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1.
BMC Infect Dis ; 20(1): 238, 2020 Mar 20.
Article in English | MEDLINE | ID: mdl-32197585

ABSTRACT

BACKGROUND: Anemia is common among people living with HIV infection (PLWH) and is associated with adverse health outcomes. Information on risk factors for anemia incidence in the current antiretroviral therapy (ART) era is lacking. METHODS: Within a prospective clinical cohort of adult PLWH receiving care at eight sites across the United States between 1/2010-3/2018, Cox proportional hazards regression analyses were conducted among a) PLWH free of anemia at baseline and b) PLWH free of severe anemia at baseline to determine associations between time-updated patient characteristics and development of anemia (hemoglobin < 10 g/dL), or severe anemia (hemoglobin < 7.5 g/dL). Linear mixed effects models were used to examine relationships between patient characteristics and hemoglobin levels during follow-up. Hemoglobin levels were ascertained using laboratory data from routine clinical care. Potential risk factors included: age, sex, race/ethnicity, body mass index, smoking status, hazardous alcohol use, illicit drug use, hepatitis C virus (HCV) coinfection, estimated glomerular filtration rate (eGFR), CD4 cell count, viral load, ART use and time in care at CNICS site. RESULTS: This retrospective cohort study included 15,126 PLWH. During a median follow-up of 6.6 (interquartile range [IQR] 4.3-7.6) years, 1086 participants developed anemia and 465 participants developed severe anemia. Factors that were associated with incident anemia included: older age, female sex, black race, HCV coinfection, lower CD4 cell counts, VL ≥400 copies/ml and lower eGFR. CONCLUSION: Because anemia is a treatable condition associated with increased morbidity and mortality among PLWH, hemoglobin levels should be monitored routinely, especially among PLWH who have one or more risk factors for anemia.


Subject(s)
Anemia/epidemiology , Anemia/etiology , HIV Infections/complications , Hemoglobins/analysis , Adult , Anti-Retroviral Agents/adverse effects , Anti-Retroviral Agents/therapeutic use , CD4 Lymphocyte Count , Coinfection/complications , Female , Follow-Up Studies , Glomerular Filtration Rate , HIV , HIV Infections/blood , HIV Infections/drug therapy , HIV Infections/virology , Hepatitis C/complications , Humans , Incidence , Male , Middle Aged , Prospective Studies , Retrospective Studies , Risk Factors , Substance-Related Disorders/complications , United States/epidemiology , Viral Load
2.
Avian Pathol ; 46(3): 242-255, 2017 Jun.
Article in English | MEDLINE | ID: mdl-27766900

ABSTRACT

Infectious bursal disease virus (IBDV) is endemic to most poultry-producing countries worldwide. Immunosuppressive classical and variant IBDV strains endemic to Australia are genetically distinct from other international strains. We report the results of infection experiments with Australian classical strain 06/95 and variant strain 02/95 in SPF chickens. We tested the effects of strain and age of infection on bursal atrophy, viral RNA (vRNA) load in bursa of Fabricius (bursa), spleen, thymus, caecal tonsils, faeces, litter and exhaust dust as determined by real-time reverse transcriptase polymerase chain reaction. The two IBDV strains did not differ in the degree of bursal atrophy induced, lymphoid organ distribution and faecal shedding but variant strain 02/95 induced a greater antibody response to the infection than classical strain 06/95 which was associated with a more rapid decline in IBDV vRNA genome copy number (VCN) in lymphoid organs and faeces. Infection at 14 days of age induced greater bursal atrophy and higher vRNA copy number in lymphoid tissues than infection on the day of hatching, indicating true age susceptibility independent of maternal antibody (Mab) status. The direction of the association between rankings for IBDV vRNA load in bursa and relative bursal weight changed from positive at 3 and 6 days post-infection to negative at 28 days post-infection. Intra-tracheal administration of dust collected from chickens infected with IBDV resulted in successful transmission of IBDV. IBDV vRNA was detected successfully at high levels in the environmental litter and dust samples.


Subject(s)
Antibodies, Viral/immunology , Birnaviridae Infections/veterinary , Chickens/virology , Infectious bursal disease virus/pathogenicity , Poultry Diseases/virology , Animals , Birnaviridae Infections/virology , Bursa of Fabricius/virology , Female , Infectious bursal disease virus/genetics , Infectious bursal disease virus/immunology , Infectious bursal disease virus/physiology , Lymphoid Tissue/virology , Male , RNA, Viral/analysis , Specific Pathogen-Free Organisms , Spleen/virology , Tissue Distribution , Viral Load/veterinary , Virulence
3.
Clin Infect Dis ; 56(10): 1471-9, 2013 May.
Article in English | MEDLINE | ID: mdl-23386631

ABSTRACT

BACKGROUND: Excessive inflammation persists despite antiretroviral treatment. Statins decrease cardiovascular (CV) disease risk by reducing low-density lipoprotein cholesterol and inflammation. We performed an exploratory analysis to evaluate whether statin therapy decreased risk of non-AIDS-defining events and nonaccidental death. METHODS: A total of 3601 subjects not on a statin from the AIDS Clinical Trials Group Longitudinal Linked Randomized Trials cohort were included. Outcome was time to first clinical event (CV event, renal or hepatic disease, incident diabetes, thrombotic/embolic event, nontraumatic fracture, non-AIDS-defining malignancy, serious bacterial infection, or nonaccidental death); event categories were also analyzed separately. Inverse probability of treatment and censoring weighted Cox proportional hazard models were used to assess the causal statin effect. Differential statin effects by baseline covariates were evaluated. RESULTS: Over 15 135 person-years (PY) of follow-up, 484 subjects initiated statins; 616 experienced an event (crude event rate, 4.4/100 PY on a statin and 4.1/100 PY not on a statin); the unadjusted hazard ratio (HR) was 1.17 (95% confidence interval [CI], .91-1.50). In a final weighted model, the adjusted HR (AHR) was 0.81 (95% CI, .53- 1.24). Results for other clinical events were similar, except for malignancies (AHR, 0.43 [95% CI, .19-.94]) and bacterial infections (AHR, 1.30 [95% CI, .64-2.65]). No differential statin effects by baseline covariates were detected. CONCLUSIONS: Although statin therapy was not associated with a reduction in time to all non-AIDS-defining event or nonaccidental death, it was associated with a statistically significant 57% reduction in non-AIDS-defining malignancies. Confirmatory studies are needed to evaluate statin-associated reduction in risk of cancer and non-AIDS-associated morbidities.


Subject(s)
HIV Infections/epidemiology , Hydroxymethylglutaryl-CoA Reductase Inhibitors/administration & dosage , Adult , Cardiovascular Diseases/epidemiology , Cardiovascular Diseases/virology , Cohort Studies , Diabetes Complications/epidemiology , Diabetes Complications/virology , Female , HIV Infections/complications , Humans , Inflammation/drug therapy , Inflammation/virology , Longitudinal Studies , Male , Middle Aged , Neoplasms/epidemiology , Neoplasms/virology , Proportional Hazards Models , Randomized Controlled Trials as Topic
4.
Aust Vet J ; 101(9): 321-333, 2023 Sep.
Article in English | MEDLINE | ID: mdl-37401786

ABSTRACT

The Australian ruminant livestock industries are faced with the need to control parasitic infectious diseases that can seriously impact the health of animals. However, increasing levels of resistance to insecticides, anthelmintics and acaricides are substantially reducing the ability to control some of these parasites. Here we review the current situation with regard to chemical resistances in parasites across the various sectors of the Australian ruminant livestock industries and assess the level of threat that these resistances pose to the sustainability of these sectors in the short to long terms. We also look at the extent to which testing for resistance occurs across the various industry sectors, and hence how well-informed these sectors are of the extent of chemical resistance. We examine on-farm management practices, breeding of parasite-resistant animals, and non-chemical therapeutics that may act as short to long term means to reduce the current reliance on chemicals for parasite control. Finally, we look at the balance between the prevalence and magnitude of current resistances and the availability and adoption rates of management, breeding and therapeutic alternatives in order to assess the parasite control outlook for the various industry sectors.


Subject(s)
Acaricides , Anthelmintics , Insecticides , Animals , Livestock , Acaricides/pharmacology , Australia , Ruminants/parasitology , Anthelmintics/pharmacology , Anthelmintics/therapeutic use , Drug Resistance
5.
medRxiv ; 2021 Dec 08.
Article in English | MEDLINE | ID: mdl-34909782

ABSTRACT

OBJECTIVES: To define the incidence of clinically-detected COVID-19 in people with HIV (PWH) in the US and evaluate how racial and ethnic disparities, comorbidities, and HIV-related factors contribute to risk of COVID-19. DESIGN: Observational study within the CFAR Network of Integrated Clinical Systems cohort in 7 cities during 2020. METHODS: We calculated cumulative incidence rates of COVID-19 diagnosis among PWH in routine care by key characteristics including race/ethnicity, current and lowest CD4 count, and geographic area. We evaluated risk factors for COVID-19 among PWH using relative risk regression models adjusted with disease risk scores. RESULTS: Among 16,056 PWH in care, of whom 44.5% were Black, 12.5% were Hispanic, with a median age of 52 years (IQR 40-59), 18% had a current CD4 count < 350, including 7% < 200; 95.5% were on antiretroviral therapy, and 85.6% were virologically suppressed. Overall in 2020, 649 PWH were diagnosed with COVID-19 for a rate of 4.94 cases per 100 person-years. The cumulative incidence of COVID-19 was 2.4-fold and 1.7-fold higher in Hispanic and Black PWH respectively, than non-Hispanic White PWH. In adjusted analyses, factors associated with COVID-19 included female sex, Hispanic or Black identity, lowest historical CD4 count <350 (proxy for CD4 nadir), current low CD4/CD8 ratio, diabetes, and obesity. CONCLUSIONS: Our results suggest that the presence of structural racial inequities above and beyond medical comorbidities increased the risk of COVID-19 among PWHPWH with immune exhaustion as evidenced by lowest historical CD4 or current low CD4:CD8 ratio had greater risk of COVID-19.

6.
Parasitology ; 137(8): 1275-82, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20388239

ABSTRACT

This study aimed to identify putative quantitative trait loci (QTL) that significantly affect internal parasite resistance in a backcross sheep population. A Romney x Merino backcross (to Merino) flock was challenged in 3 separate infections with Trichostrongylus colubriformis (primary and secondary) and Haemonchus contortus (tertiary). Haematological parameters were measured and faecal worm egg counts (FWEC) were established to estimate parasite burden. QTL mapping was conducted for FWEC and for the changes in haematocrit following H. contortus challenge and in eosinophil numbers following T. colubriformis challenge. Animals were genotyped for 55 microsatellite markers on selected chromosomes 2, 3, 6, 11, 13, 15, 21, and 22. Four putative quantitative trait loci were found; these being for eosinophil change in the primary infection (OAR 21), for FWEC in the first infection and eosinophil change in the secondary infection (OAR 3) and for FWEC in the secondary infection (OAR 22). No significant quantitative trait loci were detected for FWEC or haematocrit change during the Haemonchus contortus infection. The position of the putative quantitative trait loci for eosinophil change on OAR 3 is consistent with other reports of parasite resistance quantitative trait loci, implying some commonality between studies.


Subject(s)
Genetic Linkage , Haemonchiasis/veterinary , Quantitative Trait Loci/genetics , Sheep Diseases/genetics , Sheep Diseases/immunology , Trichostrongylosis/veterinary , Animals , Eosinophils/cytology , Feces/parasitology , Female , Genome-Wide Association Study , Genotype , Haemonchiasis/genetics , Haemonchiasis/immunology , Haemonchiasis/parasitology , Haemonchus/pathogenicity , Hematocrit , Immunity, Innate , Leukocyte Count/veterinary , Male , Parasite Egg Count , Sheep , Sheep Diseases/parasitology , Trichostrongylosis/genetics , Trichostrongylosis/immunology , Trichostrongylosis/parasitology , Trichostrongylus/pathogenicity
7.
Parasitology ; 137(4): 705-17, 2010 Apr.
Article in English | MEDLINE | ID: mdl-19835651

ABSTRACT

The use of DNA markers to track the development of anthelmintic resistance in parasites of livestock would allow informed choices for the management of this important problem. We describe a genetic mapping approach for the discovery of DNA markers for anthelmintic resistance in Haemonchus contortus. We crossed a multi-drug resistant field isolate of H. contortus with a well-characterized laboratory strain susceptible to 4 drug classes. The F2 were separately selected with 5 anthelmintics from 4 drug classes, producing drug-resistant populations carrying gene variants derived from both the field isolate and the laboratory strain. Individual F2 worms were analysed using amplicon length polymorphisms (ALPs). We looked for field isolate alleles over- or under-represented in F2 populations compared to the unselected F2 and/or the laboratory strain. The data we obtained suggest that marker association can be used to link neutral markers with resistance, but also that more markers and perhaps more inbred laboratory strains would make the procedure more likely to succeed.


Subject(s)
Anthelmintics/pharmacology , Drug Resistance, Multiple/genetics , Genetic Loci , Haemonchus/drug effects , Alleles , Animals , Australia , Chromosome Mapping , DNA, Helminth/genetics , Female , Gene Frequency , Genes, Helminth , Genetic Markers , Haemonchiasis/parasitology , Haemonchiasis/veterinary , Haemonchus/genetics , Male , Polymorphism, Restriction Fragment Length , Sheep/parasitology , Sheep Diseases/parasitology
8.
J Nematol ; 41(1): 35-51, 2009 Mar.
Article in English | MEDLINE | ID: mdl-22661776

ABSTRACT

In common with many other groups, nematodes express globins with unknown functions. Nematode globin-like genes can be divided into class 1 globins, similar to vertebrate myoglobins, and a wide range of additional classes. Here we show that class 1 nematode globins possess a huge amount of diversity in gene sequence and structure. There is evidence for multiple events of gene duplication, intron insertion and loss between species, and for allelic variation effecting both synonymous and non-synonymous sites within species. We have also examined gene expression patterns in class I globins from a variety of species. The results show variation in the degree of gene expression, but the tissue specificity and temporal specificity of expression may be more conserved in the phylum. Because the structure-function relationships for the binding and transport of oxygen by globins are well understood, the consequences of genetic variation causing amino acid changes are explored. The gene family shows great promise for discovering unique insights into both structure-function relationships of globins and their physiologial roles.

9.
Int J Parasitol ; 38(8-9): 885-900, 2008 Jul.
Article in English | MEDLINE | ID: mdl-18068173

ABSTRACT

We believe this study is the first to consider the genetic and phenotypic divergence between isolates of Haemonchus contortus in Australia. Microsatellite markers have been used to investigate genetic divergence, whilst phenotypic divergence has been considered through individual worm morphology, isolate life history traits and the effect of isolates upon the host. The results are discussed in the context of the likely introduction of H. contortus to Australia, its recent isolation, and the characteristics of sheep and goat farming which might act to either isolate or distribute parasites. We conclude that there is significant observable genetic divergence between isolates of H. contortus in Australia. The divergence may have been under-estimated in this study due to a variety of factors. Phenotypic divergence is also observed, and potentially has significant implications for both economic losses due to haemonchosis on individual properties and for decisions regarding the regulation of stock movements in Australia.


Subject(s)
Genetic Variation , Haemonchiasis/genetics , Haemonchus/genetics , Sheep Diseases/parasitology , Animal Husbandry/economics , Animals , Australia , Female , Haemonchiasis/veterinary , Haemonchus/anatomy & histology , Haemonchus/isolation & purification , Larva/growth & development , Microsatellite Repeats , Parasite Egg Count , Phenotype , Sheep , Tropical Climate , Wool/economics , Wool/growth & development
10.
Poult Sci ; 97(6): 1914-1921, 2018 Jun 01.
Article in English | MEDLINE | ID: mdl-29562346

ABSTRACT

A study was conducted to determine the performance, egg quality, and liver lipid reserves of laying hens exposed to ranges contaminated with Ascaridia galli. Sixteen-week-old Lohmann Brown laying hens (n = 200) were divided into 4 treatments with 5 replicates containing 10 hens per pen. Hens of treatment 1 [negative control (NC)] ranged on a decontaminated area, and hens of treatments 2 (low infection) and 3 (medium infection) ranged on areas previously contaminated by hens artificially infected with 250 and 1,000 embryonated A. galli eggs, respectively. The hens of treatment 4 [positive control (PC)] ranged on areas previously contaminated by hens artificially infected with 2,500 embryonated A. galli eggs, and in addition these hens were orally inoculated with 1,000 embryonated eggs. Results indicated that hens of the medium infection group had a higher number of intestinal A. galli worms and A. galli eggs in the coprodeum excreta (43.9 ± 4.0 and 3,437 ± 459 eggs/g) compared to hens of the low infection group (23.8 ± 4.0 and 1,820 ± 450 eggs/g) (P < 0.01) and similar worm counts to PC hens (34.4 ± 4.0 and 2,918 ± 474) (P > 0.05). Egg production, egg mass, feed intake, and feed conversion ratio (FCR) were not affected by A. galli infection (P > 0.05). Egg quality parameters (egg weight, shell reflectivity, shell weight, shell thickness, shell percentage, shell breaking strength, deformation, albumen height, Haugh unit, and yolk score) were not affected by A. galli infection (P > 0.05). Highly infected hens had lower liver lipid content (2.72 ± 0.51 g) compared to uninfected hens (4.46 ± 0.58 g, P < 0.01). The results indicate that exposure to ranges contaminated with A. galli resulted in infection of the ranging hens, but this did not affect egg production or egg quality. Infection with A. galli lowered the liver lipid reserves of the host significantly, suggesting infected hens use more energy reserves for maintenance and production.


Subject(s)
Animal Husbandry/methods , Ascaridiasis/veterinary , Chickens , Lipids/analysis , Ovum/physiology , Poultry Diseases/parasitology , Animals , Ascaridia/physiology , Ascaridiasis/parasitology , Chickens/growth & development , Female , Liver/chemistry , New South Wales , Random Allocation
11.
Poult Sci ; 97(2): 494-502, 2018 Feb 01.
Article in English | MEDLINE | ID: mdl-29253271

ABSTRACT

This study was conducted to determine the effect of Ascaridia galli infection on free-range laying hens. Lohmann Brown laying hens (n = 200) at 17 wk of age were allocated to 4 treatment groups (n = 50 per group), each with 5 replicate pens of 10 hens. Hens in 3 treatment groups were orally inoculated with different doses of embryonated A. galli eggs: low (250 eggs), medium (1,000 eggs), and high (2,500 eggs) levels, whereas hens of the control group were not infected. Infection levels were monitored using excreta egg counts and mature A. galli worm counts in the intestine. Anti A. galli antibody titers (IgY) in the serum were measured prior to infection, and at 6, 11, 15, and 20 wk post infection (PI) and in egg yolk at 11 and 20 wk PI. Parameters evaluated included feed intake, egg production, egg weight, egg mass, FCR, liver weight, liver fat, and intra epithelial immune cell infiltration. The results showed no difference in feed intake, body weight, or FCR among any treatment groups (P > 0.05). Egg production was lower in the low infection group compared to other groups at 20 wk of age (P < 0.01). Serum IgY was higher in the infected groups' hens at 20 wk PI compared to control group hens (P < 0.01). Yolk IgY increased significantly over time and was higher in infected hens compared to hens of the control group at 11 and 20 wk PI (P < 0.001). No differences were observed in liver lipid content or intraepithelial lymphocytes infiltration among treatment groups. Ascaridia galli eggs in the coprodeum content and adult A. galli worm count were higher in infected hens compared to hens of the control group (P < 0.01). In conclusion, the effects of artificial infection with A. galli on the parameters investigated were minor, and egg yolk antibody may be a more reliable indicator of A. galli infection than serum antibody or excreta egg count.


Subject(s)
Antibodies, Helminth/metabolism , Ascaridiasis/veterinary , Chickens , Immunity, Innate , Poultry Diseases/parasitology , Reproduction , Animals , Antibodies, Helminth/blood , Ascaridia/physiology , Ascaridiasis/immunology , Ascaridiasis/parasitology , Ascaridiasis/physiopathology , Body Weight , Egg Yolk/chemistry , Feeding Behavior , Female , Intestinal Mucosa/immunology , Lymphocytes/physiology , Ovum/parasitology , Ovum/physiology , Poultry Diseases/immunology , Poultry Diseases/physiopathology , Random Allocation
12.
Mucosal Immunol ; 10(1): 69-78, 2017 01.
Article in English | MEDLINE | ID: mdl-27049061

ABSTRACT

Invariant natural killer T (iNKT) cells are innate-like T cells that respond to lipid antigens presented by CD1d. These immunoregulatory cells have the capacity for rapid cytokine release after antigen recognition and are essential for the activation of multiple arms of the immune response. HIV-1 infection is associated with iNKT cell depletion in the peripheral blood; however, their role in the gastrointestinal-associated lymphoid tissue (GALT) is less well studied. Our results show that iNKT cells are found at a higher frequency in GALT compared with blood, particularly in HIV-1 elite controllers. The capacity of iNKT cells to produce interleukin-4 (IL-4) and IL-10 in the GALT was associated with less immune activation and lower markers of microbial translocation, whereas regulatory T cell frequency showed positive associations with immune activation. We hypothesized that the composition of the microbiota would influence iNKT cell frequency and function. We found positive associations between the abundance of several Bacteroides species and iNKT cell frequency and their capacity to produce IL-4 in the GALT but not in the blood. Overall, our results are consistent with the hypothesis that GALT iNKT cells, influenced by certain bacterial species, may have a key role in regulating immune activation in HIV-1 infection.


Subject(s)
Bacteroides/immunology , Gastrointestinal Microbiome/immunology , HIV Infections/immunology , HIV-1/immunology , Intestines/immunology , Natural Killer T-Cells/immunology , T-Lymphocytes, Regulatory/immunology , Adult , Aged , Antigens, CD1d/metabolism , Cells, Cultured , Female , Humans , Immunity, Innate , Interleukin-10/metabolism , Interleukin-4/metabolism , Lipids/immunology , Male , Middle Aged , Natural Killer T-Cells/microbiology , Natural Killer T-Cells/virology , Young Adult
13.
Mucosal Immunol ; 10(4): 1008-1020, 2017 07.
Article in English | MEDLINE | ID: mdl-27827375

ABSTRACT

The gastrointestinal mucosa is an important site of HIV acquisition, viral replication, and pathogenesis. Immune cells in mucosal tissues frequently differ in phenotype and function from their non-mucosal counterparts. Although perforin-mediated cytotoxicity as measured in blood is a recognized correlate of HIV immune control, its role in gastrointestinal tissues is unknown. We sought to elucidate the cytotoxic features of rectal mucosal CD8+ T-cells in HIV infected and uninfected subjects. Perforin expression and lytic capacity were significantly reduced in rectal CD8+ T-cells compared with their blood counterparts, regardless of HIV clinical status; granzyme B (GrzB) was reduced to a lesser extent. Mucosal perforin and GrzB expression were higher in participants not on antiretroviral therapy compared with those on therapy and controls. Reduction in perforin and GrzB was not explained by differences in memory/effector subsets. Expression of T-bet and Eomesodermin was significantly lower in gut CD8+ T-cells compared with blood, and in vitro neutralization of TGF-ß partially restored perforin expression in gut CD8+ T-cells. These findings suggest that rectal CD8+ T-cells are primarily non-cytotoxic, and phenotypically shaped by the tissue microenvironment. Further elucidation of rectal immune responses to HIV will inform the development of vaccines and immunotherapies targeted to mucosal tissues.


Subject(s)
AIDS Vaccines/immunology , CD8-Positive T-Lymphocytes/immunology , HIV Infections/immunology , Intestinal Mucosa/immunology , Rectum/metabolism , Anti-Retroviral Agents/therapeutic use , Cells, Cultured , Cellular Microenvironment , Cytotoxicity, Immunologic , Female , Granzymes/metabolism , HIV Infections/drug therapy , Humans , Male , Perforin/metabolism , Rectum/pathology , T-Box Domain Proteins/metabolism , Transforming Growth Factor beta/metabolism
14.
Vet Parasitol ; 186(1-2): 101-8, 2012 May 04.
Article in English | MEDLINE | ID: mdl-22169224

ABSTRACT

Traditional methods for the diagnosis of parasitic helminth infections of livestock have a number of limitations, such as the inability to distinguish mixed-species infections, a heavy reliance on technical experience and also sub-sampling errors. Some of these limitations may be overcome through the development of rapid and accurate DNA-based tests. For example, DNA-based tests can specifically detect individual species in a mixed infection at either the larval or egg stages, in the absence of morphological differences among species. Even so, some diagnostic problems remain the same, irrespective of whether a DNA-based or traditional method is used. For example, sub-sampling errors from an aggregated distribution are likely to persist. It is proposed, however, that DNA-based diagnostic technologies offer an opportunity to expand diagnostic capabilities, and are discussed in the current review. The future introduction of DNA-based diagnostic technologies into routine diagnostic settings will also be discussed.


Subject(s)
Cattle Diseases/diagnosis , DNA, Helminth/genetics , Goat Diseases/diagnosis , Helminthiasis, Animal/diagnosis , Helminths/genetics , Sheep Diseases/diagnosis , Animals , Cattle , Cattle Diseases/parasitology , Coinfection/veterinary , Feces/parasitology , Female , Goat Diseases/parasitology , Goats , Helminthiasis, Animal/parasitology , Parasite Egg Count/veterinary , Sheep , Sheep Diseases/parasitology , Species Specificity
15.
Mucosal Immunol ; 5(1): 30-40, 2012 Jan.
Article in English | MEDLINE | ID: mdl-21993602

ABSTRACT

The human gut mucosa is a major site of human immunodeficiency virus (HIV) infection and infection-associated pathogenesis. Increasing evidence shows that natural killer (NK) cells have an important role in control of HIV infection, but the mechanism(s) by which they mediate antiviral activity in the gut is unclear. Here, we show that two distinct subsets of NK cells exist in the gut, one localized to intraepithelial spaces (intraepithelial lymphocytes, IELs) and the other to the lamina propria (LP). The frequency of both subsets of NK cells was reduced in chronic infection, whereas IEL NK cells remained stable in spontaneous controllers with protective killer immunoglobulin-like receptor/human leukocyte antigen genotypes. Both IEL and LP NK cells were significantly expanded in immunological non-responsive patients, who incompletely recovered CD4+ T cells on highly active antiretroviral therapy (HAART). These data suggest that both IEL and LP NK cells may expand in the gut in an effort to compensate for compromised CD4+ T-cell recovery, but that only IEL NK cells may be involved in providing durable control of HIV in the gut.


Subject(s)
HIV Infections/immunology , HIV/immunology , Intestinal Mucosa/metabolism , Killer Cells, Natural/metabolism , Lymphocyte Subsets/metabolism , Antiretroviral Therapy, Highly Active , Biomarkers, Pharmacological/metabolism , Biopsy , Cell Movement/drug effects , Cell Movement/immunology , DNA Mutational Analysis , Genotype , HIV/pathogenicity , HIV Infections/diagnosis , HIV Infections/drug therapy , HIV Infections/genetics , HLA Antigens/genetics , HLA Antigens/metabolism , Humans , Intestinal Mucosa/immunology , Intestinal Mucosa/pathology , Killer Cells, Natural/drug effects , Killer Cells, Natural/immunology , Killer Cells, Natural/pathology , Lymphocyte Subsets/drug effects , Lymphocyte Subsets/immunology , Lymphocyte Subsets/pathology , Polymorphism, Genetic , Receptors, KIR/genetics , Receptors, KIR/metabolism
16.
Res Vet Sci ; 89(2): 184-90, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20226487

ABSTRACT

Immunoglobulin (Ig) E is actively transported into ovine colostrum. Here we examine the degree of selectivity and the mechanism by which this transfer occurs in sheep. Results indicate that during colostrogenesis in sheep, transfer of immunoglobulins was most selective for IgG1 and IgA followed by IgE, IgM and IgG2. In milk, selectivity was greatest for IgA, followed by IgM, IgE, IgG1 and IgG2. The neonatal Fc receptor (FcRn) and poly immunoglobulin receptor (pIgR) mediate the transport of IgG1 and IgA across the ovine mammary epithelium respectively. In primates and rodents, the low-affinity IgE receptor, Fc epsilonRII, functions to transport IgE across the intestinal epithelium. We therefore investigated the expression of the low-affinity IgE receptor (CD23), pIgR and FcRn transcripts in the ovine mammary gland. The expression profiles of FcRn, pIgR and CD23 mRNA reflected concentrations of their Ig ligands in mammary secretions. These findings suggest a role for CD23 in transport of IgE across the mammary epithelium of sheep.


Subject(s)
Biological Transport/physiology , Mammary Glands, Animal/metabolism , Sheep/physiology , Animals , Female , Gene Expression Regulation/physiology , Histocompatibility Antigens Class I/genetics , Histocompatibility Antigens Class I/metabolism , Immunoglobulin E , Lactation/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism , Receptors, Fc/genetics , Receptors, Fc/metabolism , Receptors, IgE/genetics , Receptors, IgE/metabolism
17.
Proc Natl Acad Sci U S A ; 98(18): 10119-24, 2001 Aug 28.
Article in English | MEDLINE | ID: mdl-11526234

ABSTRACT

We have identified a nuclear-encoded Hb from plants (GLB3) that has a central domain similar to the "truncated" Hbs of bacteria, protozoa, and algae. The three-dimensional structure of these Hbs is a 2-on-2 arrangement of alpha-helices, distinct from the 3-on-3 arrangement of the standard globin fold [Pesce, A., Couture, M., Dewilde, S., Guertin, M., Yamauchi, K., Ascenzi, P., Moens, L. & Bolognesi, M. (2000) EMBO J. 19, 2424-2434]. GLB3-like genes are not found in animals or yeast, but our analysis reveals that they are present in a wide range of Angiosperms and a Bryophyte. Although cyanobacteria and Chlamydomonas have 2-on-2 Hbs (GLBN), GLB3 is more likely related to GLBO-type 2-on-2 Hbs from bacteria. Consequently, GLB3 is unlikely to have arisen from a horizontal transfer between the chloroplast and nuclear genomes. Arabidopsis thaliana GLB3 protein exhibits unusual concentration-independent binding of O(2) and CO. The absorbance spectrum of deoxy-GLB3 is unique; the protein forms a transient six-coordinate structure after reduction and deoxygenation, which slowly converts to a five-coordinate structure. In A. thaliana, GLB3 is expressed throughout the plant but responds to none of the treatments that induce plant 3-on-3 Hbs. Our analysis of the sequence, ligand interactions, and expression profile of GLB3 indicates that this protein has unique biochemical properties, evolutionary history, and, most likely, a function distinct from those of other plant Hbs.


Subject(s)
Hemoglobins/genetics , Plant Proteins/genetics , Plants/genetics , Amino Acid Sequence , Animals , Arabidopsis/genetics , Arabidopsis/metabolism , Bacterial Proteins/genetics , Eukaryota/genetics , Gene Expression , Genes, Plant , Hemoglobins/metabolism , Kinetics , Molecular Sequence Data , Phylogeny , Plant Proteins/metabolism , Protozoan Proteins/genetics , RNA, Messenger/genetics , RNA, Plant/genetics , Sequence Homology, Amino Acid , Truncated Hemoglobins
18.
Proc Natl Acad Sci U S A ; 99(26): 17197-202, 2002 Dec 24.
Article in English | MEDLINE | ID: mdl-12486248

ABSTRACT

Overexpression of a class 1 Hb (GLB1) protects Arabidopsis thaliana plants from the effects of severe hypoxia. Overexpression of the bifunctional symbiotic Hb (GLB1S) from Parasponia andersonii in A. thaliana also increases survival after hypoxia. Plants overexpressing the Hb 1 protein, mutated to have a low oxygen affinity, are as susceptible to hypoxia as WT plants, suggesting that the protection against hypoxia depends on the ability of the Hb to bind ligands, such as oxygen, with high affinity. A mild hypoxia pretreatment (5%) induces the Hb gene and increases the survival of plants after severe hypoxic treatment (0.1%). These results with Hb 1 show that plant Hbs have a role other than in nitrogen-fixing root nodules. Plants overexpressing the GLB1 protein show early vigorous growth in nonhypoxic conditions and are 50% larger in weight than the controls at 14 days. The constitutive expression of GLB1 also resulted in a reduced number of root hairs and increased number of laterals in the root system.


Subject(s)
Arabidopsis Proteins/biosynthesis , Arabidopsis/metabolism , Hemoglobins , Arabidopsis/growth & development , Arabidopsis Proteins/analysis , Arabidopsis Proteins/genetics , Carrier Proteins/analysis , Carrier Proteins/biosynthesis , Oxidative Stress , Plant Roots/growth & development
19.
Plant Mol Biol ; 47(5): 677-92, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11725952

ABSTRACT

Haemoglobin genes have been found in a number of plant species, but the number of genes known has been too small to allow effective evolutionary inferences. We present nine new non-symbiotic haemoglobin sequences from a range of plants, including class 1 haemoglobins from cotton, Citrus and tomato, class 2 haemoglobins from cotton, tomato, sugar beet and canola and two haemoglobins from the non-vascular plants, Marchantia polymorpha (a liverwort) and Physcomitrella patens (a moss). Our molecular phylogenetic analysis of all currently known non-symbiotic haemoglobin genes and a selection of symbiotic haemoglobins have confirmed the existence of two distinct classes of haemoglobin genes in the dicots. It is likely that all dicots have both class 1 and class 2 non-symbiotic haemoglobin genes whereas in monocots we have detected only class 1 genes. The symbiotic haemoglobins from legumes and Casuarina are related to the class 2 non-symbiotic haemoglobins, whilst the symbiotic haemoglobin from Parasponia groups with the class 1 non-symbiotic genes. Probably, there have been two independent recruitments of symbiotic haemoglobins. Although the functions of the two non-symbiotic haemoglobins remain unknown, their patterns of expression within plants suggest different functions. We examined the expression in transgenic plants of the two non-symbiotic haemoglobins from Arabidopsis using promoter fusions to a GUS reporter gene. The Arabidopsis GLB1 and GLB2 genes are likely to be functionally distinct. The class 2 haemoglobin gene (GLB2) is expressed in the roots, leaves and inflorescence and can be induced in young plants by cytokinin treatment in contrast to the class 1 gene (GLB1) which is active in germinating seedlings and can be induced by hypoxia and increased sucrose supply, but not by cytokinin treatment.


Subject(s)
Hemoglobins/genetics , Plants/genetics , Adenine/analogs & derivatives , Adenine/pharmacology , Arabidopsis/genetics , Arabidopsis/growth & development , Brassica napus/genetics , Cytokinins/pharmacology , DNA, Complementary/chemistry , DNA, Complementary/genetics , DNA, Plant/chemistry , DNA, Plant/genetics , Databases, Nucleic Acid , Evolution, Molecular , Gene Expression Regulation, Plant/drug effects , Genes, Plant/genetics , Glucuronidase/genetics , Glucuronidase/metabolism , Gossypium/genetics , Hemoglobins/physiology , Isopentenyladenosine , Molecular Sequence Data , Phylogeny , Plants, Genetically Modified/genetics , Plants, Genetically Modified/growth & development , Promoter Regions, Genetic/genetics , Protein Isoforms/genetics , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Sequence Analysis, DNA
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