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1.
PLoS Genet ; 17(12): e1009969, 2021 12.
Article in English | MEDLINE | ID: mdl-34962934

ABSTRACT

Teleosts live in aquatic habitats, where they encounter ionic and acid-base fluctuations as well as infectious pathogens. To protect from these external challenges, the teleost epidermis is composed of living cells, including keratinocytes and ionocytes that maintain body fluid ionic homeostasis, and mucous cells that secret mucus. While ionocyte progenitors are known to be specified by Delta-Notch-mediated lateral inhibition during late gastrulation and early segmentation, it remains unclear how epidermal mucous cells (EMCs) are differentiated and maintained. Here, we show that Delta/Jagged-mediated activation of Notch signaling induces the differentiation of agr2-positive (agr2+) EMCs in zebrafish embryos during segmentation. We demonstrated that agr2+ EMCs contain cytoplasmic secretory granules and express muc5.1 and muc5.2. Reductions in agr2+ EMC number were observed in mib mutants and notch3 MOs-injected notch1a mutants, while increases in agr2+ cell number were detected in notch1a- and X-Su(H)/ANK-overexpressing embryos. Treatment with γ-secretase inhibitors further revealed that Notch signaling is required during bud to 15 hpf for the differentiation of agr2+ EMCs. Increased agr2+ EMC numbers were also observed in jag1a-, jag1b-, jag2a- and dlc-overexpressing, but not jag2b-overexpressing embryos. Meanwhile, reductions in agr2+ EMC numbers were detected in jag1a morphants, jag1b mutants, jag2a mutants and dlc morphants, but not jag2b mutants. Reduced numbers of pvalb8-positive epidermal cells were also observed in mib or jag2a mutants and jag1a or jag1b morphants, while increased pvalb8-positive epidermal cell numbers were detected in notch1a-overexpressing, but not dlc-overexpressing embryos. BrdU labeling further revealed that the agr2+ EMC population is maintained by proliferation. Cell lineage experiments showed that agr2+ EMCs are derived from the same ectodermal precursors as keratinocytes or ionocytes. Together, our results indicate that specification of agr2+ EMCs in zebrafish embryos is induced by DeltaC/Jagged-dependent activation of Notch1a/3 signaling, and the cell population is maintained by proliferation.


Subject(s)
Embryonic Development/genetics , Homeodomain Proteins/genetics , Jagged-1 Protein/genetics , Jagged-2 Protein/genetics , Nerve Tissue Proteins/genetics , Receptor, Notch1/genetics , Zebrafish Proteins/genetics , Animals , Calcium-Binding Proteins/genetics , Cell Differentiation/genetics , Ectoderm/growth & development , Epidermis/growth & development , Keratinocytes/cytology , Keratinocytes/metabolism , Mucus/metabolism , Mutant Proteins/genetics , Receptors, Notch/genetics , Signal Transduction/genetics , Zebrafish/genetics , Zebrafish/growth & development
2.
J Anat ; 242(3): 544-551, 2023 03.
Article in English | MEDLINE | ID: mdl-36256534

ABSTRACT

Bone has multiple functions in animals, such as supporting the body for mobility. The zebrafish skeleton is composed of craniofacial and axial skeletons. It shares a physiological curvature and consists of a similar number of vertebrae as humans. Bone degeneration and malformations have been widely studied in zebrafish as human disease models. High-resolution imaging and different bone properties such as density and volume can be obtained using micro-computed tomography (micro-CT). This study aimed to understand the possible changes in the structure and bone mineral density (BMD) of the vertebrae and craniofacial skeleton with age (4, 12 and 24 months post fertilisation [mpf]) in zebrafish. Our data showed that the BMD in the vertebrae and specific craniofacial skeleton (mandibular arch, ceratohyal and ethmoid plate) of 12 and 24 mpf fish were higher than that of the 4 mpf fish. In addition, we found the age-dependent increase in BMD was not ubiquitously observed in facial bones, and such differences were not correlated with bone type. In summary, such additional information on the craniofacial skeleton could help in understanding bone development throughout the lifespan of zebrafish.


Subject(s)
Bone Density , Zebrafish , Animals , Humans , X-Ray Microtomography/methods , Facial Bones/diagnostic imaging , Spine
3.
J Headache Pain ; 23(1): 39, 2022 Mar 29.
Article in English | MEDLINE | ID: mdl-35350973

ABSTRACT

BACKGROUND: Restless legs syndrome is a highly prevalent comorbidity of migraine; however, its genetic contributions remain unclear. OBJECTIVES: To identify the genetic variants of restless legs syndrome in migraineurs and to investigate their potential pathogenic roles. METHODS: We conducted a two-stage genome-wide association study (GWAS) to identify susceptible genes for restless legs syndrome in 1,647 patients with migraine, including 264 with and 1,383 without restless legs syndrome, and also validated the association of lead variants in normal controls unaffected with restless legs syndrome (n = 1,053). We used morpholino translational knockdown (morphants), CRISPR/dCas9 transcriptional knockdown, transient CRISPR/Cas9 knockout (crispants) and gene rescue in one-cell stage embryos of zebrafish to study the function of the identified genes. RESULTS: We identified two novel susceptibility loci rs6021854 (in VSTM2L) and rs79823654 (in CCDC141) to be associated with restless legs syndrome in migraineurs, which remained significant when compared to normal controls. Two different morpholinos targeting vstm2l and ccdc141 in zebrafish demonstrated behavioural and cytochemical phenotypes relevant to restless legs syndrome, including hyperkinetic movements of pectoral fins and decreased number in dopaminergic amacrine cells. These phenotypes could be partially reversed with gene rescue, suggesting the specificity of translational knockdown. Transcriptional CRISPR/dCas9 knockdown and transient CRISPR/Cas9 knockout of vstm2l and ccdc141 replicated the findings observed in translationally knocked-down morphants. CONCLUSIONS: Our GWAS and functional analysis suggest VSTM2L and CCDC141 are highly relevant to the pathogenesis of restless legs syndrome in migraineurs.


Subject(s)
Restless Legs Syndrome , Animals , Genome-Wide Association Study , Humans , Restless Legs Syndrome/complications , Restless Legs Syndrome/genetics , Zebrafish/genetics
4.
Am J Pathol ; 188(2): 336-342, 2018 02.
Article in English | MEDLINE | ID: mdl-29128566

ABSTRACT

Treacher Collins syndrome (TCS) is a rare congenital birth disorder (1 in 50,000 live births) characterized by severe craniofacial defects. Recently, the authors' group unfolded the pathogenesis of polr1c Type 3 TCS by using the zebrafish model. Facial development depends on the neural crest cells, in which polr1c plays a role in regulating their expression. In this study, the authors aimed to identify the functional time window of polr1c in TCS by the use of photo-morpholino to restore the polr1c expression at different time points. Results suggested that the restoration of polr1c at 8 hours after fertilization could rescue the TCS facial malformation phenotype by correcting the neural crest cell expression, reducing the cell death, and normalizing the p53 mRNA expression level in the rescued morphants. However, such recovery could not be reproduced if the polr1c is restored after 30 hours after fertilization.


Subject(s)
DNA-Directed RNA Polymerases/physiology , Fetal Therapies/methods , Genetic Therapy/methods , Mandibulofacial Dysostosis/prevention & control , Animals , Cell Death/genetics , DNA-Directed RNA Polymerases/genetics , Disease Models, Animal , Embryonic Development/physiology , Face/embryology , Gene Expression Regulation, Developmental/physiology , Genes, p53 , Mandibulofacial Dysostosis/embryology , Mandibulofacial Dysostosis/genetics , Mandibulofacial Dysostosis/pathology , Morpholinos , Neural Crest/metabolism , Phenotype , Time Factors , Zebrafish
5.
Hum Mol Genet ; 25(8): 1637-47, 2016 Apr 15.
Article in English | MEDLINE | ID: mdl-26908610

ABSTRACT

Familial exudative vitreoretinopathy (FEVR) belongs to a group of genetically and clinically heterogeneous disorders in retinal vascular development. To date, in approximately 50% of patients with FEVR, pathogenic mutations have been detected in FZD4, LRP5, TSPAN12, NDP and ZNF408. In this study, we identified two heterozygous frameshift mutations in RCBTB1 from three Taiwanese cases through exome sequencing. In patient-derived lymphoblastoid cell lines (LCLs), the protein level of RCBTB1 is approximately half that of unaffected control LCLs, which is indicative of a haploinsufficiency mechanism. By employing transient transfection and reporter assays for the transcriptional activity of ß-catenin, we demonstrated that RCBTB1 participates in the Norrin/FZD4 signaling pathway and that knockdown of RCBTB1 by shRNA significantly reduced nuclear accumulation of ß-catenin under Norrin and Wnt3a treatments. Furthermore, transgenic fli1:EGFP zebrafish with rcbtb1 knockdown exhibited anomalies in intersegmental and intraocular vessels. These results strongly support that reduced RCBTB1 expression may lead to defects in angiogenesis through the Norrin-dependent Wnt pathway, and that RCBTB1 is a putative genetic cause of vitreoretinopathies.


Subject(s)
Guanine Nucleotide Exchange Factors/genetics , Haploinsufficiency , Neovascularization, Physiologic , Retinal Diseases/genetics , Retinal Telangiectasis/genetics , Sequence Analysis, DNA/methods , Cell Line , Exome , Eye Diseases, Hereditary , Eye Proteins/metabolism , Familial Exudative Vitreoretinopathies , Female , Frameshift Mutation , Genetic Predisposition to Disease , Guanine Nucleotide Exchange Factors/metabolism , Humans , Male , Nerve Tissue Proteins/metabolism , Taiwan , Wnt Signaling Pathway
6.
Biochim Biophys Acta ; 1862(6): 1147-58, 2016 06.
Article in English | MEDLINE | ID: mdl-26972049

ABSTRACT

Treacher Collins Syndrome (TCS) is a rare congenital birth disorder (1 in 50,000 live births) characterized by severe craniofacial defects, including the downward slanting palpebral fissures, hypoplasia of the facial bones, and cleft palate (CP). Over 90% of patients with TCS have a mutation in the TCOF1 gene. However, some patients exhibit mutations in two new causative genes, POLR1C and POLR1D, which encode subunits of RNA polymerases I and III, that affect ribosome biogenesis. In this study, we examine the role of POLR1C in TCS using zebrafish as a model system. Our data confirmed that polr1c is highly expressed in the facial region, and dysfunction of this gene by knockdown or knock-out resulted in mis-expression of neural crest cells during early development that leads to TCS phenotype. Next generation sequencing and bioinformatics analysis of the polr1c mutants further demonstrated the up-regulated p53 pathway and predicted skeletal disorders. Lastly, we partially rescued the TCS facial phenotype in the background of p53 mutants, which supported the hypothesis that POLR1C-dependent type 3 TCS is associated with the p53 pathway.


Subject(s)
Mandibulofacial Dysostosis/genetics , Mandibulofacial Dysostosis/pathology , Zebrafish Proteins/genetics , Zebrafish/genetics , Animals , Disease Models, Animal , Gene Expression Regulation, Developmental , Gene Knockdown Techniques , Gene Knockout Techniques , Humans , Mutation , Neural Crest/metabolism , Neural Crest/pathology , Tumor Suppressor Protein p53/genetics , Zebrafish/embryology
7.
Dev Biol ; 391(2): 196-206, 2014 Jul 15.
Article in English | MEDLINE | ID: mdl-24768892

ABSTRACT

The broad diversity of neurons is vital to neuronal functions. During vertebrate development, the spinal cord is a site of sensory and motor tasks coordinated by interneurons and the ongoing neurogenesis. In the spinal cord, V2-interneuron (V2-IN) progenitors (p2) develop into excitatory V2a-INs and inhibitory V2b-INs. The balance of these two types of interneurons requires precise control in the number and timing of their production. Here, using zebrafish embryos with altered Notch signaling, we show that different combinations of Notch ligands and receptors regulate two functions: the maintenance of p2 progenitor cells and the V2a/V2b cell fate decision in V2-IN development. Two ligands, DeltaA and DeltaD, and three receptors, Notch1a, Notch1b, and Notch3 redundantly contribute to p2 progenitor maintenance. On the other hand, DeltaA, DeltaC, and Notch1a mainly contribute to the V2a/V2b cell fate determination. A ubiquitin ligase Mib, which activates Notch ligands, acts in both functions through its activation of DeltaA, DeltaC, and DeltaD. Moreover, p2 progenitor maintenance and V2a/V2b fate determination are not distinct temporal processes, but occur within the same time frame during development. In conclusion, V2-IN cell progenitor proliferation and V2a/V2b cell fate determination involve signaling through different sets of Notch ligand-receptor combinations that occur concurrently during development in zebrafish.


Subject(s)
Interneurons/cytology , Neural Stem Cells/cytology , Neurogenesis/genetics , Receptors, Notch/genetics , Spinal Cord/embryology , Zebrafish/embryology , Animals , Cell Proliferation , Gene Expression Regulation, Developmental , Gene Knockout Techniques/veterinary , Homeodomain Proteins/metabolism , Intracellular Signaling Peptides and Proteins/genetics , Intracellular Signaling Peptides and Proteins/metabolism , Membrane Proteins/genetics , Membrane Proteins/metabolism , Morpholinos/genetics , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Neural Stem Cells/metabolism , Receptor, Notch1/metabolism , Receptor, Notch3 , Receptors, Notch/metabolism , Signal Transduction/genetics , Spinal Cord/cytology , Ubiquitin-Protein Ligases/metabolism , Zebrafish Proteins/genetics , Zebrafish Proteins/metabolism
8.
Biochim Biophys Acta ; 1830(10): 4584-93, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23665588

ABSTRACT

BACKGROUND: Osmotic stress transcription factor 1/transforming growth factor-ß-stimulated clone 22 domain 3 (Ostf1/Tsc22d3) is a transcription factor that plays an osmoregulatory role in euryhaline fishes. Its mRNA and protein levels are up-regulated under hyperosmotic stress. However, its osmoregulatory and developmental functions have not been studied in any stenohaline freshwater fishes. Zebrafish is an excellent model to perform such study to unfold the functional role of Tsc22d3. METHODS: We identified the zebrafish Tsc22d3 and performed knockdown studies using morpholino antisense oligonucleotide (MO). RESULTS: Zebrafish Tsc22d3 did not response to hypertonic stress and ts22d3 knockdown or overexpression by injecting MO or capped RNA did not change the transcriptional levels of any of the known ionocyte markers. To reveal the unknown function of zebrafish Tsc22d3, we performed several in situ molecular marker studies on tsc22d3 morphants and found that Tsc22d3 plays multi-functional roles in dorsoventral (DV) patterning, segmentation, and brain development. We then aimed to identify the mechanism of Tsc22d3 in the earliest stages of DV patterning. Our results demonstrated that tsc22d3 is a ventralizing gene that can stimulate the transcription of bone morphogenetic protein 4 (bmp4) and, thus, has a positive effect on the Bmp signaling pathway. Furthermore, we showed that Tsc22d3 interacts with deubiquitylating enzymes, ubiquitin-specific protease 15 (Usp15) and ovarian tumor domain containing protein 4 (Otud4). In addition, the interruption of Bmp4 signaling by double knockdown of usp15 and otud4 reduced the ventralized effects in tsc22d3-overexpressing embryos. CONCLUSIONS: This is the first study to identify new developmental functions of Tsc22d3 in zebrafish. GENERAL SIGNIFICANCE: Zebrafish tsc22d3 is a ventralizing gene and plays a role in early embryogenesis.


Subject(s)
Body Patterning , Bone Morphogenetic Proteins/metabolism , Transcription Factors/physiology , Transforming Growth Factor beta/metabolism , Zebrafish Proteins/physiology , Amino Acid Sequence , Animals , Base Sequence , DNA Primers , Gene Knockdown Techniques , Molecular Sequence Data , Sequence Homology, Amino Acid , Transcription Factors/chemistry , Transforming Growth Factor beta/chemistry , Zebrafish/embryology , Zebrafish Proteins/genetics
9.
Int J Biol Macromol ; 266(Pt 2): 131216, 2024 May.
Article in English | MEDLINE | ID: mdl-38556235

ABSTRACT

Treacher Collins syndrome-3 (TCS-3) is a rare congenital craniofacial disorder attributed to variants in the RNA pol I subunit C (POLR1C). The pathogenesis of TCS-3 linked to polr1c involves the activation of apoptosis-dependent p53 pathways within neural crest cells (NCCs). This occurs due to disruptions in ribosome biogenesis, and the restoration of polr1c expression in early embryogenesis effectively rescues the observed craniofacial phenotype in polr1c-deficient zebrafish. Clinical variability in TCS patients suggests interactions between genes and factors like oxidative stress. Elevated production of reactive oxygen species (ROS) in epithelial cells may worsen phenotypic outcomes in TCS individuals. Our study confirmed excessive ROS production in facial regions, inducing apoptosis and altering p53 pathways. Deregulated cell-cycle and epithelial-to-mesenchymal transition (EMT) genes were also detected in the TCS-3 model. Utilizing p53 inhibitor (Pifithrin-α; PFT-α) or antioxidants (Glutathione; GSH and N-Acetyl-L-cysteine; NAC) effectively corrected migrated NCC distribution in the pharyngeal arch (PA), suppressed oxidative stress, prevented cell death, and modulated EMT inducers. Crucially, inhibiting p53 activation or applying antioxidants within a specific time window, notably within 30 h post-fertilization (hpf), successfully reversed phenotypic effects induced by polr1c MO.


Subject(s)
Antioxidants , Benzothiazoles , Disease Models, Animal , Mandibulofacial Dysostosis , Oxidative Stress , Reactive Oxygen Species , Toluene/analogs & derivatives , Tumor Suppressor Protein p53 , Zebrafish Proteins , Zebrafish , Animals , Tumor Suppressor Protein p53/metabolism , Tumor Suppressor Protein p53/genetics , Mandibulofacial Dysostosis/genetics , Mandibulofacial Dysostosis/drug therapy , Antioxidants/pharmacology , Benzothiazoles/pharmacology , Zebrafish Proteins/genetics , Zebrafish Proteins/metabolism , Oxidative Stress/drug effects , Reactive Oxygen Species/metabolism , Epithelial-Mesenchymal Transition/drug effects , Toluene/pharmacology , Neural Crest/drug effects , Neural Crest/metabolism , Apoptosis/drug effects , RNA Polymerase I/antagonists & inhibitors , RNA Polymerase I/metabolism , RNA Polymerase I/genetics
10.
Circ Res ; 109(12): 1375-86, 2011 Dec 09.
Article in English | MEDLINE | ID: mdl-22021929

ABSTRACT

RATIONALE: Hypoxia is a significant perturbation that exacerbates endothelial barrier dysfunction, contributing to the disruption of vascular homeostasis and the development of various diseases such as atherosclerosis and metastasis of tumors. To date, it is not known what strategy might be used to counter the effect of hypoxia on endothelial permeability. OBJECTIVE: This study investigated the role of nitrite in regulating vascular integrity under hypoxic conditions. METHODS AND RESULTS: We found denitrosylation and the resulting activation of caspase-3 to be critical for hypoxia-induced endothelial permeability. Nitrite treatment led to S-nitrosylation and the inactivation of caspase-3, suppressing the barrier dysfunction of endothelia caused by hypoxia. This process required the conversion of nitrite to bioactive nitric oxide in a nitrite reductase-dependent manner. Using primary human umbilical vein endothelial cells as a model, we showed that in the presence of nitrite, the S-nitrosylated and inactivated form of caspase-3 was unable to cleave ß-catenin, a key component in the VE-cadherin complex. Therefore, nitrite treatment led to the maintenance of VE-cadherin-mediated adherens junctions under hypoxic conditions. In in vivo experiments using a zebrafish model, nitrite was found to protect blood vessels from hypoxia-induced vascular leakage. CONCLUSIONS: These results are the first to demonstrate that nitrite plays a critical role in the protection of endothelial barrier function against hypoxic insult. Our findings show that nitrite holds great potential for the treatment of diseases associated with hypoxia-induced disorder of vascular homeostasis.


Subject(s)
Caspase 3/metabolism , Cell Membrane Permeability/drug effects , Cell Membrane Permeability/physiology , Endothelium, Vascular/physiopathology , Hypoxia/physiopathology , Nitrites/pharmacology , Adherens Junctions/drug effects , Adherens Junctions/physiology , Animals , Antigens, CD/metabolism , Cadherins/metabolism , Cattle , Cells, Cultured , Endothelium, Vascular/cytology , Endothelium, Vascular/drug effects , Homeostasis/physiology , Humans , Hypoxia/complications , Mice , Models, Animal , Nitric Oxide/metabolism , Zebrafish , beta Catenin/metabolism
11.
Front Cell Dev Biol ; 11: 1225128, 2023.
Article in English | MEDLINE | ID: mdl-37791075

ABSTRACT

The peptidyl prolyl cis-trans isomerase Pin1 plays vital roles in diverse cellular processes and pathological conditions. NeuroD is a differentiation and survival factor for a subset of neurons and pancreatic endocrine cells. Although multiple phosphorylation events are known to be crucial for NeuroD function, their mechanisms remain elusive. In this study, we demonstrate that zebrafish embryos deficient in Pin1 displayed phenotypes resembling those associated with NeuroD depletion, characterized by defects in formation of mechanosensory hair cells. Furthermore, zebrafish Pin1 interacts with NeuroD in a phosphorylation-dependent manner. In Pin1-deficient cell lines, NeuroD is rapidly degraded. However, the protein stability of NeuroD is restored upon overexpression of Pin1. These findings suggest that Pin1 functionally regulates NeuroD protein levels by post-phosphorylation cis-trans isomerization during neuronal specification.

12.
Trends Cell Biol ; 15(9): 453-7, 2005 Sep.
Article in English | MEDLINE | ID: mdl-16087338

ABSTRACT

Borders are essential for demarcating repeated structures such as somites during vertebrate development. Two recent articles describe roles for Integrinalpha5 and its ligand Fibronectin1 in zebrafish anterior intersomitic boundary formation and link them to Notch and Eph-Ephrin pathways in epithelialization of somite boundary cells. Together with these pathways, Integrinalpha5 and Fibronectin1 orchestrate the orderly formation of somite and later myotome borders. These studies shed light on components downstream of the periodic segmentation mechanism - the 'segmentation clock' - in somitogenesis.


Subject(s)
Integrins/physiology , Somites/physiology , Zebrafish/embryology , Animals , Ephrins/physiology , Epithelium/embryology , Fibronectins/physiology , Homeodomain Proteins/physiology , Integrin alpha5/physiology , Nerve Tissue Proteins/physiology , Receptor, Notch1/physiology , Receptors, Eph Family/physiology , Zebrafish Proteins/physiology
13.
PLoS Genet ; 3(1): e18, 2007 Jan 26.
Article in English | MEDLINE | ID: mdl-17257056

ABSTRACT

Pronephros, a developmental model for adult mammalian kidneys (metanephros) and a functional kidney in early teleosts, consists of glomerulus, tubule, and duct. These structural and functional elements are responsible for different kidney functions, e.g., blood filtration, waste extraction, salt recovery, and water balance. During pronephros organogenesis, cell differentiation is a key step in generating different cell types in specific locations to accomplish designated functions. However, it is poorly understood what molecules regulate the differentiation of different cell types in different parts of the kidney. Two types of epithelial cells, multi-cilia cells and principal cells, are found in the epithelia of the zebrafish distal pronephric duct. While the former is characterized by at least 15 apically localized cilia and expresses centrin2 and rfx2, the latter is characterized by a single primary cilium and sodium pumps. Multi-cilia cells and principal cells differentiate from 17.5 hours post-fertilization onwards in a mosaic pattern. Jagged2a-Notch1a/Notch3-Her9 is responsible for specification and patterning of these two cell types through a lateral inhibition mechanism. Furthermore, multi-cilia cell hyperplasia was observed in mind bomb mutants and Mind bomb was shown to interact with Jagged2a and facilitate its internalization. Taken together, our findings add a new paradigm of Notch signaling in kidney development, namely, that Jagged2a-Notch signaling modulates cell fate choice in a nephric segment, the distal pronephric duct.


Subject(s)
Calcium-Binding Proteins/metabolism , Cell Lineage , Kidney/embryology , Receptors, Notch/metabolism , Signal Transduction , Zebrafish Proteins/metabolism , Zebrafish/genetics , Animals , Calcium-Binding Proteins/genetics , Cell Differentiation , Gene Expression Regulation, Developmental , Jagged-2 Protein , Kidney/ultrastructure , Microscopy, Electron, Transmission , Molecular Sequence Data , Receptors, Notch/genetics , Zebrafish Proteins/genetics
14.
Sci Rep ; 10(1): 14213, 2020 08 26.
Article in English | MEDLINE | ID: mdl-32848183

ABSTRACT

Mutations of the Gon4l/udu gene in different organisms give rise to diverse phenotypes. Although the effects of Gon4l/Udu in transcriptional regulation have been demonstrated, they cannot solely explain the observed characteristics among species. To further understand the function of Gon4l/Udu, we used yeast two-hybrid (Y2H) screening to identify interacting proteins in zebrafish and mouse systems, confirmed the interactions by co-immunoprecipitation assay, and found four novel Gon4l-interacting proteins: BRCA1 associated protein-1 (Bap1), DNA methyltransferase 1 (Dnmt1), Tho complex 1 (Thoc1, also known as Tho1 or HPR1), and Cryptochrome circadian regulator 3a (Cry3a). Furthermore, all known Gon4l/Udu-interacting proteins-as found in this study, in previous reports, and in online resources-were investigated by Phenotype Enrichment Analysis. The most enriched phenotypes identified include increased embryonic tissue cell apoptosis, embryonic lethality, increased T cell derived lymphoma incidence, decreased cell proliferation, chromosome instability, and abnormal dopamine level, characteristics that largely resemble those observed in reported Gon4l/udu mutant animals. Similar to the expression pattern of udu, those of bap1, dnmt1, thoc1, and cry3a are also found in the brain region and other tissues. Thus, these findings indicate novel mechanisms of Gon4l/Udu in regulating CpG methylation, histone expression/modification, DNA repair/genomic stability, and RNA binding/processing/export.


Subject(s)
Co-Repressor Proteins/metabolism , DNA-Binding Proteins/metabolism , Erythroid-Specific DNA-Binding Factors/metabolism , Zebrafish Proteins/metabolism , Animals , Cell Line , DNA (Cytosine-5-)-Methyltransferase 1/metabolism , Mice , RNA-Binding Proteins/metabolism , Tumor Suppressor Proteins/metabolism , Two-Hybrid System Techniques , Ubiquitin Thiolesterase/metabolism , Zebrafish
15.
J Invest Dermatol ; 140(2): 404-414.e13, 2020 02.
Article in English | MEDLINE | ID: mdl-31437444

ABSTRACT

Skin depigmentation diseases, such as vitiligo, are pigmentation disorders that often destroy melanocytes. However, their pathological mechanisms remain unclear, and therefore, promising treatments or prevention has been lacking. Here, we demonstrate that a zebrafish insertional mutant showing a significant reduction of nicastrin transcript possesses melanosome maturation defect, Tyrosinase-dependent mitochondrial swelling, and melanophore cell death. The depigmentation phenotypes are proven to be a result of γ-secretase inactivation. Furthermore, live imaging demonstrates that macrophages are recruited to and can phagocytose melanophore debris. Thus, we characterize a potential zebrafish depigmentation disease model, a nicastrinhi1384 mutant, which can be used for further treatment or drug development of diseases related to skin depigmentation and/or inflammation.


Subject(s)
Amyloid Precursor Protein Secretases/genetics , Hypopigmentation/genetics , Membrane Glycoproteins/genetics , Monophenol Monooxygenase/metabolism , Skin/immunology , Zebrafish Proteins/genetics , Amyloid Precursor Protein Secretases/metabolism , Animals , Animals, Genetically Modified , Disease Models, Animal , Embryo, Nonmammalian , Humans , Hypopigmentation/immunology , Hypopigmentation/pathology , Melanosomes/immunology , Melanosomes/metabolism , Melanosomes/ultrastructure , Membrane Glycoproteins/metabolism , Microscopy, Electron, Transmission , Monophenol Monooxygenase/antagonists & inhibitors , Monophenol Monooxygenase/genetics , Mutation , Skin/pathology , Skin Pigmentation/drug effects , Skin Pigmentation/genetics , Zebrafish , Zebrafish Proteins/metabolism
16.
BMC Genomics ; 10: 637, 2009 Dec 30.
Article in English | MEDLINE | ID: mdl-20040115

ABSTRACT

BACKGROUND: Deconjugation of ubiquitin and/or ubiquitin-like modified protein substrates is essential to modulate protein-protein interactions and, thus, signaling processes in cells. Although deubiquitylating (deubiquitinating) enzymes (DUBs) play a key role in this process, however, their function and regulation remain insufficiently understood. The "loss-of-function" phenotype studies can provide important information to elucidate the gene function, and zebrafish is an excellent model for this goal. RESULTS: From an in silico genome-wide search, we found more than 90 putative DUBs encoded in the zebrafish genome belonging to six different subclasses. Out of them, 85 from five classical subclasses have been tested with morpholino (MO) knockdown experiments and 57 of them were found to be important in early development of zebrafish. These DUB morphants resulted in a complex and pleiotropic phenotype that, regardless of gene target, always affected the notochord. Based on the huC neuronal marker expression, we grouped them into five sets (groups I to V). Group I DUBs (otud7b, uchl3 and bap1) appear to be involved in the Notch signaling pathway based on the neuronal hyperplasia, while group IV DUBs (otud4, usp5, usp15 and usp25) play a critical role in dorsoventral patterning through the BMP pathway. CONCLUSION: We have identified an exhaustive list of genes in the zebrafish genome belonging to the five established classes of DUBs. Additionally, we performed the corresponding MO knockdown experiments in zebrafish as well as functional studies for a subset of the predicted DUB genes. The screen results in this work will stimulate functional follow-up studies of potential DUB genes using the zebrafish model system.


Subject(s)
Endopeptidases/genetics , Zebrafish Proteins/genetics , Zebrafish/genetics , Animals , Body Patterning , Bone Morphogenetic Proteins/genetics , Embryo, Nonmammalian , Embryonic Development , Gene Expression Regulation, Developmental , Gene Knockdown Techniques , Receptors, Notch/genetics , Sequence Analysis, DNA , Zebrafish/embryology
17.
Dev Cell ; 6(4): 539-50, 2004 Apr.
Article in English | MEDLINE | ID: mdl-15068793

ABSTRACT

During segmentation of the vertebrate hindbrain, a distinct population of boundary cells forms at the interface between each segment. Little is known regarding mechanisms that regulate the formation or functions of these cells. We have investigated a potential role of Notch signaling and find that in the zebrafish hindbrain, radical fringe is expressed in boundary cells and delta genes are expressed adjacent to boundaries, consistent with a sustained activation of Notch in boundary cells. Mosaic expression experiments reveal that activation of the Notch/Su(H) pathway regulates cell affinity properties that segregate cells to boundaries. In addition, Notch signaling correlates with a delayed neurogenesis at hindbrain boundaries and is required to inhibit premature neuronal differentiation of boundary cells. These findings reveal that Notch activation couples the regulation of location and differentiation in hindbrain boundary cells. Such coupling may be important for these cells to act as a stable signaling center.


Subject(s)
Embryo, Nonmammalian/embryology , Receptors, Cell Surface/metabolism , Rhombencephalon/embryology , Stem Cells/metabolism , Transcription Factors , Zebrafish Proteins , Zebrafish/embryology , Animals , Body Patterning/genetics , Cell Differentiation/genetics , Cell Movement/genetics , Embryo, Nonmammalian/cytology , Embryo, Nonmammalian/metabolism , Intracellular Signaling Peptides and Proteins , Membrane Proteins/genetics , Membrane Proteins/metabolism , Molecular Sequence Data , Neurons/cytology , Neurons/metabolism , Proteins/genetics , Proteins/metabolism , Receptor, Notch1 , Receptors, Cell Surface/genetics , Rhombencephalon/cytology , Rhombencephalon/metabolism , Signal Transduction/genetics , Stem Cells/cytology , Zebrafish/genetics , Zebrafish/metabolism
18.
Dev Cell ; 4(1): 67-82, 2003 Jan.
Article in English | MEDLINE | ID: mdl-12530964

ABSTRACT

Lateral inhibition, mediated by Notch signaling, leads to the selection of cells that are permitted to become neurons within domains defined by proneural gene expression. Reduced lateral inhibition in zebrafish mib mutant embryos permits too many neural progenitors to differentiate as neurons. Positional cloning of mib revealed that it is a gene in the Notch pathway that encodes a RING ubiquitin ligase. Mib interacts with the intracellular domain of Delta to promote its ubiquitylation and internalization. Cell transplantation studies suggest that mib function is essential in the signaling cell for efficient activation of Notch in neighboring cells. These observations support a model for Notch activation where the Delta-Notch interaction is followed by endocytosis of Delta and transendocytosis of the Notch extracellular domain by the signaling cell. This facilitates intramembranous cleavage of the remaining Notch receptor, release of the Notch intracellular fragment, and activation of target genes in neighboring cells.


Subject(s)
Ligases/metabolism , Membrane Proteins/metabolism , Neurons/metabolism , Signal Transduction , Ubiquitin-Protein Ligases , Ubiquitin/metabolism , Zebrafish Proteins/metabolism , Zebrafish/metabolism , Animals , Blotting, Western , Cell Differentiation , Endocytosis , Gene Expression Regulation , In Situ Hybridization , Intracellular Signaling Peptides and Proteins , Ligases/chemistry , Ligases/genetics , Membrane Proteins/genetics , Molecular Sequence Data , Neurons/cytology , Phenotype , Protein Structure, Tertiary , RNA, Messenger/genetics , RNA, Messenger/metabolism , Receptors, Notch , Spinal Cord/embryology , Spinal Cord/metabolism , Zebrafish/embryology , Zebrafish/genetics , Zebrafish Proteins/chemistry , Zebrafish Proteins/genetics
19.
Dev Genes Evol ; 219(7): 339-51, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19705151

ABSTRACT

In vertebrates, hindbrain is subdivided into seven segments termed rhombomeres and the interface between each rhombomere forms the boundary. Similar to the D/V boundary formation in Drosophila, Notch activation has been shown to regulate the segregation of rhombomere boundary cells. Here we further explored the function of Notch signaling in the formation of rhombomere boundaries. By using bodipy ceramide cell-labeling technique, we found that the hindbrain boundary is formed initially in mib mutants but lost after 24 hours post-fertilization (hpf). This phenotype was more severe in mib(ta52b) allele than in mib(tfi91) allele. Similarly, injection of su(h)-MO led to boundary defects in a dosage-dependent manner. Boundary cells were recovered in mib(ta52b) mutants in the hdac1-deficient background, where neurogenesis is inhibited. Furthermore, boundary cells lost sensitivity to reduced Notch activation from 15 somite stage onwards. We also showed that knockdown of notch3 function in notch1a mutants leads to the loss of rhombomere boundary cells and causes neuronal hyperplasia, indicating that Notch1a and Notch3 play a redundant role in the maintenance of rhombomere boundary.


Subject(s)
Homeodomain Proteins/metabolism , Nerve Tissue Proteins/metabolism , Receptor, Notch1/metabolism , Receptors, Notch/metabolism , Rhombencephalon/embryology , Zebrafish Proteins/metabolism , Zebrafish/embryology , Zebrafish/metabolism , Animals , Base Sequence , Cell Differentiation , Gene Knockdown Techniques , Histone Deacetylase 1 , Histone Deacetylases/genetics , Homeodomain Proteins/genetics , Mutation , Nerve Tissue Proteins/genetics , Neural Tube/cytology , Neural Tube/embryology , Neural Tube/metabolism , Receptor, Notch1/genetics , Receptor, Notch3 , Receptors, Notch/genetics , Rhombencephalon/cytology , Rhombencephalon/metabolism , Signal Transduction , Ubiquitin-Protein Ligases/genetics , Zebrafish/genetics , Zebrafish Proteins/genetics
20.
Stem Cells Dev ; 28(16): 1116-1127, 2019 08 15.
Article in English | MEDLINE | ID: mdl-31140357

ABSTRACT

Interkinetic nuclear migration (INM) is a process by which nuclei oscillate between the basal and apical surfaces of epithelial cells in coordination with the cell cycle. The cytoskeletal machinery including microtubules and actin has been reported to drive apical INM; however, the role of nuclear proteins in this process has yet to be fully elucidated. Here, we investigated the function of a SUN-domain protein, Sun1, in zebrafish. We found that zebrafish sun1 is highly expressed in the ventricular zone of the brain. Knocking down sun1 with antisense morpholino oligonucleotides reduced the abundance of nestin- and gfap-expressing neural stem cells and progenitor cells. The live-cell imaging results showed that sun1 morphant cells migrated toward the basal side during the S phase but failed to migrate apically during the G2 phase. On the contrary, the passive stochastic movement during the G2 phase was unaffected. Furthermore, down regulation of sun1 was shown to reduce the expression of genes associated with the Notch pathway, whereas the expression of genes in the Wnt pathway was less perturbed. Findings from this research suggest that the Sun1-mediated nucleo-cytoskeletal interaction contributes to apical nuclear migration, and may thus affect exposure to Notch signal, thereby altering the composition of the progenitor pool in the embryonic neurogenesis of zebrafish.


Subject(s)
Cell Nucleus/metabolism , Microtubule-Associated Proteins/metabolism , Neurogenesis/physiology , Nuclear Proteins/metabolism , Receptors, Notch/metabolism , Signal Transduction/physiology , Zebrafish/metabolism , Actins/metabolism , Animals , Cell Cycle/physiology , Cell Division/physiology , Cell Proliferation/physiology , Centrosome/metabolism , Cytoskeleton/metabolism , Neural Stem Cells , Neurons/metabolism
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