Microsatellite Repeats , Middle Aged , Molecular Sequence Data , Mutagenesis, Site-Directed , Pedigree , Polymerase Chain Reaction , Rabbits , Rats , Sequence Alignment
4.
Neurology ; 53(1): 38-43, 1999 Jul 13.
Article in English | MEDLINE | ID: mdl-10408534

ABSTRACT

OBJECTIVE: To search for mutations in the calcium channel gene CACNA1A and to study the genotype-phenotype correlation in a family with a severe familial hemiplegic migraine (FHM) phenotype and a slowly progressive cerebellar ataxia. BACKGROUND: CACNA1A gene mutations on chromosome 19 are involved in approximately 50% of FHM families. The association of FHM and cerebellar ataxia has been reported in a small number of FHM families, all linked to chromosome 19. METHODS: The proband, in addition to typical hemiplegic migraine attacks, experienced severe episodes during which hemiplegia was associated with acutely altered consciousness and fever lasting several days. She, as well as her affected sister, developed a permanent, late-onset cerebellar ataxia and cerebellar atrophy evident on MRI. Linkage analysis was performed and the whole CACNA1A gene, 47 exon-intron boundaries, was analyzed by double gradient-denaturing gradient gel electrophoresis (DG-DGGE). RESULTS: Genetic studies suggested linkage to chromosome 19p13, and DG-DGGE analysis detected a heteroduplex fragment in exon 13 of the CACNA1A gene. By direct sequencing, a G-to-A substitution resulting in an arginine to glutamine change at codon 583 in the second putative voltage sensor domain of the channel alpha1A-subunit, was identified, possibly representing the disease-causing mutation. The proband and her affected sister were treated with acetazolamide, reporting freedom from new FHM attacks but no benefit in the progression of ataxia. CONCLUSIONS: The combination of episodic dysfunction and permanent deficit could depend on the variety of functions of calcium channels and their distribution in the nervous system.


Subject(s)
Acetazolamide/therapeutic use , Calcium Channels/genetics , Cerebellar Ataxia/genetics , Convulsants/therapeutic use , Hemiplegia/genetics , Migraine Disorders/genetics , Point Mutation , Adult , Aged , Amino Acid Sequence , Amino Acid Substitution , Animals , Brain/pathology , Calcium Channels/chemistry , Cerebellar Ataxia/drug therapy , Cerebellar Ataxia/pathology , Exons , Female , Hemiplegia/drug therapy , Hemiplegia/pathology , Humans , Introns , Magnetic Resonance Imaging , Male , Middle Aged , Migraine Disorders/drug therapy , Migraine Disorders/pathology , Molecular Sequence Data , Pedigree , Rabbits , Sequence Alignment , Sequence Homology, Amino Acid
5.
Biotechniques ; 22(2): 326-30, 1997 Feb.
Article in English | MEDLINE | ID: mdl-9043706

ABSTRACT

A novel technique is reported for screening point mutations is genomic DNA: double gradient, denaturing gradient gel electrophoresis (DG-DGGE). Unlike conventional DGGE, which exploits a single gradient of denaturing chemicals (typically urea and formamide) along the migration path to force the two hetero- and two homo-duplexes to partially unwind and separate, DG-DGGE superimposes a second (porous) gradient over the denaturing one. With the help of the sieving gradient, molecules such as the hetero-duplexes, which often produce curtains and smears instead of sharp zones, due to lack of a sharp melting transition, are re-compacted into remarkably narrow bands. Even homo-duplexes with minute melting temperature differences, giving a single band in DGGE, are resolved into two zones in DG-DGGE. The technique has been applied to the analysis of a number of point mutations in several exons of the cystic fibrosis transmembrane conductance regulator gene.


Subject(s)
Cystic Fibrosis Transmembrane Conductance Regulator/genetics , DNA/analysis , Electrophoresis/methods , Point Mutation , Cystic Fibrosis/genetics , DNA/chemistry , Exons , Humans , Nucleic Acid Denaturation , Sodium Dodecyl Sulfate
6.
Biotechniques ; 21(5): 926-28, 930, 932, 1996 Nov.
Article in English | MEDLINE | ID: mdl-8922636

ABSTRACT

A method for unambiguous determination of point mutations in genomic DNA, based on electrophoresis in thin capillaries, is reported here. The method is based on the principle of temperature gradient gel electrophoresis (TGGE), a variant of denaturing gradient gel electrophoresis (DGGE), and exploits the differential melting of mutant and wild-type PCR-amplified DNA fragments during electrophoresis through a temperature gradient. Unlike TGGE, where the temperature gradient exists along the separation space, the denaturing temperature gradient in the fused-silica capillaries is time-programmed, so as to reach the melting points (Tms) of all species under analysis prior to electrophoretic transport past the detector window. The DNA fragments are injected in a capillary maintained (by combined chemical and thermal means) just below the expected Tm values. The temperature increment applied is typically minute (1 degree -1.5 degrees C) and the sweep speed is rather shallow (e.g., 0.05 degree C/min). Additionally, the denaturing thermal gradient is not controlled externally, but generated internally by Joule heat produced by voltage ramps. Point mutants are fully resolved into a spectrum of four bands, with a dynamic range extending from 45 degrees C (low melters) up to 70 degrees C for high melters. The present method can thus be universally applied to any type of point mutation.


Subject(s)
DNA/analysis , Point Mutation , Electrophoresis, Capillary , Temperature
7.
Biotechniques ; 19(2): 254-8, 260-3, 1995 Aug.
Article in English | MEDLINE | ID: mdl-8527147

ABSTRACT

Duchenne (DMD) and Becker (BMD) muscular dystrophies are the two most common myopathies described so far. In the late 80s, Chamberlain et al. and Beggs et al. proposed two PCR assays allowing detection of over 98% DMD/BMD deletions. Since each of them is based on specific co-amplification of 9 dystrophin gene exons, a method attempting simultaneous analysis of DMD/BMD should offer unambiguous resolution and identification of 18 DNA fragments ranging in size from approximately 100 to 500 bp. We have developed a novel capillary electrophoresis method that allows simultaneous analysis of the two PCR sets with full diagnostic value. It consists of (a) an ultrastable inner capillary coating based on a novel acrylamide monomer (N-acryloyl amino ethoxy ethanol); (b) a very low viscosity (barely 70 mPa) sieving polymer solution, formed by short-chain (average mol wt of 230,000, 55,000 Mn) polyacrylamides; (c) substitution of four fragments in the classical multiplex reaction (181 and 535 bp in the Beggs, 416 and 459 bp in the Chamberlain) with four new fragments of different lengths (170, 313, 154 and 88 bp, respectively). These new conditions allow resolution and unambiguous identification of all 18 PCR-amplified fragments in a single electrophoretic run. The set of 18 fragments comprises the following: 88, 113, 139, 154, 170, 196, 202, 238, 268, 271, 313, 331, 357, 360, 388, 410, 506 and 547 bp.


Subject(s)
Dystrophin/genetics , Electrophoresis, Capillary/methods , Muscular Dystrophies/genetics , Polymerase Chain Reaction/methods , Acrylic Resins/chemistry , Electrophoresis, Polyacrylamide Gel/methods , Exons , Humans , Infant, Newborn , Molecular Sequence Data , Muscular Dystrophies/diagnosis , Neonatal Screening , Prenatal Diagnosis
8.
Thromb Haemost ; 62(2): 708-14, 1989 Sep 29.
Article in English | MEDLINE | ID: mdl-2530647

ABSTRACT

Four mouse hybridomas secreting monoclonal antibodies specific for human protein S (PS) have been generated. The antibodies, all of the IgG1 subclass, were designated S2, S3, S8, and S10. In a fluid phase radioimmunoassay, the binding of monoclonal antibodies to PS was about 30% greater in the presence of EDTA and totally inhibited in presence of Ca2+. Using the same technique, we performed displacement curves of 125I-labeled PS by purified PS, thrombin-cleaved PS, normal plasma, plasma from a patient on warfarin therapy, and plasma from a patient with no free PS and only PS bound to C4b-binding protein. The slopes of the curves show that the monoclonal antibodies reacted equally with all the tested forms of PS indicating that the antigenic site(s) to which the monoclonal antibodies are directed are present and exposed in free and bound PS, in thrombin-cleaved PS, and in the coumarin form of the protein. Each EDTA-dependent antibody, immobilized on Sepharose 4B-CNBr was used to purify PS from the barium citrate-absorbed, ammonium sulphate-soluble fraction of plasma. The fraction eluted from the immunoabsorbent with a buffer containing 4 mmol/l CaCl2 and analysed by SDS-PAGE, contained two bands, one migrating with conventionally purified PS and the other with purified C4b-binding protein. Homogeneous PS was obtained by chromatography of the barium citrate adsorbate on a DEAE-Sephadex column. The protein peak containing the bulk of PS was subsequently applied to the immunoadsorbent and eluted with 4 mmol/l CaCl2.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Antibodies, Monoclonal/immunology , Glycoproteins/immunology , Animals , Antibodies, Monoclonal/biosynthesis , Antigen-Antibody Reactions , Binding, Competitive , Calcium/blood , Chromatography, Affinity , Electrophoresis, Polyacrylamide Gel , Glycoproteins/isolation & purification , Humans , Immunoassay/methods , Male , Mice , Mice, Inbred BALB C , Protein C/isolation & purification , Protein Conformation , Protein S , Radioimmunoassay
9.
Thromb Haemost ; 55(2): 246-9, 1986 Apr 30.
Article in English | MEDLINE | ID: mdl-3520937

ABSTRACT

A new electrophoretic method is described for rapid screening of abnormalities of the multimeric structure of von Willebrand factor in von Willebrand's disease. The method is based on the transfer of the separated proteins from agarose gels onto nitrocellulose foils followed by immunoperoxidase staining. It has the advantage of not requiring radio-iodinated antibodies and reduces the working time for the entire procedure from 5-6 days to 3 days. Electroblotting followed by immunoperoxidase staining differentiates patients with intact multimeric structure from those without intermediate and/or large multimers. The more subtle defects of the inner structure of the smallest multimers found in patients with type II von Willebrand's disease can also be identified. A potential disadvantage of electroblotting and immunoperoxidase staining is the lesser sensitivity of this technique, which results in the detection of a smaller number of multimers (11-12 bands) than by autoradiography without transfer onto nitrocellulose (16-17 bands).


Subject(s)
Electrophoresis, Agar Gel/methods , Electrophoresis/methods , Immunoenzyme Techniques , von Willebrand Diseases/diagnosis , von Willebrand Factor/analysis , Autoradiography , Carbazoles , Chemical Phenomena , Chemistry , Collodion , Electrophoresis, Polyacrylamide Gel , Humans , Iodine Radioisotopes
10.
Thromb Haemost ; 52(3): 263-6, 1984 Dec 29.
Article in English | MEDLINE | ID: mdl-6549416

ABSTRACT

Protein C, an antithrombotic protein, was measured immunologically in 299 patients with clinical conditions associated with a high frequency of venous or arterial thromboembolism. The mean protein C antigen (PC:Ag) level was high for 48 patients with ischemic heart disease and, to a lesser extent, for 95 diabetics. In 28 patients with thrombotic strokes, 48 patients with proximal deep-vein thrombosis and in 80 patients with localized or metastatic tumors, mean PC:Ag was normal. Comparison of the pattern of changes of PC:Ag levels with those of fibrinogen, orosomucoid and prothrombin in 21 patients during the postoperative period and in 20 patients with active rheumatoid arthritis ruled out the possibility that high PC:Ag is non-specific, acute-phase reaction to inflammation, tissue injury or neoplastic growth. Therefore, high PC:Ag might be specifically related to the thrombotic tendency of these patients, but the mechanism of such a relationship remains to be clarified.


Subject(s)
Coronary Disease/blood , Diabetes Mellitus/blood , Glycoproteins/blood , Adolescent , Adult , Aged , Antigens/analysis , Female , Glycoproteins/immunology , Humans , Male , Middle Aged , Neoplasms/blood , Protein C , Thrombosis/blood
11.
Methods Mol Biol ; 3: 233-56, 1988.
Article in English | MEDLINE | ID: mdl-21400167

ABSTRACT

We will give here guidelines on the preparative aspects of immobilized pH gradients (IPGs), the latest and most powereful fractionation technique in electrophoresis. The load ability of IPG gels has been demonstrated to be at least 10 times higher than in conventional isoelectric focusing (IEF), thus approaching or even passing the load limit of isotachophoresis (1). The following aspects will be illustrated: (a) explorative runs aimed at defining the load capacity; (b) optimization of experimental parameters, such as ionic strength (I), pH gradient width, and gel thickness; (c) general considerations on the load ability and ionic strength of the milieu; (d) protein load as a function of %T in the matrix.

12.
J Chromatogr A ; 806(1): 97-112, 1998 May 08.
Article in English | MEDLINE | ID: mdl-9639883

ABSTRACT

A number of applications of capillary zone electrophoresis (CZE) in sieving liquid polymers (notably linear polyacrylamides and cellulose) for the analysis of polymerase chain reaction products of clinically relevant, diagnostic DNA, are reviewed here. The fields covered are human genetics, quantitative gene dosage, microbiology and virology, forensic medicine and therapeutic DNA (notably antisense nucleotides). Some unique, novel developments are highlighted, such as (a) non-isocratic CZE, i.e., temperature-programmed CZE for detection of DNA point mutations and (b) the synthesis of novel N-substituted acrylamides, offering extreme resistance to alkaline hydrolysis, coupled with high hydrophilicity. In the field of denaturing gradient gel electrophoresis (DGGE), as routinely performed in gel slabs, a novel methodology is described, i.e., double-gradient DGGE. In this technique, two gradients are simultaneously applied along the migration direction; a chemical denaturing gradient, for partially unwinding homo- and hetero-duplexes of DNA and a porosity gradient, for re-compacting diffuse bands melting over a broader range of denaturing conditions. Both the CZE and the slab gel methodologies, with the latest developments described in this review, appear to be promising tools for screening diagnostic DNA.


Subject(s)
DNA/analysis , Electrophoresis, Capillary/methods , Genetic Diseases, Inborn/diagnosis , Genetic Diseases, Inborn/genetics , DNA, Bacterial/analysis , DNA, Viral/analysis , Forensic Medicine , Gene Dosage , Humans
13.
J Chromatogr A ; 767(1-2): 255-62, 1997 Apr 11.
Article in English | MEDLINE | ID: mdl-9177009

ABSTRACT

A novel method is described for monitoring complex formation between macromolecules, based on combined isoelectric focusing-electrophoresis in capillaries. The example studied is the binding of serum haptoglobin (Hp) to hemoglobin (Hb). A known amount of Hb is focused in a capillary in a pH 6-8 range (pI of Hb = 7.0) and thus kept temporarily "immobilized" in the electrophoretic chamber. Subsequently, increasing amounts of ligand (Hp) are loaded cathodically and allowed to sweep past the focused Hb zone. As the complex formed has a pI value well-outside the bounds of such a pH gradient (the 1:1 molar Hb-Hp complex has a pI of 5.5, the 1 to 1/2 molar Hp-Hb complex has a pI of 5.0) it escapes immobilization and moves past the detector window, where it is monitored and quantified. Since the detector is set at 416 nm, where only Hb absorbs, and since the molar extinction coefficient of Hb is well known, it is quite easy to calculate the molar amount of Hb bound to the complex. As an additional check, the amount of unreacted Hb can now be mobilized by disrupting the pH gradient and allowing this residual free Hb to also reach the detector and be quantified. The method is easy, fast, simple and fully automated and thus could represent a valid alternative to existing methods in clinical chemistry for quantifying the amount of Hp in human sera in pathological conditions, such as hemolytic anemias and transfusion reactions.


Subject(s)
Electrophoresis, Capillary , Haptoglobins/analysis , Hemoglobins/analysis , Isoelectric Focusing , Ampholyte Mixtures , Electrophoresis, Polyacrylamide Gel , Hydrogen-Ion Concentration , Titrimetry
14.
J Chromatogr A ; 868(1): 85-99, 2000 Jan 28.
Article in English | MEDLINE | ID: mdl-10677082

ABSTRACT

A novel method is reported for quantifying protein adsorption to naked silica tubings and for assessing the efficacy of amino quenchers added to the background electrolyte. It consists of flushing a fluorescently-labelled protein (myoglobin) into a capillary equilibrated in Tris-acetate buffer, pH 5.0, until full saturation of the potential adsorbing sites. Desorption is then affected by driving electrophoretically sodium dodecyl sulphate (SDS) micelles into the capillary from the cathodic reservoir: the peak of eluted material is quantified fluorometrically by using a dual laser beam instrument able to read the fluorescein-isothiocyanate-labelled myoglobin at 520 nm and the internal standard (sulphorodamine) at 630 nm. As potential quenchers, a series of monoamines have been investigated (triethylamine, triethanolamine, ethylamine), followed by diamines (putrescine, cadaverine and hexamethonium bromide) and finally by oligoamines [spermidine, spermine and TEPA (tetraethylenepentamine), i.e., a tri- a tetra- and a pentamine, respectively]. Two values of molarities have been derived: a value at 50% (a kind of a dissociation constant) and a value at 90% inhibition of binding of macromolecules to the silica surface. According to these figures of merit, mono- and diamines are rather poor quenchers of interaction with the wall, since the 50% values are of the order of 50-100 mM and the 90% values reach as high as 560 mM. On the contrary, oligoamines, especially spermine and TEPA, are most effective, since the 50% molarities are in the sub-millimolar range and the 90% values are of the order of ca. 1 mM. Figures of merit have also been derived for different washing procedures. Those most commonly adopted in routine practice, i.e., of washing with either 1 M NaOH or with 1 M HCl, or with both, leave behind traces of proteins still bound to the wall, whereas the SDS micelle electrophoretic desorption seems to be 100% effective.


Subject(s)
Electrolytes/chemistry , Electrophoresis, Capillary , Proteins/chemistry , Quality Control , Silicon Dioxide/chemistry , Adsorption , Amines/chemistry , Electrophoresis, Capillary/methods , Fluorescein-5-isothiocyanate , Fluorescent Dyes , Hydrogen-Ion Concentration , Micelles , Myoglobin/chemistry , Sodium Dodecyl Sulfate
15.
J Chromatogr A ; 874(2): 293-303, 2000 Apr 07.
Article in English | MEDLINE | ID: mdl-10817368

ABSTRACT

A novel method is reported for quantifying protein adsorption to naked silica tubings and for assessing the efficacy of polymers added to the background electrolyte as dynamic wall modifiers. It consisted of flushing a fluorescently-labelled protein (myoglobin) into a capillary equilibrated in Tris-acetate buffer, pH 5.0, until full saturation of the potential adsorbing sites. Desorption was then affected by electrophoretically driving sodium dodecyl sulphate micelles into the capillary from the cathodic reservoir: the peak of eluted material is quantified by using a dual laser beam instrument able to read the fluorescein isothiocyanate-derivatized myoglobin at 520 nm and the internal standard (sulphorodamine) at 630 nm. Four polymers have been assessed as potential quenchers of interaction of proteins with the silica wall: hydroxypropylmethylcellulose (HPMC, Mr = 1000000), hydroxyethylcellulose (HEC, Mr = 27000), poly(vinyl alcohol) (PVA, Mr = 49000) and short-chain poly(dimethylacrylamide) [poly(DMA)] (average Mr ca. 150000). HPMC, poly(DMA) and PVA were effective in the 0.005 to 0.02% (w/v) range, whereas HEC was active in the 0.1 to 0.8% concentration range. All polymers, however, except for poly(DMA), exhibited a rather poor performance in suppressing protein interactions with the siliceous surface, and could inhibit adsorption only by, at most, 50% (contrary to oligoamines which can quench such interactions by >90%). It is hypothesized that dynamically adsorbed polymers leave ample regions of the capillary inner surface unmasked, thus allowing strong interactions of proteins with the silica wall. This is also confirmed by the modest reduction of electroendoosmotic flow upon polymer adsorption, as compared with an untreated silica surface. Although poly(DMA) can inhibit protein adsorption by as much as 85%, its hydrophobic nature could in turn provide more adsorption sites for less hydrophilic proteins than myoglobin.


Subject(s)
Electrophoresis, Capillary/methods , Proteins/analysis , Silicon Dioxide/chemistry , Adsorption , DNA/isolation & purification , Polymers/chemistry
16.
J Chromatogr A ; 838(1-2): 131-8, 1999 Apr 09.
Article in English | MEDLINE | ID: mdl-10327634

ABSTRACT

Capillary zone electrophoresis measurements in acidic isoelectric buffers provide a sensitive and rapid method for comparison of the folding and stability of wild type, mutant or post-translationally modified proteins. The potential of the method is illustrated using the small globular protein cytochrome c.


Subject(s)
Cytochrome c Group/chemistry , Electrophoresis, Capillary/methods , Protein Folding , Buffers , Drug Stability , Hydrogen-Ion Concentration , Muramidase/chemistry , Ribonucleases/chemistry
17.
J Chromatogr A ; 838(1-2): 179-89, 1999 Apr 09.
Article in English | MEDLINE | ID: mdl-10327637

ABSTRACT

The free solution electrophoretic mobility of two DNA molecules of different molecular masses, 18 base pairs and 2686 base pairs, has been measured in isoelectric histidine buffers with and without added low-molecular-mass electrolytes. Extensive DNA-histidine complex formation is observed in isoelectric histidine buffer, as evidenced by distortion and splitting of the peaks in the electropherograms. Peak distortion and splitting can be decreased or eliminated by adding low-molecular-mass neutral salts to the solution, suggesting that the DNA-histidine complexes are stabilized by electrostatic interactions. The ability of various neutral salts to disrupt the DNA-histidine complexes depends on the molecular mass of the DNA and the concentration and type of added salt.


Subject(s)
DNA/metabolism , Electrophoresis, Capillary , Histidine/metabolism , Anions , Base Pairing , Bromides , Buffers , Calcium Chloride , Cations, Divalent , DNA/chemistry , Drug Stability , Histidine/chemistry , Magnesium Chloride , Molecular Weight , Osmolar Concentration , Potassium Compounds , Sodium Chloride , Static Electricity , Sulfates
18.
J Chromatogr A ; 718(2): 405-12, 1995 Dec 22.
Article in English | MEDLINE | ID: mdl-8589822

ABSTRACT

Modern proposals for pre-natal genetic analysis of Down's syndrome consist in isolating DNA from amniotic cells and amplifying a highly polymorphic small tandem repeat region of the chromosome 21-specific D21S11 marker. The polymerase-chain-reaction-amplified fragments are typically 5'-end labelled with a green or blue fluorescent reporter and data acquisition occurs on-lane in DNA sequencing gel-slabs and equipment. The following patterns are expected: for normal individuals, 1 peak or two peaks in a 1:1 ratio. In the case of trisomy 21, the following patterns are found: either three peaks in a 1:1:1 ratio or a two-peak profile with a 2:1 gene ratio. We have developed a capillary electrophoretic system, offering precise diagnostic value by exploiting the intrinsic DNA absorbance at 254 nm. The separation occurs in capillaries coated with an extremely stable and hydrophilic layer of poly(N-acroyloyl amino ethoxy ethanol) and filled with a background electrolyte consisting of 89 mM Tris-borate, 2 mM EDTA, 2.5 microM ethidium bromide and 8% short-chain, low-viscosity, replaceable, liquid, linear, sieving polyacrylamide. The technique offers high reproducibility and precise on-line, automated peak acquisition and quantitation.


Subject(s)
Down Syndrome/diagnosis , Electrophoresis, Capillary , Gene Dosage , Prenatal Diagnosis , DNA Primers , Down Syndrome/genetics , Electrophoresis, Polyacrylamide Gel , Genetic Markers , Humans , Polymerase Chain Reaction , Spectrophotometry, Ultraviolet
19.
J Chromatogr A ; 894(1-2): 53-61, 2000 Oct 13.
Article in English | MEDLINE | ID: mdl-11100847

ABSTRACT

A novel compound ¿quaternarized piperazine [(N-methyl,N-4-iodobutyl)-N'-methylpiperazine] (QPzI)¿ for the coating of a silica capillary able to reduce or invert the electroosmotic flow (EOF) in capillary zone electrophoresis is reported. Unlike standard oligoamines (like spermine and tetraethylene pentamine) which are very efficient in quenching macromolecule interaction with the silica wall, but only in acidic pH ranges, QPzI acts all along the pH scale, including alkaline pH ranges. It is believed that QPzI behaves like a trifunctional derivative: it forms ionic bonds with dissociated silanols via its quaternary nitrogen, hydrogen bonds via its tertiary nitrogen and, most importantly, a covalent bond via alkylation of ionized silanols through the terminal iodine atom in the butyl chain. Excellent separations are obtained with a variety of organic compounds, such as aromatic carboxylic acids, tryptophan metabolites and arylalkanoic acids. Such separations could not be obtained in naked capillaries in the presence of oligoamines and on some occasions not even with capillaries coated with a covalent layer of neutral polymers. In separations taking place in alkaline media, QPzI is not added to the background electrolyte, but is used simply in the capillary pre-conditioning step, a unique feature strongly supporting the hypothesis of its covalent binding to the silica surface. In difficult separations, such as in the case of o-/p-OMe-phenylacetic acids or nicotinic/picolinic acid, which would not normally occur under standard conditions, it is believed that QPzI acts as a discriminator, thus playing an active role in the separation process, rather than simply modulating the EOF.


Subject(s)
Diamines/chemistry , Electrophoresis, Capillary/instrumentation , Silicon Dioxide/chemistry , Magnetic Resonance Spectroscopy , Osmosis
20.
J Chromatogr A ; 894(1-2): 273-80, 2000 Oct 13.
Article in English | MEDLINE | ID: mdl-11100870

ABSTRACT

Notwithstanding the use of acidic, amphoteric, isoelectric buffers with isoelectric points (pI) in the pH 2-3 range, adsorption of proteins to the naked silica wall can be non-negligible. Two such buffers have been tested: iminodiacetic acid (IDA; pI 2.23, apparent pH 3.2 in 7 M urea) and aspartic acid (pI 2.77, apparent pH 3.7 in 7 M urea). Three potential quenchers of such interactions have been tested: hydroxyethylcellulose (HEC; number average molecular mass, Mr 27,000), TEPA (tetraethylenepentamine) and a novel, quatemarized piperazine [N(methyl-N-omega-iodobutyl)-N'-methylpiperazine] (Q-Pip), either alone or in binary and ternary mixtures. Human alpha- and beta-globin chains have been used as test proteins in capillary electrophoresis separations. It has been found that mixtures of these compounds are the worst possible remedy. E.g., a ternary mixture comprising 0.5% HEC, 0.5 mM TEPA and 1 mM Q-Pip still leaves behind 4.5% adsorbed protein onto the silica surface in runs in IDA buffer and 7 M urea (pH 3.2). Conversely, 0.5 mM TEPA or 1 mM Q-Pip, when used alone, minimize adsorption down to only 1.8% and 0.5%, respectively. When the same globin chain separations are performed in Asp and 7 M urea (pH 3.7), the situation is much worse: 44% protein is adsorbed in a ternary mixture of 0.5% HEC, 1 mM Q-Pip and 0.5 mM TEPA. However, when used alone, 0.5 mM TEPA and 1 mM Q-Pip reduce globin adsorption to levels of 8% and 5%, respectively. TEPA and Q-Pip are found to be in all cases the best quenchers of protein interaction to naked fused-silica; in addition they exhibit the unique property of smoothing the base-line and giving reproducible runs. The best method for desorbing bound protein was found to be an electrophoretic step consisting in driving sodium dodecylsulphate micelles from the cathodic reservoir.


Subject(s)
Electrophoresis, Capillary , Globins/metabolism , Buffers , Humans , Isoelectric Point , Protein Binding
SELECTION OF CITATIONS
SEARCH DETAIL