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1.
Cell ; 166(1): 222-33, 2016 Jun 30.
Article in English | MEDLINE | ID: mdl-27264605

ABSTRACT

How mechanical and biological processes are coordinated across cells, tissues, and organs to produce complex traits is a key question in biology. Cardamine hirsuta, a relative of Arabidopsis thaliana, uses an explosive mechanism to disperse its seeds. We show that this trait evolved through morphomechanical innovations at different spatial scales. At the organ scale, tension within the fruit wall generates the elastic energy required for explosion. This tension is produced by differential contraction of fruit wall tissues through an active mechanism involving turgor pressure, cell geometry, and wall properties of the epidermis. Explosive release of this tension is controlled at the cellular scale by asymmetric lignin deposition within endocarp b cells-a striking pattern that is strictly associated with explosive pod shatter across the Brassicaceae plant family. By bridging these different scales, we present an integrated mechanism for explosive seed dispersal that links evolutionary novelty with complex trait innovation. VIDEO ABSTRACT.


Subject(s)
Cardamine/cytology , Cardamine/physiology , Seed Dispersal , Arabidopsis , Biological Evolution , Biomechanical Phenomena , Cardamine/genetics , Cell Wall/physiology , Fruit/cytology , Fruit/physiology , Lignin/chemistry , Lignin/metabolism , Models, Biological
2.
Genes Dev ; 32(21-22): 1361-1366, 2018 11 01.
Article in English | MEDLINE | ID: mdl-30366902

ABSTRACT

How the interplay between cell- and tissue-level processes produces correctly proportioned organs is a key problem in biology. In plants, the relative size of leaves compared with their lateral appendages, called stipules, varies tremendously throughout development and evolution, yet relevant mechanisms remain unknown. Here we use genetics, live imaging, and modeling to show that in Arabidopsis leaves, the LATE MERISTEM IDENTITY1 (LMI1) homeodomain protein regulates stipule proportions via an endoreduplication-dependent trade-off that limits tissue size despite increasing cell growth. LM1 acts through directly activating the conserved mitosis blocker WEE1, which is sufficient to bypass the LMI1 requirement for leaf proportionality.


Subject(s)
Arabidopsis Proteins/physiology , Endoreduplication , Homeodomain Proteins/physiology , Transcription Factors/physiology , Arabidopsis/anatomy & histology , Arabidopsis/genetics , Arabidopsis/growth & development , Arabidopsis/metabolism , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Homeodomain Proteins/genetics , Homeodomain Proteins/metabolism , Plant Leaves/anatomy & histology , Plant Leaves/growth & development , Plant Leaves/metabolism , Plant Leaves/ultrastructure , Protein Serine-Threonine Kinases/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism
3.
Proc Natl Acad Sci U S A ; 119(24): e2202287119, 2022 06 14.
Article in English | MEDLINE | ID: mdl-35666865

ABSTRACT

Exploding seed pods evolved in the Arabidopsis relative Cardamine hirsuta via morphomechanical innovations that allow the storage and rapid release of elastic energy. Asymmetric lignin deposition within endocarpb cell walls is one such innovation that is required for explosive seed dispersal and evolved in association with the trait. However, the genetic control of this novel lignin pattern is unknown. Here, we identify three lignin-polymerizing laccases, LAC4, 11, and 17, that precisely colocalize with, and are redundantly required for, asymmetric lignification of endocarpb cells. By screening for C. hirsuta mutants with less lignified fruit valves, we found that loss of function of the transcription factor gene SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE 7 (SPL7) caused a reduction in endocarpb cell-wall lignification and a consequent reduction in seed dispersal range. SPL7 is a conserved regulator of copper homeostasis and is both necessary and sufficient for copper to accumulate in the fruit. Laccases are copper-requiring enzymes. We discovered that laccase activity in endocarpb cell walls depends on the SPL7 pathway to acclimate to copper deficiency and provide sufficient copper for lignin polymerization. Hence, SPL7 links mineral nutrition to efficient dispersal of the next generation.


Subject(s)
Arabidopsis Proteins , Arabidopsis , Seed Dispersal , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Copper , DNA-Binding Proteins/genetics , Laccase/genetics , Lignin , Transcription Factors/genetics
4.
Plant Physiol ; 190(1): 31-43, 2022 08 29.
Article in English | MEDLINE | ID: mdl-35642915

ABSTRACT

Different patterns of lignified cell walls are associated with diverse functions in a variety of plant tissues. These functions rely on the stiffness and hydrophobicity that lignin polymers impart to the cell wall. The precise pattern of subcellular lignin deposition is critical for the structure-function relationship in each lignified cell type. Here, we describe the role of xylem vessels as water pipes, Casparian strips as apoplastic barriers, and the role of asymmetrically lignified endocarp b cells in exploding seed pods. We highlight similarities and differences in the genetic mechanisms underpinning local lignin deposition in these diverse cell types. By bringing together examples from different developmental contexts and different plant species, we propose that comparative approaches can benefit our understanding of lignin patterning mechanisms.


Subject(s)
Cell Wall , Lignin , Cell Wall/metabolism , Lignin/metabolism , Plants/metabolism , Xylem/metabolism
5.
Genes Dev ; 29(22): 2391-404, 2015 Nov 15.
Article in English | MEDLINE | ID: mdl-26588991

ABSTRACT

Two interrelated problems in biology are understanding the regulatory logic and predictability of morphological evolution. Here, we studied these problems by comparing Arabidopsis thaliana, which has simple leaves, and its relative, Cardamine hirsuta, which has dissected leaves comprising leaflets. By transferring genes between the two species, we provide evidence for an inverse relationship between the pleiotropy of SHOOTMERISTEMLESS (STM) and BREVIPEDICELLUS (BP) homeobox genes and their ability to modify leaf form. We further show that cis-regulatory divergence of BP results in two alternative configurations of the genetic networks controlling leaf development. In C. hirsuta, ChBP is repressed by the microRNA164A (MIR164A)/ChCUP-SHAPED COTYLEDON (ChCUC) module and ChASYMMETRIC LEAVES1 (ChAS1), thus creating cross-talk between MIR164A/CUC and AS1 that does not occur in A. thaliana. These different genetic architectures lead to divergent interactions of network components and growth regulation in each species. We suggest that certain regulatory genes with low pleiotropy are predisposed to readily integrate into or disengage from conserved genetic networks influencing organ geometry, thus rapidly altering their properties and contributing to morphological divergence.


Subject(s)
Arabidopsis/growth & development , Arabidopsis/genetics , Cardamine/growth & development , Cardamine/genetics , Gene Regulatory Networks/genetics , Homeodomain Proteins/genetics , Plant Leaves , Plant Proteins/genetics , Arabidopsis/anatomy & histology , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Cardamine/anatomy & histology , Gene Expression Regulation, Plant , Homeodomain Proteins/metabolism , MicroRNAs/genetics , MicroRNAs/metabolism , Plant Leaves/anatomy & histology , Plant Leaves/genetics , Plant Leaves/growth & development , Plant Proteins/metabolism
7.
New Phytol ; 229(6): 3587-3601, 2021 03.
Article in English | MEDLINE | ID: mdl-33222195

ABSTRACT

Polyploidization is pervasive in plants, but little is known about the niche divergence of wild allopolyploids (species that harbor polyploid genomes originating from different diploid species) relative to their diploid progenitor species and the gene expression patterns that may underlie such ecological divergence. We conducted a fine-scale empirical study on habitat and gene expression of an allopolyploid and its diploid progenitors. We quantified soil properties and light availability of habitats of an allotetraploid Cardamine flexuosa and its diploid progenitors Cardamine amara and Cardamine hirsuta in two seasons. We analyzed expression patterns of genes and homeologs (homeologous gene copies in allopolyploids) using RNA sequencing. We detected niche divergence between the allopolyploid and its diploid progenitors along water availability gradient at a fine scale: the diploids in opposite extremes and the allopolyploid in a broader range between diploids, with limited overlap with diploids at both ends. Most of the genes whose homeolog expression ratio changed among habitats in C. flexuosa varied spatially and temporally. These findings provide empirical evidence for niche divergence between an allopolyploid and its diploid progenitor species at a fine scale and suggest that divergent expression patterns of homeologs in an allopolyploid may underlie its persistence in diverse habitats.


Subject(s)
Cardamine , Diploidy , Ecosystem , Polyploidy
8.
J Exp Bot ; 71(9): 2472-2478, 2020 05 09.
Article in English | MEDLINE | ID: mdl-31970400

ABSTRACT

The chance to watch floral organs develop live is not to be missed! Here, we outline reasons why quantitative, live-cell imaging is an important approach to study floral morphogenesis, and provide a basic workflow of how to get started. We highlight key advances in morphodynamics of lateral organ development, and discuss recent work that uses live confocal imaging to address the regulation of floral organ number, its robustness, and patterning mechanisms that exploit stochasticity.


Subject(s)
Arabidopsis , Flowers , Gene Expression Regulation, Plant , Morphogenesis
9.
Ann Bot ; 126(1): 39-59, 2020 06 19.
Article in English | MEDLINE | ID: mdl-31796954

ABSTRACT

BACKGROUND AND AIMS: Seeds are dispersed by explosive coiling of the fruit valves in Cardamine hirsuta. This rapid coiling launches the small seeds on ballistic trajectories to spread over a 2 m radius around the parent plant. The seed surface interacts with both the coiling fruit valve during launch and subsequently with the air during flight. We aim to identify features of the seed surface that may contribute to these interactions by characterizing seed coat differentiation. METHODS: Differentiation of the outermost seed coat layers from the outer integuments of the ovule involves dramatic cellular changes that we characterize in detail at the light and electron microscopical level including immunofluorescence and immunogold labelling. KEY RESULTS: We found that the two outer integument (oi) layers of the seed coat contributed differently to the topography of the seed surface in the explosively dispersed seeds of C. hirsuta vs. the related species Arabidopsis thaliana where seed dispersal is non-explosive. The surface of A. thaliana seeds is shaped by the columella and the anticlinal cell walls of the epidermal oi2 layer. In contrast, the surface of C. hirsuta seeds is shaped by a network of prominent ridges formed by the anticlinal walls of asymmetrically thickened cells of the sub-epidermal oi1 layer, especially at the seed margin. Both the oi2 and oi1 cell layers in C. hirsuta seeds are characterized by specialized, pectin-rich cell walls that are deposited asymmetrically in the cell. CONCLUSIONS: The two outermost seed coat layers in C. hirsuta have distinct properties: the sub-epidermal oi1 layer determines the topography of the seed surface, while the epidermal oi2 layer accumulates mucilage. These properties are influenced by polar deposition of distinct pectin polysaccharides in the cell wall. Although the ridged seed surface formed by oi1 cell walls is associated with ballistic dispersal in C. hirsuta, it is not restricted to explosively dispersed seeds in the Brassicaceae.


Subject(s)
Arabidopsis Proteins , Arabidopsis , Cardamine , Cell Wall , Seeds
10.
Aust N Z J Psychiatry ; 53(5): 424-432, 2019 05.
Article in English | MEDLINE | ID: mdl-30309241

ABSTRACT

OBJECTIVE: The aim of the study was to explore the range of psychiatric diagnoses seen in pregnant women who score above the 'cut-off' on the Edinburgh Postnatal Depression Scale when this is used as a routine screening instrument in the antenatal period. METHOD: Subjects were all pregnant women referred to and seen by the Perinatal Consultation-Liaison Psychiatry Team of a tertiary public hospital over a 14-month period. Edinburgh Postnatal Depression Scale score at maternity 'booking-in' visit, demographic and clinical data were recorded and diagnoses were made according to Diagnostic and Statistical Manual of Mental Disorders (5th ed.) criteria following clinical interview(s) and review of documented past history. Data were analysed using descriptive statistics. RESULTS: A total of 200 patients who had completed the Edinburgh Postnatal Depression Scale were seen for assessment; 86 (43%) scored ⩾13 on Edinburgh Postnatal Depression Scale. Of those scoring 13 or more on Edinburgh Postnatal Depression Scale, 22 (25.6%) had a depressive disorder. In total, 12 patients (14%) had an anxiety disorder, 14 (16.3%) had borderline personality disorder and 13 (15.1%) had a substance use disorder. An additional 23 women (26.7%) had two or more borderline personality traits. CONCLUSION: Psychiatric assessment of women who scored 13 or more on the Edinburgh Postnatal Depression Scale at routine antenatal screening identified a significant number with borderline personality disorder or borderline personality traits rather than depressive or anxiety disorders. Clinical Practice Guidelines note the importance of further assessment for all women who score 13 or more on the Edinburgh Postnatal Depression Scale. The findings here suggest that this assessment should be made by a clinician able to identify personality pathology and organise appropriate and timely interventions.


Subject(s)
Affective Symptoms/diagnosis , Borderline Personality Disorder/diagnosis , Depressive Disorder/diagnosis , Emotional Regulation , Pregnancy Complications/diagnosis , Adult , Anxiety Disorders/diagnosis , Female , Humans , Pregnancy , Prenatal Diagnosis , Psychiatric Status Rating Scales , Substance-Related Disorders/diagnosis
12.
Plant Physiol ; 175(2): 886-903, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28860156

ABSTRACT

Four petals characterize the flowers of most species in the Brassicaceae family, and this phenotype is generally robust to genetic and environmental variation. A variable petal number distinguishes the flowers of Cardamine hirsuta from those of its close relative Arabidopsis (Arabidopsis thaliana), and allelic variation at many loci contribute to this trait. However, it is less clear whether C. hirsuta petal number varies in response to seasonal changes in environment. To address this question, we assessed whether petal number responds to a suite of environmental and endogenous cues that regulate flowering time in C. hirsuta We found that petal number showed seasonal variation in C. hirsuta, such that spring flowering plants developed more petals than those flowering in summer. Conditions associated with spring flowering, including cool ambient temperature, short photoperiod, and vernalization, all increased petal number in C. hirsuta Cool temperature caused the strongest increase in petal number and lengthened the time interval over which floral meristems matured. We performed live imaging of early flower development and showed that floral buds developed more slowly at 15°C versus 20°C. This extended phase of floral meristem formation, coupled with slower growth of sepals at 15°C, produced larger intersepal regions with more space available for petal initiation. In summary, the growth and maturation of floral buds is associated with variable petal number in C. hirsuta and responds to seasonal changes in ambient temperature.


Subject(s)
Arabidopsis/physiology , Brassicaceae/physiology , Flowers/genetics , Photoperiod , Alleles , Arabidopsis/genetics , Arabidopsis/growth & development , Arabidopsis/ultrastructure , Brassicaceae/genetics , Brassicaceae/growth & development , Brassicaceae/ultrastructure , Cold Temperature , Flowers/growth & development , Flowers/physiology , Flowers/ultrastructure , Phenotype , Seasons
13.
Proc Natl Acad Sci U S A ; 112(33): 10539-44, 2015 Aug 18.
Article in English | MEDLINE | ID: mdl-26243877

ABSTRACT

A key problem in biology is whether the same processes underlie morphological variation between and within species. Here, by using plant leaves as an example, we show that the causes of diversity at these two evolutionary scales can be divergent. Some species like the model plant Arabidopsis thaliana have simple leaves, whereas others like the A. thaliana relative Cardamine hirsuta bear complex leaves comprising leaflets. Previous work has shown that these interspecific differences result mostly from variation in local tissue growth and patterning. Now, by cloning and characterizing a quantitative trait locus (QTL) for C. hirsuta leaf shape, we find that a different process, age-dependent progression of leaf form, underlies variation in this trait within species. This QTL effect is caused by cis-regulatory variation in the floral repressor ChFLC, such that genotypes with low-expressing ChFLC alleles show both early flowering and accelerated age-dependent changes in leaf form, including faster leaflet production. We provide evidence that this mechanism coordinates leaf development with reproductive timing and may help to optimize resource allocation to the next generation.


Subject(s)
Cardamine/genetics , Plant Leaves/anatomy & histology , Quantitative Trait Loci , Alleles , Arabidopsis , Base Sequence , Biodiversity , Chromosome Mapping , Cloning, Molecular , Flowers , Gene Expression Regulation, Plant , Genotype , Light , Models, Genetic , Molecular Sequence Data , Phenotype , Plants, Genetically Modified , Polymorphism, Genetic , Seeds , Sequence Homology, Nucleic Acid
14.
Development ; 141(23): 4590-7, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25359728

ABSTRACT

Maize leaves have distinct tissues that serve specific purposes. The blade tilts back to photosynthesize and the sheath wraps around the stem to provide structural support and protect young leaves. At the junction between blade and sheath are the ligule and auricles, both of which are absent in the recessive liguleless1 (lg1) mutant. Using an antibody against LG1, we reveal LG1 accumulation at the site of ligule formation and in the axil of developing tassel branches. The dominant mutant Wavy auricle in blade1 (Wab1-R) produces ectopic auricle tissue in the blade and increases the domain of LG1 accumulation. We determined that wab1 encodes a TCP transcription factor by positional cloning and revertant analysis. Tassel branches are few and upright in the wab1 revertant tassel and have an increased branch angle in the dominant mutant. wab1 mRNA is expressed at the base of branches in the inflorescence and is necessary for LG1 expression. wab1 is not expressed in leaves, except in the dominant mutant. The domain of wab1 expression in the Wab1-R leaf closely mirrors the accumulation of LG1. Although wab1 is not needed to induce lg1 expression in the leaf, LG1 is needed to counteract the severe phenotype of the dominant Wab1-R mutant. The regulatory interaction of LG1 and WAB1 reveals a link between leaf shape and tassel architecture, and suggests the ligule is a boundary similar to that at the base of lateral organs.


Subject(s)
Gene Expression Regulation, Developmental/genetics , Gene Expression Regulation, Plant/genetics , Organogenesis, Plant/physiology , Plant Leaves/physiology , Plant Proteins/metabolism , Transcription Factors/metabolism , Zea mays/genetics , Cloning, Molecular , Gene Expression Regulation, Developmental/physiology , Gene Expression Regulation, Plant/physiology , Genotype , In Situ Hybridization , Organogenesis, Plant/genetics , Plant Leaves/anatomy & histology , Plant Leaves/genetics , Plant Proteins/genetics , Real-Time Polymerase Chain Reaction , Transcription Factors/genetics , Zea mays/physiology
15.
New Phytol ; 216(2): 549-561, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28098947

ABSTRACT

A conserved genetic toolkit underlies the development of diverse floral forms among angiosperms. However, the degree of conservation vs divergence in the configuration of these gene regulatory networks is less clear. We addressed this question in a parallel genetic study between the closely related species Arabidopsis thaliana and Cardamine hirsuta. We identified leafy (lfy) and apetala1 (ap1) alleles in a mutant screen for floral regulators in C. hirsuta. C. hirsuta lfy mutants showed a complete homeotic conversion of flowers to leafy shoots, mimicking lfy ap1 double mutants in A. thaliana. Through genetic and molecular experiments, we showed that AP1 activation is fully dependent on LFY in C. hirsuta, by contrast to A. thaliana. Additionally, we found that LFY influences heteroblasty in C. hirsuta, such that loss or gain of LFY function affects its progression. Overexpression of UNUSUAL FLORAL ORGANS also alters C. hirsuta leaf shape in an LFY-dependent manner. We found that LFY and AP1 are conserved floral regulators that act nonredundantly in C. hirsuta, such that LFY has more obvious roles in floral and leaf development in C. hirsuta than in A. thaliana.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Cardamine/metabolism , Conserved Sequence , MADS Domain Proteins/metabolism , Transcription Factors/metabolism , Arabidopsis/genetics , Cardamine/genetics , Cardamine/ultrastructure , Flowers/physiology , Gene Expression Regulation, Plant , Mutation/genetics , Plant Leaves/anatomy & histology , Plant Shoots/physiology , Species Specificity
16.
Nat Genet ; 40(9): 1136-41, 2008 Sep.
Article in English | MEDLINE | ID: mdl-19165928

ABSTRACT

The developmental basis for the generation of divergent leaf forms is largely unknown. Here we investigate this problem by studying processes that distinguish development of two related species: Arabidopsis thaliana, which has simple leaves, and Cardamine hirsuta, which has dissected leaves with individual leaflets. Using genetics, expression studies and cell lineage tracing, we show that lateral leaflet formation in C. hirsuta requires the establishment of growth foci that form after leaf initiation. These growth foci are recruited at the leaf margin in response to activity maxima of auxin, a hormone that polarizes growth in diverse developmental contexts. Class I KNOTTED1-like homeobox (KNOX) proteins also promote leaflet initiation in C. hirsuta, and here we provide evidence that this action of KNOX proteins is contingent on the ability to organize auxin maxima via the PINFORMED1 (PIN1) auxin efflux transporter. Thus, differential deployment of a fundamental mechanism polarizing cellular growth contributed to the diversification of leaf form during evolution.


Subject(s)
Arabidopsis/genetics , Cardamine/genetics , Plant Leaves/growth & development , Arabidopsis/growth & development , Arabidopsis/metabolism , Arabidopsis Proteins/metabolism , Biological Evolution , Cardamine/growth & development , Cardamine/metabolism , Cell Cycle , Cell Lineage , Gene Expression Regulation, Developmental , Homeodomain Proteins/metabolism , Indoleacetic Acids/metabolism , Membrane Transport Proteins/metabolism , Mutation , Plant Leaves/genetics , Plant Proteins/metabolism
17.
New Phytol ; 209(1): 395-406, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26268614

ABSTRACT

Invariant petal number is a characteristic of most flowers and is generally robust to genetic and environmental variation. We took advantage of the natural variation found in Cardamine hirsuta petal number to investigate the genetic basis of this trait in a case where robustness was lost during evolution. We used quantitative trait locus (QTL) analysis to characterize the genetic architecture of petal number. Αverage petal number showed transgressive variation from zero to four petals in five C. hirsuta mapping populations, and this variation was highly heritable. We detected 15 QTL at which allelic variation affected petal number. The effects of these QTL were relatively small in comparison with alleles induced by mutagenesis, suggesting that natural selection may act to maintain petal number within its variable range below four. Petal number showed a temporal trend during plant ageing, as did sepal trichome number, and multi-trait QTL analysis revealed that these age-dependent traits share a common genetic basis. Our results demonstrate that petal number is determined by many genes of small effect, some of which are age-dependent, and suggests a mechanism of trait evolution via the release of cryptic variation.


Subject(s)
Cardamine/genetics , Flowers/genetics , Quantitative Trait Loci/genetics , Alleles , Biological Evolution , Cardamine/anatomy & histology , Flowers/anatomy & histology , Phenotype , Selection, Genetic
18.
Ann Bot ; 117(5): 881-7, 2016 04.
Article in English | MEDLINE | ID: mdl-26346720

ABSTRACT

BACKGROUND AND AIMS: Floral development is remarkably robust in terms of the identity and number of floral organs in each whorl, whereas vegetative development can be quite plastic. This canalization of flower development prevents the phenotypic expression of cryptic genetic variation, even in fluctuating environments. A cruciform perianth with four petals is a hallmark of the Brassicaceae family, typified in the model species Arabidopsis thaliana However, variable petal loss is found in Cardamine hirsuta, a genetically tractable relative of A. thaliana Cardamine hirsuta petal number varies in response to stochastic, genetic and environmental perturbations, which makes it an interesting model to study mechanisms of decanalization and the expression of cryptic variation. METHODS: Multitrait quantitative trait locus (QTL) analysis in recombinant inbred lines (RILs) was used to identify whether the stochastic variation found in C. hirsuta petal number had a genetic basis. KEY RESULTS: Stochastic variation (standard error of the average petal number) was found to be a heritable phenotype, and four QTL that influenced this trait were identified. The sensitivity to detect these QTL effects was increased by accounting for the effect of ageing on petal number variation. All QTL had significant effects on both average petal number and its standard error, indicating that these two traits share a common genetic basis. However, for some QTL, a degree of independence was found between the age of the flowers where allelic effects were significant for each trait. CONCLUSIONS: Stochastic variation in C. hirsuta petal number has a genetic basis, and common QTL influence both average petal number and its standard error. Allelic variation at these QTL can, therefore, modify petal number in an age-specific manner via effects on the phenotypic mean and stochastic variation. These results are discussed in the context of trait evolution via a loss of robustness.


Subject(s)
Cardamine/anatomy & histology , Cardamine/genetics , Flowers/genetics , Quantitative Trait Loci , Flowers/anatomy & histology , Genetic Variation , Recombination, Genetic , Stochastic Processes
19.
Plant J ; 78(1): 1-15, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24460550

ABSTRACT

A major goal in biology is to identify the genetic basis for phenotypic diversity. This goal underpins research in areas as diverse as evolutionary biology, plant breeding and human genetics. A limitation for this research is no longer the availability of sequence information but the development of functional genetic tools to understand the link between changes in sequence and phenotype. Here we describe Cardamine hirsuta, a close relative of the reference plant Arabidopsis thaliana, as an experimental system in which genetic and transgenic approaches can be deployed effectively for comparative studies. We present high-resolution genetic and cytogenetic maps for C. hirsuta and show that the genome structure of C. hirsuta closely resembles the eight chromosomes of the ancestral crucifer karyotype and provides a good reference point for comparative genome studies across the Brassicaceae. We compared morphological and physiological traits between C. hirsuta and A. thaliana and analysed natural variation in stamen number in which lateral stamen loss is a species characteristic of C. hirsuta. We constructed a set of recombinant inbred lines and detected eight quantitative trait loci that can explain stamen number variation in this population. We found clear phylogeographic structure to the genetic variation in C. hirsuta, thus providing a context within which to address questions about evolutionary changes that link genotype with phenotype and the environment.


Subject(s)
Cardamine/genetics , Chromosomes, Plant/genetics , Genetic Variation , Genome, Plant/genetics , Arabidopsis/cytology , Arabidopsis/genetics , Arabidopsis/physiology , Brassicaceae/cytology , Brassicaceae/genetics , Brassicaceae/physiology , Cardamine/cytology , Cardamine/physiology , Environment , Evolution, Molecular , Genotype , Karyotype , Phenotype , Phylogeography , Plant Components, Aerial/cytology , Plant Components, Aerial/genetics , Plant Components, Aerial/physiology , Plant Roots/cytology , Plant Roots/genetics , Plant Roots/physiology , Quantitative Trait Loci , Transcriptome
20.
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