ABSTRACT
The catalytic ozonation of methylethylketone (MEK) was performed at the room temperature (25 °C) using the synthesized Mn and Cu-loaded zeolite (ZSM-5, SiO2/Al2O3 = 80) catalysts. The ZSM-5 zeolite was used as a porous support material due to the large surface area and high capacity for adsorption of volatile organic compounds. Since Mn and Cu-loaded zeolite catalysts were effective for the catalytic ozonation of VOCs such as MEK, according to the loaded concentration of Mn and Cu, there are four types of metal loaded ZSM5 catalysts synthesized [5 wt% Mn/ZSM-5, 5 wt% Cu/ZSM-5, 5 wt% Mn-1 wt% Cu/ZSM-5 (5Mn1CuZSM), and 5 wt% Cu-1 wt% Mn/ZSM-5]. The catalytic efficiency for the removal of MEK and ozonation using the different catalysts was also studied. Based on various experimental analysis processes, the characteristics of the synthesized catalysts were explored and the removal efficiencies of MEK and O3 together with the COx concentration generated from the destruction of MEK and O3 were explored. The results for the decomposition of MEK and O3 at the room temperature indicated that the Mn dominant ZSM-5 catalysts showed better efficiency for the conversion of MEK and O3. The 5 wt% Mn/ZSM-5 outweighed the rest of them for the removal of MEK while the 5Mn1CuZSM showed the best catalytic reactivity for the conversion of O3 and the CO2 selectivity. It was ascertained that during the reaction time of catalyst and reactants of 120 min the Mn dominantly deposited bimetallic catalyst, 5Mn1CuZSM, was determined as the most effective for the removal of MEK and O3 due to the high capability of production of Mn3+ species and more available adsorbed oxygen sites compared to the other catalysts. Finally, the durability measurement for the 5Mn1CuZSM catalyst was performed together with the produced CO and CO2 concentration for 420 min.
Subject(s)
Ozone , Zeolites , Silicon Dioxide , Carbon Dioxide , Porosity , Mitogen-Activated Protein Kinase Kinases , CatalysisABSTRACT
A Gram-stain-negative, non-flagellated, non-gliding, aerobic and ovoid or rod-shaped bacterium, designated OITF-51T, was isolated from a tidal flat in Oido, an island of South Korea, and subjected to a polyphasic taxonomic study. Strain OITF-51T grew optimally at 30 °C, at pH 7.0-8.0 and in the presence of 2.0â% (w/v) NaCl. The neighbour-joining phylogenetic tree based on 16S rRNA gene sequences revealed that strain OITF-51T forms a cluster with the type strains of three species of the genus Flaviramulus. Strain OITF-51T exhibited 16S rRNA gene sequence similarity values of 97.0, 95.8 and 95.8â% to the type strains of Flaviramulus ichthyoenteri, Flaviramulus basaltis and Flaviramulus aquimarinus, respectively, and of less than 96.5â% to the type strains of other recognized species. Strain OITF-51T contained MK-6 as the predominant menaquinone and iso-C15â:â1 G, iso-C15â:â0, iso-C15â:â0 3-OH and iso-C17â:â0 3-OH as the major fatty acids. The major polar lipids detected in strain OITF-51T were phosphatidylethanolamine and one unidentified lipid. The DNA G+C content of strain OITF-51T was 33.4 mol%, and its mean DNA-DNA relatedness value with the type strain of F. ichthyoenteri was 13â%. Differential phenotypic properties, together with its phylogenetic and genetic distinctiveness, revealed that strain OITF-51T is separated from recognized species of the genus Flaviramulus. On the basis of the data presented, strain OITF-51T is considered to represent a novel species of the genus Flaviramulus, for which the name Flaviramulus aestuariivivens sp. nov. is proposed. The type strain is OITF-51T (=KCTC 52657T=NBRC 112707T).
Subject(s)
Flavobacteriaceae/classification , Phylogeny , Seawater/microbiology , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Flavobacteriaceae/genetics , Flavobacteriaceae/isolation & purification , Nucleic Acid Hybridization , Phosphatidylethanolamines/chemistry , RNA, Ribosomal, 16S/genetics , Republic of Korea , Sequence Analysis, DNA , Vitamin K 2/analogs & derivatives , Vitamin K 2/chemistryABSTRACT
A Gram-stain-negative, aerobic, non-motile and ovoid or rod-shaped bacterial strain, designated OITF-11T, was isolated from a tidal flat in Oido, an island of South Korea, and subjected to a polyphasic taxonomic study. Strain OITF-11T grew optimally at 25 °C, at pH 7.0-8.0 and in the presence of 2.0â% (w/v) NaCl. The phylogenetic trees based on 16S rRNA gene sequences showed that strain OITF-11T belonged to the genus Polaribacter. Strain OITF-11T exhibited 16S rRNA gene sequence similarity values of 97.4-98.1â% to Polaribacter haliotis RA4-7T, Polaribacter atrinae KACC 17473T, Polaribacter dokdonensis DSW-5T and Polaribacter marinaquae KCTC 42664T, and of 94.1-96.9â% to the type strains of the other Polaribacter species. Strain OITF-11T contained menaquinone MK-6 as the predominant menaquinone and iso-C15â:â0, iso-C15â:â1 G, iso-C15â:â0 3-OH, iso-C17â:â0 3-OH and C15â:â1ω6c as the major fatty acids. The major polar lipids detected in strain OITF-11T were phosphatidylethanolamine, phosphatidylmonomethylethanolamine and one unidentified lipid. The DNA G+C content of strain OITF-11T was 32.2 mol% and its DNA-DNA relatedness values with the type strains of P. haliotis, P. atrinae, P. dokdonensis and P. marinaquae were 14-33â%. Differential phenotypic properties, together with its phylogenetic and genetic distinctiveness, revealed that strain OITF-11T is separated from recognized species of the genus Polaribacter. On the basis of the data presented, strain OITF-11T is considered to represent a novel species of the genus Polaribacter, for which the name Polaribacter litorisediminis sp. nov. is proposed. The type strain is OITF-11T (=KCTC 52500T=NBRC 112457T).
Subject(s)
Flavobacteriaceae/classification , Phylogeny , Seawater/microbiology , Animals , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Flavobacteriaceae/genetics , Flavobacteriaceae/isolation & purification , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Republic of Korea , Sequence Analysis, DNA , Vitamin K 2/analogs & derivatives , Vitamin K 2/chemistryABSTRACT
A Gram-stain-negative, non-motile, aerobic and coccoid or rod-shaped bacterium, designated GHTF-23T, was isolated from a tidal flat of the South Sea, South Korea. GHTF-23T grew optimally at 37 °C, at pH 6.5-7.5 and in the presence of 2.0â% (w/v) NaCl. In the neighbour-joining phylogenetic tree based on 16S rRNA gene sequences, GHTF-23T fell within the clade comprising the type strains of species of the genus Microbulbifer. GHTF-23T exhibited 16S rRNA gene sequence similarities of 97.1-97.9â% to the type strains of Microbulbifer salipaludis, Microbulbifer hydrolyticus, Microbulbifer elongatus, Microbulbifer mangrovi and Microbulbifer yueqingensis and 94.5-96.8â% to the type strains of the other species of the genus Microbulbifer. GHTF-23T contained Q-8 as the predominant ubiquinone and iso-C15â:â0 and summed feature 3 (C16â:â1ω7c and/or C16â:â1ω6c) as the major fatty acids. The major polar lipids detected in GHTF-23T and M. hydrolyticus DSM 11525T were phosphatidylethanolamine, phosphatidylglycerol and one unidentified glycolipid. The DNA G+C content of GHTF-23T was 60.1 mol% and its mean DNA-DNA relatedness values with the type strains of M. salipaludis, M. hydrolyticus, M. elongatus, M. mangrovi and M. yueqingensis were 11-31â%. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that GHTF-23T is separated from species of the genus Microbulbifer with validly published names. On the basis of the data presented, GHTF-23T is considered to represent a novel species of the genus Microbulbifer, for which the name Microbulbifer aestuariivivenssp. nov. is proposed. The type strain is GHTF-23T (=KCTC 52569T=NBRC 112533T).
Subject(s)
Alteromonadaceae/classification , Geologic Sediments/microbiology , Phylogeny , Seawater/microbiology , Alteromonadaceae/genetics , Alteromonadaceae/isolation & purification , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Glycolipids/chemistry , Nucleic Acid Hybridization , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Republic of Korea , Sequence Analysis, DNA , Ubiquinone/chemistryABSTRACT
A Gram-stain-negative, non-motile, aerobic and coccoid, ovoid or rod-shaped bacterium, designated GHTF-24T, was isolated from a tidal flat on the South Sea, South Korea, and subjected to polyphasic taxonomic study. The novel strain grew optimally at 30 °C, at pH 7.0-8.0 and in the presence of 2.0-3.0 % (w/v) NaCl. In the neighbour-joining phylogenetic tree based on 16S rRNA gene sequences, strain GHTF-24T fell within the clade comprising the type strains of species of the genus Roseovarius. Strain GHTF-24T exhibited 16S rRNA gene sequence similarity values of 97.0 % to each of Roseovariushalotolerans HJ50T and Roseovariuspacificus 81-2T and of 91.6-96.5 % to the type strains of the other species of the genus Roseovarius. Strain GHTF-24T contained Q-10 as the predominant ubiquinone and C18 : 1ω7c as the major fatty acid. The major polar lipids of strain GHTF-24T were phosphatidylcholine, phosphatidylglycerol, diphosphatidylglycerol, one unidentified aminolipid and one unidentified lipid. The DNA G+C content of strain GHTF-24T was 62.3 mol%, and its mean DNA-DNA relatedness values with the type strains of R. halotolerans and R.pacificus were 13-16 %. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain GHTF-24T is separated from other recognized species of the genus Roseovarius. On the basis of the data presented, strain GHTF-24T is considered to represent a novel species of the genus Roseovarius, for which the name Roseovarius aestuariivivens sp. nov. is proposed. The type strain is GHTF-24T (=KCTC 52454T=NBRC 112420T).
Subject(s)
Phylogeny , Rhodobacteraceae/classification , Seawater/microbiology , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Nucleic Acid Hybridization , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Republic of Korea , Rhodobacteraceae/genetics , Rhodobacteraceae/isolation & purification , Sequence Analysis, DNA , Ubiquinone/analogs & derivatives , Ubiquinone/chemistryABSTRACT
A Gram-stain-negative, non-motile, aerobic and rod-shaped bacterium, designated OITF-20T, was isolated from the tidal flat in Oido, an island of South Korea. The novel strain grew optimally at 25 °C, at pH 7.0-8.0 and in the presence of 1.0-2.0â% (w/v) NaCl. In the neighbour-joining phylogenetic tree based on 16S rRNA gene sequences, strain OITF-20T fell within the clade comprising the type strains of species of the genus Lutibacter. Strain OITF-20T exhibited 16S rRNA gene sequence similarity values of 97.8, 97.6 and 97.6â% to the type strains of Lutibactercrassostreae, Lutibacterflavus and Lutibacterlitoralis, respectively, of 94.9-96.8â% to the type strains of the other species of the genus Lutibacter and of less than 93.4â% to the type strains of the other recognized species. Strain OITF-20T contained MK-6 as the predominant menaquinone and iso-C15â:â0 3-OH, C15â:â1ω6c and iso-C15â:â0 as the major fatty acids. The major polar lipids of strain OITF-20T were phosphatidylethanolamine and one unidentified lipid. The DNA G+C content of strain OITF-20T was 31.1 mol% and its mean DNA-DNA relatedness values with the type strains of L. crassostreae, L. flavus and L. litoralis were 17-27â%. The differential phenotypic properties, together with phylogenetic and genetic distinctiveness, revealed that strain OITF-20T is separated from other recognized species of the genus Lutibacter. On the basis of the data presented, strain OITF-20T is considered to represent a novel species of the genus Lutibacter, for which the name Lutibacter litorisediminis sp. nov. is proposed. The type strain is OITF-20T (=KCTC 52501T=NBRC 112458T).
Subject(s)
Flavobacteriaceae/classification , Geologic Sediments/microbiology , Phylogeny , Seawater/microbiology , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Flavobacteriaceae/genetics , Flavobacteriaceae/isolation & purification , Phosphatidylethanolamines/chemistry , RNA, Ribosomal, 16S/genetics , Republic of Korea , Sequence Analysis, DNA , Vitamin K 2/analogs & derivatives , Vitamin K 2/chemistryABSTRACT
A Gram-stain-negative, non-flagellated, non-gliding, aerobic and rod-shaped bacterium, designated strain OITF-31T, was isolated from a tidal flat in Oido, an island of South Korea, and subjected to a polyphasic taxonomic study. Strain OITF-31T grew optimally at 30 °C, at pH 7.0-8.0 and in the presence of 1.0-2.0â% (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain OITF-31T belonged to the genus Nonlabens, clustering with the type strains of Nonlabens dokdonensis and Nonlabens xylanidelens, sharing 98.1â% sequence similarity with each. Strain OITF-31T exhibited 16S rRNA gene sequence similarities of 93.9-95.8â% to the type strains of other Nonlabens species and less than of 91.8â% to the type strains of other recognized species. Strain OITF-31T contained MK-6 as the predominant menaquinone and iso-C17â:â0 3-OH and iso-C15â:â0 as the major fatty acids. The major polar lipids detected in strain OITF-31T were phosphatidylethanolamine, six unidentified lipids and two unidentified aminolipids. The DNA G+C content of strain OITF-31T was 38.1 mol% and its mean DNA-DNA relatedness values with the type strains of N. dokdonensis and N. xylanidelens were 24 and 19â%, respectively. Differential phenotypic properties, together with its phylogenetic and genetic distinctiveness, revealed that strain OITF-31T is separated from recognized species of the genus Nonlabens. On the basis of the data presented, strain OITF-31T is considered to represent a novel species of the genus Nonlabens, for which the name Nonlabens aestuariivivens sp. nov. is proposed. The type strain is OITF-31T (=KCTC 52502T=NBRC 112459T).
Subject(s)
Flavobacteriaceae/classification , Phylogeny , Seawater/microbiology , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Flavobacteriaceae/genetics , Flavobacteriaceae/isolation & purification , Nucleic Acid Hybridization , Phosphatidylethanolamines/chemistry , RNA, Ribosomal, 16S/genetics , Republic of Korea , Sequence Analysis, DNA , Vitamin K 2/analogs & derivatives , Vitamin K 2/chemistryABSTRACT
A Gram-stain-negative, non-flagellated, aerobic and coccoid, ovoid or rod-shaped bacterium, designated YSM-17T, was isolated from tidal flat sediment collected from the South Sea, South Korea, and subjected to a polyphasic taxonomic study. The novel strain grew optimally at 30 °C, at pH 6.5-8.0 and in the presence of 2.0-3.0 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences showed that strain YSM-17T forms a distinct evolutionary lineage independent of other taxa in the family Rhodobacteraceae. Strain YSM-17T exhibited 16S rRNA gene sequence similarity values of 96.8 and 96.6 % to the type strains of Pseudopelagicola gijangensis and Pelagicola litoralis, respectively, and of less than 96.5 % to the type strains of other recognized taxa. Strain YSM-17T contained Q-10 as the predominant ubiquinone and C18 : 1ω7c as the major fatty acid. The major polar lipids detected in strain YSM-17T were phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and one unidentified aminolipid. The fatty acid and polar lipid profiles of strain YSM-17T were distinguished from those of the genera Pseudopelagicola and Pelagicola. The DNA G+C content of strain YSM-17T was 64.6±0.04 mol%. On the basis of the phylogenetic, chemotaxonomic and other phenotypic properties, strain YSM-17T is considered to represent a novel species of a new genus within the family Rhodobacteraceae, for which the name Litorisediminivivensgilvus gen. nov., sp. nov., is proposed. The type strain of Litorisediminivivensgilvus is YSM-17T (=KCTC 52249T=NBRC 112330T).
Subject(s)
Phylogeny , Rhodobacteraceae/classification , Seawater/microbiology , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Republic of Korea , Rhodobacteraceae/genetics , Rhodobacteraceae/isolation & purification , Sequence Analysis, DNA , Ubiquinone/analogs & derivatives , Ubiquinone/chemistryABSTRACT
A Gram-stain-negative, aerobic, non-spore-forming, motile and coccoid, ovoid or rod-shaped bacterial strain, designated OITF-36T, was isolated from a tidal flat in Oido, an island of South Korea, and subjected to a polyphasic taxonomic study. Strain OITF-36T grew optimally at 30 °C, at pH 7.0-8.0 and in the presence of 2.0-3.0 % (w/v) NaCl. Neighbour-joining and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences revealed that strain OITF-36T clustered with the type strains of Primorskyibactersedentarius and Primorskyibacter insulae, showing 97.4-97.6 % sequence similarity. It exhibited sequence similarity values of less than 96.9 % to the type strains of the other recognized species. Strain OITF-36T contained Q-10 as the predominant ubiquinone and C18 : 1ω7c as the major fatty acid. The major polar lipids detected in strain OITF-36T were phosphatidylcholine, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylmonomethylethanolamine, one unidentified aminolipid and one unidentified lipid. The DNA G+C content of strain OITF-36T was 61.8 mol%, and its mean DNA-DNA relatedness values with the type strains of P. sedentarius and P. insulae were 16-24 %. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain OITF-36T is separate from P. sedentarius and P. insulae. On the basis of the data presented, strain OITF-36T is considered to represent a novel species of the genus Primorskyibacter, for which the name Primorskyibacteraestuariivivens sp. nov. is proposed. The type strain is OITF-36T (=KCTC 52455T=NBRC 112419T).
Subject(s)
Phylogeny , Rhodobacteraceae/classification , Seawater/microbiology , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Nucleic Acid Hybridization , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Republic of Korea , Rhodobacteraceae/genetics , Rhodobacteraceae/isolation & purification , Sequence Analysis, DNA , Ubiquinone/analogs & derivatives , Ubiquinone/chemistryABSTRACT
A Gram-stain-negative, non-flagellated, non-gliding and rod-shaped bacterial strain, designated TM-6T, was isolated from a tidal flat sediment in the Korean peninsula. Strain TM-6T was found to grow optimally at pH 7.0-8.0, at 30 °C and in the presence of 2-3% (w/v) NaCl. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain TM-6T joined the clade comprising recognized species of the genus Fulvivirga, with which it exhibited 94.7- 95.2 % sequence similarity. Strain TM-6T was found to contain iso-C15 : 0, iso-C15 : 1 G and iso-C17 : 0 3-OH as major fatty acids. The only isoprenoid quinone was menaquinone-7 (MK-7). The major polar lipids were identified as phosphatidylethanolamine and three unidentified lipids. The DNA G+C content of strain TM-6T was 50.9 mol%. Differential phenotypic properties, together with the phylogenetic distinctiveness, revealed that strain TM-6T is distinguishable from recognized Fulvivirgaspecies. On the basis of the data presented, strain TM-6T is proposed to represent a novel species of the genus Fulvivirga, for which the name Fulvivirga lutimaris sp. nov. is proposed. The type strain is TM-6T (=KCTC 42720T=CECT 9024T).
Subject(s)
Bacteroidetes/classification , Geologic Sediments/microbiology , Phylogeny , Seawater/microbiology , Bacterial Typing Techniques , Bacteroidetes/genetics , Bacteroidetes/isolation & purification , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Nucleic Acid Hybridization , Phosphatidylethanolamines/chemistry , RNA, Ribosomal, 16S/genetics , Republic of Korea , Sequence Analysis, DNA , Vitamin K 2/analogs & derivatives , Vitamin K 2/chemistryABSTRACT
A Gram-stain-negative, non-flagellated, non-gliding, non-spore-forming bacterial strain, designated YKTF-3T, was isolated from a tidal flat on the Yellow Sea, South Korea. Strain YKTF-3T grew optimally at 30 °C and in the presence of 2.0-4.0 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences showed that strain YKTF-3T fell within the clade comprising the type strains of Tenacibaculumspecies. The novel strain exhibited 16S rRNA gene sequence similarity values of 97.22-98.34 % to the type strains of Tenacibaculum gallaicum, Tenacibaculum ascidiaceicola, Tenacibaculum litoreum, Tenacibaculum discolor, Tenacibaculum aestuarii and Tenacibaculum lutimaris, and of 95.08-96.95 % to the type strains of the other Tenacibaculum species. Strain YKTF-3T contained MK-6 as the predominant menaquinone and iso-C15 : 0, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) and iso-C17 : 0 3-OH as the major fatty acids. The major polar lipids of strain YKTF-3T were phosphatidylethanolamine, one unidentified lipid, one unidentified aminophospholipid, one unidentified glycolipid and one unidentified aminolipid. The DNA G+C content was 32.3 mol% and its mean DNA-DNA relatedness values with the type strains of the six phylogenetically closely relatedTenacibaculum species were 10-27 %. Differential phenotypic properties, together with phylogenetic and genetic distinctiveness, revealed that strain YKTF-3T is separate from other recognized species of the genus Tenacibaculum. On the basis of the data presented, strain YKTF-3T is considered to represent a novel species of the genus Tenacibaculum, for which the name Tenacibaculum sediminilitoris sp. nov. is proposed. The type strain is YKTF-3T (=KCTC 52210T=NBRC 111991T).
Subject(s)
Geologic Sediments/microbiology , Seawater/microbiology , Tenacibaculum/classification , Tenacibaculum/isolation & purification , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/analysis , Phylogeny , RNA, Ribosomal, 16S/genetics , Republic of Korea , Sequence Analysis, DNA , Tenacibaculum/chemistry , Tenacibaculum/genetics , Vitamin K 2/analysisABSTRACT
A Gram-stain-negative, non-flagellated, non-gliding, aerobic and rod-shaped bacterium, designated strain OITF-19T, was isolated from a tidal flat in Oido, an island of South Korea, and subjected to a polyphasic taxonomic study. Strain OITF-19T grew optimally at 30 °C, at pH 7.0-8.0 and in the presence of 2.0 % (w/v) NaCl. The neighbour-joining phylogenetic tree based on 16S rRNA gene sequences revealed that strain OITF-19T belonged to the genus Algoriphagus, clustering with the type strain of Algoriphagus namhaensis, with which it shared 96.5 % sequence similarity. Strain OITF-19T exhibited the highest 16S rRNA gene sequence similarity to Algoriphagus chungangensis CAU 1002T (97.0 %) and of 92.0-96.8 % to the type strains of other Algoriphagus species. Strain OITF-19T contained MK-7 as the predominant menaquinone and summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), iso-C15 : 0 and iso-C17 : 0 3-OH as the major fatty acids. The major polar lipids detected in strain OITF-19T were phosphatidylcholine, phosphatidylethanolamine and three unidentified lipids. The DNA G+C content of strain OITF-19T was 38.3 mol%. Mean DNA-DNA relatedness between strain OITF-19T and the type strain of A. chungangensis was 26 %. Differential phenotypic properties, together with its phylogenetic and genetic distinctiveness, revealed that strain OITF-19T is separated from recognized species of the genus Algoriphagus. On the basis of the data presented, strain OITF-19T is considered to represent a novel species of the genus Algoriphagus, for which the name Algoriphagus litorisediminis sp. nov. is proposed. The type strain is OITF-19T (=KCTC 52456T=NBRC 112418T).
Subject(s)
Bacteroidetes/classification , Geologic Sediments/microbiology , Phylogeny , Seawater/microbiology , Bacterial Typing Techniques , Bacteroidetes/genetics , Bacteroidetes/isolation & purification , DNA, Bacterial/genetics , Fatty Acids/chemistry , Nucleic Acid Hybridization , Phosphatidylcholines/chemistry , Phosphatidylethanolamines/chemistry , RNA, Ribosomal, 16S/genetics , Republic of Korea , Sequence Analysis, DNA , Vitamin K 2/analogs & derivatives , Vitamin K 2/chemistryABSTRACT
We aimed to quantitatively analyze the corneal endothelial cell damage by measuring the area stained with trypan blue dye, and to confirm the degree of corneal endothelial cell damage resulting from enucleation, corneal buttoning, and storage in donor corneas intended for use in human corneal transplantation. This study was a retrospective analysis of medical records and videos recorded during keratoplasty. Twenty-one corneal buttons of 21 donors that underwent endothelial cell staining using trypan blue for the donor preparation during DALK or DMEK were included in the study. The percentage of stained area in entire corneal endothelia and the percentage of the stained area in the 8-mm diameter circle were quantitatively analyzed using Adobe Photoshop. The mean percentage of the stained area in the entire corneal endothelia in 13 corneas was 8.1â ±â 13.3% (range, 0.0-56.1%), and the mean percentage of the stained area in a circle with a diameter of 8 mm in 21 corneas was 3.4â ±â 5.2% (range, 0.0-18.9%). The correlations between the death-to-preservation time, the training duration of the residents who performed donor corneal buttoning, and the percentage of the stained area in the 8-mm diameter circle were not significant(Pâ =â .441, Pâ =â .495, respectively). Cornea thickness and endothelial cell density did not differ between 10 eyes in the group with the percentage of the stained area in a circle with a diameter of 8 mm <5% and 5 eyes in the group with the percentage more than 5% damage (Pâ =â .854, Pâ =â .358). The corneal endothelial cell damage could be quantitatively analyzed using trypan blue staining before keratoplasty in donor cornea. The amount of corneal endothelial cell damage in the central 8-mm circle was mostly acceptable, but some cases showed significantly severe endothelial cell damage. The corneal thickness and endothelial cell density did not differ between 10 eyes in the group with the percentage of the stained area in a circle with a diameter of 8 mm <5% and 5 eyes in the group with the percentage more than 5% damage. Therefore, pachymetry and specular microscopy are not sufficient for evaluating donor corneas before keratoplasty.
Subject(s)
Corneal Endothelial Cell Loss , Trypan Blue , Cornea/surgery , Endothelial Cells , Humans , Retrospective Studies , Staining and LabelingABSTRACT
PURPOSE: To determine whether the cornea remodeling-related genes aldehyde dehydrogenase 3A1 (ALDH3A1), lysyl oxidase (LOX), and secreted protein acidic and rich in cysteine (SPARC) were potential susceptibility candidate genes for keratoconus in Korean patients, we investigated the associations of single nucleotide polymorphisms (SNPs) in these three genes in Korean patients with keratoconus. METHODS: Genomic DNA was extracted from blood samples of unrelated patients with keratoconus and healthy control individuals. For screening of genetic variations, all exons from the entire coding regions of the ALDH3A1, LOX, and SPARC genes were directly sequenced to determine the presence of mutations. Control individuals were selected from the general population without keratoconus. RESULTS: In this study, we detected nine SNPs in ALDH3A1, four SNPs in LOX, and 18 SNPs in SPARC. rs116992290, IVS3-62c>t, rs116962241, and rs2228100 in ALDH3A1 and rs2956540 and rs1800449 in LOX were significantly different between patient and control groups. In the SPARC gene, the distribution of the *G allele of EX10+225 T>G (p = 0.018; odds ratio, 1.869) was strongly associated with the risk of keratoconus in the Korean population. In haplotype analysis, C-G of rs2956540-rs2288393 in LOX(p = 0.046) and C-C-G and G-G-G of rs60610024-rs2228100-rs57555435 (p = 0.021 and p < 0.001), G-A of IVS3-62 a>g - rs116962241 in ALDH3A1(p = 0.048) predisposed significantly to keratoconus. After cross-validation consistency and permutation tests, two locus model was the best SNP variations interaction pattern. CONCLUSIONS: Our results suggested that genetic variations in ALDH3A1, LOX, and SPARC genes were associated with a predisposition for keratoconus in Korean individuals. Moreover, variations in ALDH3A1 and LOX may serve as strong biomarkers for keratoconus.
Subject(s)
Keratoconus , Protein-Lysine 6-Oxidase , Aldehyde Dehydrogenase/genetics , Cornea/metabolism , Genetic Predisposition to Disease , Humans , Keratoconus/diagnosis , Keratoconus/genetics , Osteonectin/genetics , Protein-Lysine 6-Oxidase/genetics , Protein-Lysine 6-Oxidase/metabolism , Republic of Korea/epidemiologyABSTRACT
The relationships between changes in choroidal vasculature and the severity of diabetic retinopathy (DR) remain unclear. We assessed choroidal changes in diabetic patients by measuring choroidal vascularity index (CVI) in conjunction with DR stage. In this study, patients with diabetes and healthy controls were retrospectively analyzed. Subjects were divided into seven groups as follows: Healthy controls, no DR, mild/moderate non-proliferative DR (NPDR), severe NPDR, proliferative DR (PDR), panretinal photocoagulation-treated DR, and clinically significant macular edema. The mean CVI values in the above groups were 69.08, 67.07, 66.28, 66.20, 63.48, 65.38, and 66.28, respectively. The eyes of diabetic patients exhibited a significantly lower CVI value than those of healthy controls even without DR. The PDR group exhibited a significantly lower CVI value than the healthy control, no DR, and mild/moderate NPDR groups. Age, sex, disease duration, glycated hemoglobin, fasting blood sugar, or intraocular pressure had no correlation with CVI. In multivariate regression analysis, thicker subfoveal choroid and thinner central retina were significantly associated with higher CVI values. These findings carefully suggest that changes in choroidal vasculature could be the primary event in diabetes even where there is no DR.
Subject(s)
Choroid/diagnostic imaging , Choroid/pathology , Diabetes Mellitus, Type 2/complications , Diabetes Mellitus, Type 2/pathology , Neovascularization, Pathologic/diagnosis , Neovascularization, Pathologic/etiology , Tomography, Optical Coherence , Aged , Choroid/blood supply , Diabetic Retinopathy/diagnosis , Diabetic Retinopathy/pathology , Female , Humans , Male , Middle Aged , Severity of Illness IndexABSTRACT
A Gram-stain-negative, aerobic, non-flagellated, and coccoid, ovoid or rod-shaped bacterium, designated JDTF-65T, was isolated from a tidal flat on the south-western sea in Republic of Korea. Strain JDTF-65T grew optimally at 25°C, at pH 7.0-8.0 and in the presence of 2.0% (w/v) NaCl. Strain JDTF-65T exhibited 16S rRNA gene sequence similarities of 97.1-97.6% to the type strains of 'Aliisedimentitalea scapharcae', Phaeobacter gallaeciensis, Phaeobacter inhibens, Leisingera aquimarina, Tropicibacter litoreus, Sulfitobacter pseudonitzschiae, and Pseudoseohaeicola caenipelagi. Phylogenetic trees based on 16S rRNA gene sequences showed that strain JDTF-65T forms an independent lineage within the radiation enclosed by the family Rhodobacteraceae. Strain JDTF-65T contained Q-10 as the predominant ubiquinone and C18:1 ω7c as the major fatty acid. The major polar lipids of strain JDTF-65T were phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, one unidentified aminolipid, and one unidentified lipid. The DNA G+C content of strain JDTF-65T was 56.8 mol% and its DNA-DNA relatedness values with the type strains of the phylogenetically related species were 13-27%. Differential phenotypic properties revealed that strain JDTF-65T is separated from representatives of some phylogenetically related taxa. On the basis of the data presented, strain JDTF-65T represents a new genus and species within the family Rhodobacteraceae, for which the name Jindonia aestuariivivens gen. nov., sp. nov. is proposed. The type strain of Jindonia aestuariivivens is JDTF-65T (=KCTC 52564T =NBRC 112534T).
Subject(s)
Geologic Sediments/microbiology , Rhodobacteraceae , Seawater/microbiology , Bacterial Typing Techniques , Base Composition/genetics , DNA, Bacterial/genetics , Fatty Acids/analysis , RNA, Ribosomal, 16S/genetics , Republic of Korea , Rhodobacteraceae/classification , Rhodobacteraceae/genetics , Rhodobacteraceae/isolation & purification , Sequence Analysis, DNAABSTRACT
BACKGROUND: To investigate large cup-to-disc ratios (CDR) in children and to determine the relationship between parental CDR and clinical characteristics associated with glaucoma. METHODS: Two hundred thirty six children aged 6 to 12 years with CDR ≥ 0.6 were enrolled in this study. Subjects were classified into two groups based on parental CDR: disc suspect children with disc suspect (CDR ≥0.6) parents and disc suspect children without disc suspect parents. Ocular variables were compared between the two groups. RESULTS: Of the 236 disc suspect children, 100 (42.4%) had at least one disc suspect parent. Intraocular pressure (IOP) was higher in disc suspect children with disc suspect parents (16.52±2.66 mmHg) than in disc suspect children without disc suspect parents (14.38±2.30 mmHg, p = 0.023). In the group with disc suspect parents, vertical CDR significantly correlated with IOP (R = -0.325, p = 0.001), average retinal nerve fiber layer (RNFL) thickness (R = -0.319, p = 0.001), rim area (R = -0.740, p = 0.001), and cup volume (R = 0.499, p = 0.001). However, spherical equivalent (R = 0.333, p = 0.001), AL (R = -0.223, p = 0.009), and disc area (R = 0.325, p = 0.001) significantly correlated with vertical CDR in disc suspect children without disc suspect parents, in contrast to those with disc suspect parents. Larger vertical CDR was associated with the presence of disc suspect parents (p = 0.001), larger disc area (p = 0.001), thinner rim area (p = 0.001), larger average CDR (p = 0.001), and larger cup volume (p = 0.021). CONCLUSIONS AND RELEVANCE: Family history of large CDR was a significant factor associated with large vertical CDR in children. In children with disc suspect parents, there were significant correlations between IOP and average RNFL thickness and vertical CDR.